TCONS_00036086 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036086
Unique NameTCONS_00036086
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1077

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036086 ID=TCONS_00036086|Name=TCONS_00036086|organism=Clytia hemisphaerica|type=transcript|length=1077bp
CATCATTGGTATAAAGAATTGAagtaatttaaaaaacaaaaaaacataaa
aaagaacATTGAAAAAAGTTATGCAAAGATGACACGAAATTCAGTTCAAC
CGTTTTTGATTGGAATCGCTGGTGGTAGTTGTTGTGGAAAGACTGAAGTT
TGTTCCACCATTTGTAAAGAATTGGGCCAAAACTCAGAAATTGTGACAAA
TCGTGTCACTGTTCTAGCACACAAGAGTTTTTACCGTGAGCTGACTGGTG
AAGAACGTGAGTTAGCTCAGAATGGGAAATTCAATTTTGATCATCCGACA
GCTTTCGACGATGAGCTCGCTATTCAATCTTTGAAACAACTCAAAGCAGG
AAACGTTGTCAAGATTCCCACGTATAACGTATCCACGCATTCACGTGAAG
AAGAGTATCAGACGATTTATCCGTCAGACGTGATactttttgaaggaatt
cttacGCTGTATAACAAGGAGGTGCGTGATATGTTGGATATGAAAATTTT
CGTAGATACGGACTCTGATACGCGGCTAGCGCGCCGTGTGTTACGGGACA
CCGTAGAACATAAACGGAATATTGACGCCGTCTTAGATCAATATACGAAA
TTCGTGAAAAGATCTTTCGAAGATTTTGCATTGCCGACTAaaaaatatgc
tgacgtcatcataccACGTGGTGCAGATAATTCGGTTGCTGTTGGTTTGA
TCGTTGAGCATATTAAAGATTTGTTAGGCGAACGGCCCACACGTAAAAAG
AGAACAGTATCTGAAAGCTCTGCTGGTAGACCACATTAGTTATAGTCTAT
CTGCAAGACAATGGTGTTTGTAGTTACTACGTCAAATTTACGAAACCAGG
TTATTCGCACTCAAACTAGGCACTAGTAAATTCTGTACTGGGAGTgtgaa
atgataatttttgcTGGCAGAGATTTATATGATACATATCTTTTAATTAT
ATACTGCAGATCACGATATATTTAAagataaataaaccagctgcgctgga
agctccggcttaagagattaaaagatgtgaagaatgagtttgttgagttg
tgttagaacgttgcccacaaactaatA
Run BLAST on NCBI

protein sequence of TCONS_00036086-protein

>TCONS_00036086-protein ID=TCONS_00036086-protein|Name=TCONS_00036086-protein|organism=Clytia hemisphaerica|type=polypeptide|length=236bp
MTRNSVQPFLIGIAGGSCCGKTEVCSTICKELGQNSEIVTNRVTVLAHKS
FYRELTGEERELAQNGKFNFDHPTAFDDELAIQSLKQLKAGNVVKIPTYN
VSTHSREEEYQTIYPSDVILFEGILTLYNKEVRDMLDMKIFVDTDSDTRL
ARRVLRDTVEHKRNIDAVLDQYTKFVKRSFEDFALPTKKYADVIIPRGAD
NSVAVGLIVEHIKDLLGERPTRKKRTVSESSAGRPH
Run BLAST on NCBI

