TCONS_00036089 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036089
Unique NameTCONS_00036089
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length619

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036089 ID=TCONS_00036089|Name=TCONS_00036089|organism=Clytia hemisphaerica|type=transcript|length=619bp
ACTTAGCggtttttgagatatttggacATTTGTGGTTACCTTAAGCATTT
TCGTGATGAGaattttgactgaaaatttgaattttttctcatTCTTGGAT
ATTTATACTTACTTTTAAGCAATTTCCCTTTAGAATATAATGTCTCTAAA
GGTTATCACACAAAAGAACTGATTTACAAACTGAATTTAGAtcagaatct
tcaaaaatatgcatttttcactttttttgatttttcatcaaaatgtggTT
TTCAGTCAACTTTGGAGCCACANCCTTGGAAGTATTTGTTCCCAATTCTA
GCTCTGTaggttaattttcaaattttcaaattttgcagatacACATACAT
TCTCAGATTCTTGCTCAACTACAGCTTTAGAGGGTAATACAAAAGACGGA
GGTCAAGAACAAGCAGAGTTAGGGGTTAGTTAGTTAATTAAGTTTTTCTT
GACGAAAACTAAACGAATCCTAGCTAAACTCCACTCCAAATacagaattt
attttgatattttacgctaagaaatgacaaaaatttaattcctagctgtt
ttatatttttttatattatattagaTCTAAGTAGCTAAGTAGCTACTTTT
GTTATTCGAAAGATGGGTA
Run BLAST on NCBI

transcript from alignment at sc0001411:58461..59079

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036089 ID=TCONS_00036089|Name=TCONS_00036089|organism=Clytia hemisphaerica|type=transcript|length=619bp|location=Sequence derived from alignment at sc0001411:58461..59079 (Clytia hemisphaerica)
TACCCATCTTTCGAATAACAAAAGTAGCTACTTAGCTACTTAGAtctaat
ataatataaaaaaatataaaacagctaggaattaaatttttgtcatttct
tagcgtaaaatatcaaaataaattctgtATTTGGAGTGGAGTTTAGCTAG
GATTCGTTTAGTTTTCGTCAAGAAAAACTTAATTAACTAACTAACCCCTA
ACTCTGCTTGTTCTTGACCTCCGTCTTTTGTATTACCCTCTAAAGCTGTA
GTTGAGCAAGAATCTGAGAATGTATGTgtatctgcaaaatttgaaaattt
gaaaattaacctACAGAGCTAGAATTGGGAACAAATACTTCCAAGGNTGT
GGCTCCAAAGTTGACTGAAAAccacattttgatgaaaaatcaaaaaaagt
gaaaaatgcatatttttgaagattctgaTCTAAATTCAGTTTGTAAATCA
GTTCTTTTGTGTGATAACCTTTAGAGACATTATATTCTAAAGGGAAATTG
CTTAAAAGTAAGTATAAATATCCAAGAatgagaaaaaattcaaattttca
gtcaaaattCTCATCACGAAAATGCTTAAGGTAACCACAAATgtccaaat
atctcaaaaaccGCTAAGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021219XLOC_021219Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036089-exon-sc0001411-1491911889:58461..59079TCONS_00036089-exon-sc0001411-1491911889:58461..59079Clytia hemisphaericaexon
TCONS_00036089-exon-sc0001411-1510915933:58461..59079TCONS_00036089-exon-sc0001411-1510915933:58461..59079Clytia hemisphaericaexon
TCONS_00036089-exon-sc0001411-1575043694:58461..59079TCONS_00036089-exon-sc0001411-1575043694:58461..59079Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001411supercontigsc0001411:58461..59079 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.692249	0.843814	2.05747	1.82121	2.23302	1.45154	1.33144	2.65969	0.947935	1.65114	0.263003	0.780484	1.0016	0.836714	1.62146	0.685485	0	0.199741	1.7477	2.31012	1.17128	1.10181	0.19843	0.360803	0.278714	1.45634	0.94921	0.759767	0.480214	0.293557
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00036089 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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