transcript from alignment at sc0001411:37113..51158-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036086 ID=TCONS_00036086|Name=TCONS_00036086|organism=Clytia hemisphaerica|type=transcript|length=14046bp|location=Sequence derived from alignment at sc0001411:37113..51158- (Clytia hemisphaerica)
CATCATTGGTATAAAGAATGTAGGTATCAGTCATTTAAGTTAAAGTTTTT
ATAGCTAGGTAAATGCTGGCGAAATTTAATAAAAATTTTTATTGCGTAAT
TTTCTGAGGAGAGGATGGGGATAATCGATAATGCATGGATGATGGAAGCC
CAACTTTACTACATTTTCCACTTTGCAGCTGCTGGGGAGGATGGGTTTAC
ATAATGACTCTCCAAAAATGAACATAGTGATCTACTTTGCAGATCAAATT
GTCTTAAAAACAACTCACAAAGAAGACTGGGTTCAGTGTTCAGAAAATGA
ACGGGGTATTTTTCAGTTGCGTAGAACATATAGAAGAAGCATCATGATTG
GCCAAACACGGCTTATTTTGCCTAACTTTCACTTCTGCCTCTAACTATCG
GTAGATTTTTGTTCTGTAAAATAACTTGTTTGTTTTTAAAACTGTTACTT
GACTATATTTTGCCGAACGCTTCTTTGCTCTCTATGACATCAGTATTTCT
TTGTTCGGCAAATTAACTTTTTTCCCGCGCTTTCATCTTGTTGGAGAATG
TAAAATCGCACATGTGGAATATGTCTTGTAACTATGCTTCTTTTTTATTC
TAGTTATATCTATGACCTATCTATTCTCCTTGCTTTTAAAGCTTGCTAGA
GAAGATCTTGTAAATGTTCAACTTGACCCGTATTTTTCACTTGCAACCAT
TGGCAAATGAACGGGGTCGAAAACGAAAGTGACGTAATAGCGCCGAATAC
CCAGTTTAATTGAACCGGGTTGGAAATATTTTGCTTCATTTCAAAGAACT
GCATAGATGAAATTTTTTTCTCCATGGGTCAATTTTGTCTTCGAAGATTG
AAGAAACTTTTAATGAAAAAATAAAGTTCCCAGTTTTCTTCTTTTTTTCC
CTTTTTCAGTTTGAAGTTCATTTTTATTCATTTTCACGCTTTTAGCCTGA
GACGTCCTATCTCATTTACACTGGGTGACGAATACCCCATGCAAATGCAC
ACCCGATAATTTGCCAGGATGTGCCTGACTGAACTTACACCAGTGTTTTC
TAGTAGGATTACATACAGAAGTTACATACTTTAGCACTTTAGCAAATCCT
AACTTAGCAGCTAAGTAAATAATGAACTCAATAAAGAACTTTGAGGCTGT
AACTCTTTCTGGAAAAATAGGCTCCAGGTTCGGAGCTATTAAGTTAAGGC
GTAAGGTTCCTTATGATGGCATTCAAAAATTGTGTGAGGTTTTCAAAAAC
AGCAAAAAAAAAAAGAAATTTGAATATCCTTTTTAAAAATAACTCTTTTA
AAACGAAACTTCACAATATTGGCTCTAAAGTAGGTTGAAGTAGGTTGAAA
AAAAAGATTTTGTAAAATGGGCCAAAATTGCGGCACAAATCAAGAAAAAC
ACTATGTTGATAAAACAGCAGCCACAAATTTGATCAATGAGTAAGAATCA
TTTTTTTCAGATGAAACTCGTAGCAAAAGGGTTTATCCACAAAATATCAA
AAATGGAACCAAAATTATTGGGTCATTGGGCTAAAATTGCGGCTCAAAGT
TGACAATTTTTTTCATATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCAG
CCACAAAATGTACACTCTTTCTTAAAATAACACTGTATTGTGTCAGATTG
TGTTTGTTTTGCTTTAGGCTTTGCAAATATTCATGTTTCGAAAACAAAAC
CCAGCCTTGAATGTGTAAATTGATAAATTAGTGATTGAAGTATGATTGAA
GCCACATTTTAAGCCTATTGAAAACCCTGCAGCCACAAATTAAACCCATA
AATATCTTTATCAGACCTTAAACTACTAATTTCAAGAACAACGGTTAAAA
AATATTGAAGTTTTAAAGCAGGACAGCACATATAAGCCAACCTGTTGAGT
GAGCCACATGACATACAGCCACAAAACCTGCCCTCACTTTGCCATCTTAT
ATTTCAAGACTGAATCACTCAACTTCAAAGAGGGCCACATTTTTGGAAAG
CTCATCAATTTGCTTATTTTATGGAATTTTGTACTACGNAGGGCCACATT
TTTGGAAAGCTCGTCAATTTCCTTATTTTATGGAATTTTGTACTACGCAG
CAGCCACAAGAATGTCAACGCTGTGGGCTAAAAAGTGGTTGTGATTGAAA
ACCTCACTTTTTGGGGTTCTATTTTTGAATGCAATCTTATAAATAATGTA
TGTGTAGTAGTCCGTGAATAAAAAAGGGAAGGAAAACACACGAAGAAAAG
AATAGTTGTAGAAACTGGAATCAGAGAAACCTTGATTTTAAGTATTCACA
AGTGTGAAAGACACAGAATAAGTACCTAGGTAGCTAAGCGGATGTACGGT
TCTGTTCCTGCACGAGACAAGTTATGATTTAAAGATATATGAAAAGTAGA
AGAAGAAAAAGGAAAATGGAAAGCCAGAAAACCAAAGGAGGGAAAATGCA
GATTTGGAAGGCAGCTTATAGGCCAAAATCAACAGCAAGTTAGTTAAGTT
AATAGATAACAGTGGAGGTGTGATTTATAAACGTAGGCTTAGAGATTTTG
ATTGTAAAATAAAGGAATAGAGTTTGGTTATTCAGTTGTGTTGTCAAGTG
CAGTTAATAGTCCTGAAAGGGTAAGAATGTAATTTTCATTGATTTAGGGT
CAGCAAAAAAGCATGGAGAAGGAACACTATGGAGTTTATTTAACCAAAAG
TTGTTCTTAAGTCAACAGCTCAACAGCTCCCACTAATTTCATCAACAACA
TTCTTTAGAAATAAGAAAGGAAACTCAGAATTGCCAGTGTAGACCTAACT
CTTCATACAAAAATTACGGGAAACGCATATTTGGACTTTGTATCTTATGC
TGCACTCAAGCACTTGAGCCAAAATCCCGCAAAGGCGAGACAAAAATCAG
TTTTTTGAAGTTTGCAAAAAAAACGCCACATAGAAGATCCTTTCAAATTC
AGTATGTGAATAGAGCCAGTAAAAAATACAACTTTTCTATTTTTCCTTTT
TTTGCAAAAGTTCTAGGAATAAAAATAAAGGGATAATGATAATTGAATAC
TATACATCTGTCCATTGGTGATCCACAGCACTATCGTAAAGCTAGAATTG
CTTCGCGTACTCTTCGCTTGAGTAAATGATTGACAGATTGAAGTTTTTCA
TCCCCTGCGAGAGTTCTCAGCTCAATCCTCGGACCGCGCTTAAAATGGTA
GACTGAGCTGTGATAGATCATTTCGATGGAAGTAGTTGGAATGTTTACAA
GGCTCTTGACAGAATATAGTTTTGTTTTATTGTCAATGATGACAGTGCCA
TTATAAATTTTGTTAGATCTGACACATTGATGTTTGTAAGTGCACTTTAT
AGTTTTGATTCCCATTGAAGAATCATATTCTGGTTTTCATGTTATTAGAT
GCTGTTTTAGAGCTTTAGAGCTACTGACTGCTGACATTGAATACCATTCC
TTTCTGAATTAATATAGTTTCATTCAGCGTTGACATTAGACCAACCTACT
ACCTAATTCTCTCTGGATATTAGAAATAAAAAAAGTAGGCTGGAGTGGAA
TATCTGATTGAAACTTTTATGATTAGTGCAAAAGTTGCTTTAAAAATCAG
TTACTCGCACTAGGGGCCACAGAAAATTTATGAAAAAAACCTGCCACTTG
ATGAAATTTATATTTAAAAAAAGAAAGTCGTAAATGAAAAATTTGACAAT
ATACAAAACATATTTTGGTTGGTTGATTAGCTGGCTACTACTGCATGTTA
GCAATTTGTCCTTTTTTTCAAGCTTTCACGTTAATGTAATTGACTTGGAA
TTTGGAACTTCATTCAAGTAAATCTCATCCCTTGTTGTTGCAGGCACATC
CTGTAGATGACTGATGTTTTTTTTTTTTATGAAGCCTAGATTTACTAGTG
TGATTGACTGAAAGTGAAGTTCAGAAATGCTTTAAGGAAAAGTATAATAT
AATCCCTCAGACAAAAAATTCACTGAGGAGGCAAAAAATTATTGGAAATA
AGCTATTAAGGCTATAATGAACATACAAAATAAGGGACCACCCCTAGTTG
TAGGAATAACTTTTTAATAGTTATATAACTTTTGTGGACTAAGTGACTTC
TTTGAAATTGTGTCCAGGTACTTTCTGGAGGTGGATCAGATTTCAAAATA
TAAACTTTAATTGATTAATTGATACTTTCAGCCATGTGTAACAACAGAAG
GGACTAACCTGTGATATGAAATTATGAATTCAAAGAAAACTTTTAATTGG
TCAGCCTAAGCTGAGCATTCAAATAGGTAAAATTTTCTTGTTGTACCAAA
GTATTTCCAGTGCAAATCTGTTGCAAGCTTCAATTTCTGTCATTTATTTT
TTTAACTCGGCAAATCAAACACATGATTTTCATCAAGGGGATTCTTTTTC
TACATCTTTTGAAGTTTTAAAGCCGTTTGCTCAAGTTTTTGTTTATGTTG
AATTTTCTGATACTTTTTATCAGTTTTTGCAATAAAAACATATTTTTCTT
GTTTCCTCTAGGTGGGATTGATGGTGTTATAATGTTATTGGAATTTGATA
AAGTTTACAAAAGTACAGCTANNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGC
GATAACTTTTTATACATATCTCTTATCAGACTTGCAGAAAGCGGACTGCA
GAAAGTTATGAAAAATGGTTTCTAGAATTTAATGAATTATACCGTCAAGT
TAAACAACATGCACACTCACGTCACAACTTGCACAGTCATAACAAACAGA
TCCATCTGGTCTTCATTTAACATTGTTTTAAAGCTTAAAAAACACTGCCA
GTGCTTGGCACAGAAGAGAGGACTCCCAGTTGAAATTAATTGCTACTCCG
CTGCCCGGTTGAATTTATTTATTATGGTCGTGTGTTTATTCTGTCGGTAA
AGCGATCGCCCAAATTCATAGACCAATCAAAAGGGAGTTTAAAGCAAAAT
GAGGGAAAAATGAGCTTCCCTGAATAGTTATGAATTTTAAGTTTTGCTTT
CGATTATCATTTGCGACCAGCAAAGTCTTCAAGATGGTTGTGTGCATGTT
GTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGTCTACTCTGTTTCAGT
ACATCTCTTACATCTGTTAACCCACTTATTAAAGCTATCTAGCTAAGCTC
TATTGGCTGACCTTCCAGCCTCGGCTGGTTTATTCTATGTTAAAAAACTT
CTCAGATGTTATTAAAGTCCAATAACTTAAAAAGTTATGTATCTTATCTT
CTTGAAGGGGAAAATGTTATTTTTAATAAAGACTCCCACAGGTGGGAAAA
TCATTTTATGTGTATGTTTCTGTTCTAAAGGGTCATCTTGCCATATAACA
TTAAATGAATAAGAATATTTGAAAGTTGATGTTTATTTTCATAGTTACAG
CAAACAACAGTTTAAAAAAAGTTTGGTCCTTTATTTACATTAAAAATTTC
ACACTTTACAGGTGCATACACTTCAGTGATTTTTCAAAGCACATAAATTG
AGCTGGGGCCGTTTTTGTAAATTTAGATTGAGTTTTTTGCCCGAGAATAT
CAGCCCAGCAAAGCTGTGCATTTATGAAGCTGGGAGCTGCTGGGGTTCTG
GTCCTAAGGGGTTAAAAGGGAAAAGCTCCAGGAAAAAAAACTGAAAAAGT
AGACAATACAAGTTATTTTTGCTTGTAAACAACAAAAAGTTAAATTTTGC
TATAAAAATTTTTTCTATTTTGGATTGAATTTCGAATATTTGATCTTAGA
TTGAGTATTTTGGCCGGTATATGGACATAAAAAAGTCCTTAGAAAAATCC
CTGCACTTAGAGGATGATTTTCTGTGGCCCCAAATAATTATGTGCCAATT
TGAATAATTAAAAATTCCAACATCAAAACAATGACACATTCATAGTGTGC
AGAGGGGTCCAGTCCCCAGCATTTTTCAGGGGGGGAGGGTTAAGGAAAGT
AGCCCCCAGCTAAATTCTAGAAACATGGCCCCCACCTTCACAAAGCAAAA
TATCAAAGAAATTTTGCATGGAAATTGTCTATAAATTTATTGCGCCTCAG
GCAAAAAATCTTTTCAGGAGGGATAAAACTTTCCCGACAGCATAGATTTT
TAACATAATTTAAAATATCTTCAACCTATCAGCTATGCCCCCAGTTCTAT
TACACAACACTCAGCCCCCCTAGCTAGCTAACCCCCAATATATTTTGAAA
AATACAGCCCCCAATCAAACAAAAATGGTTTAGCCCCCCATCCCTTAGAC
TAGAGTCTACTTCTGGCTGAACTTTGCTTTTTGATAATTTTTTATGGCGC
TGAGTCCATTGAAGTAGACTAGGAGCATTTGGCGAGGTCGCTATTTTGAG
AAAAAATGTTAAAAATCCAAATAACAATAAAACTGCTTGGAGTTGAAAGA
TATAATCAAAAATGAGAAACAACCATCAATAACAGATTTGCAATCCCTTA
TTCTCAAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNATATACTAATTCGAGAGTTTCCAT
CGAAAAAAGTGGAATCTAAGAGGTGTATCACGAAAATCATTTTCTAGCCA
CTTTTTTCGACCTCAGCCGCGCGACTATTTCTGGTCCTTTTAAGGAAAAA
GGAAAAATGCTTACTTGTTTTGAATTTTTTTTAGTAAAAGTTTCATAATT
AAAGTTAGGGAGGAAATACTCACTGTTTACAATATGAAAAGGTCATGAAT
TTTTTAGCTGTTACAAAATAGTTGCTCAAAAATAAAAATTAAAAGGCGAC
ACGTTTTTGTTTATAAGAACATCTAAAATTTTTGAAGCCTTCAGATGTTC
TTATCCCTTTGGGTTTTAAGCCTAAAAATGTTCTTAAACATGTTCTTATT
TTCACCATTTTGTGATCATTTTTACCCATTTTTCTAAGAAATTGGGTGTT
TTCGAGTCCGCAATAGCCTTAAAATGTTCTTATATATTTTGTTCTTATAA
AAGAAACGTGTATTGAATTTCATCACACGATGATTTGGTTCTGAAACTTT
AAACTGTTTTTTATAACATGGTTATAAAAGAAGTTTAAAAGAGAACTTGT
TACATATGATATTTAGTTTCAGTTTTTTATTCAAACCATCCTTTGGCACC
ATGTTGTAATTTTGTCATTTGACTTTGTAGATTTTGCTTCTCTTGCATCT
CATATACTTAAAAACTGACTTAAAACTGCTCAAAAGACATTCACGTTCAT
AAAACTTTCAATTTATAATCTTTTACGAATTGGCTGAAAAAGCAGCAGCA
TTTTACTCTTTACTGGTATGCTAAAAAAGGAAATGTGCTTATAGTGAAAA
GTACAAACTATTTGTTAATGAGAAGGTACTAGTAAAAAAAGATTGTGTTG
TTTTTGTAGAGAGAGACCTTGAGTTTATTCTGTTCAAATAAACTAAAGAT
CTGCAGCAGAGTACAGTATTGTCTTGAGAAATACTATATCAGTAATGGAA
TTATATACTTATTTAGCATATGACAAGTTCTTTTATATTGTAAAAATGTA
ATTTACATGAATTTTGATCGCATTGATGTTTGTATATTATGCGAGCTCAA
ATTGTAAGTTGTAATGATTTTATACAACAAGTGTAAATTGGTTTGCGTTT
GTAATACATTTTTGAACTTTTATCTTGGATAAATGCATCATTCAAGATTT
AGGCTCATTTATCATTGGTTTGTTCTGAAAGTCTAGAGCACAATTCTTTT
TCTTGGGGACACTGCTATTTTCTCTCTAAAACAAAAAAGTTGTTTTCTTT
TCCAAAAAATTTCAAAAAATAACTTCTACTTTCAATGCTTTTCTTTTAAT
CTCGCTTCCTAGAAACCTTTTGCATAAATAATTCATTAGCTTATTATTCA
TTATATTTTGTTTACACTAGCAACCATTATGAAATTTCTTGGAAAGAATA
TCTTTATGTTTAACTTGCAAAAAATAGCAAATATTGTCTGTCTCGAAGGT
ACGCGACCCACCACTCGTTTGCTCATATAACGGATTTATCGTTAGAAGTT
ATGCACCGTTGGAAAAATATTACGAGCAAAGATATTTTAGCATTTCTAAT
TGAAATCTATATTTGAATATTTCATATAAAAATTTCGTACTAAAAAGCGA
AGTTCCAGCTCTTTGTAGTAGGCTTTGAGACAGACTTAAGTTTCTTATTT
TTCTACGAAAAGGATAGAGAAACTCTTAAAATATTTTTAGCATACAATAT
TTAAACTGCTGTTATTACTATAATAGTCATGGCAGGTCATGGTCTGTTTT
ATCAAAGTTAATTATAAGGCTAGATTTATGTGACTTGACTCGACTATATC
TATATTTTGTTTGAGATTTAAAATGTTTTGATAAGCTTTGTCGGTGACTT
AATTCATCCAATGGTTTATGAAGAAAGTAGAACAAACTTTGTGATAACTT
CTCTGTTCATGTTGGAGAAAATCATTTTTGAGATATAATGATACCTAAAA
TCTCTGAATCTTGATATGCTGATGAAGTCACGAATAATGACGGANATTTT
TGAGATACAATGATACCTAAAATCTCTGAATCTTGATATGCTGATGAAGT
CAGCTAATTTCTAATTAAACAGTCGCTTCATTTTTTTATATATTTGCTGC
TTCTACATTTTACGTTTTCTAAAATCTCTGAAAACAGTTCAACAGTTCAA
CAGTTCAAACAGATGAAATTTTCTGTCAAAATCTATACTGTAAAAAAGGT
AGGTACTAAAACAGTTCATCTGATTTGAAAGTTTTATTTGACGTTTTTTG
TTCTTGCGTTTCAGTGAAGTAATCGAAAAACAAAAACATAAAAAAAGAAT
NCCTTTCGTTTCAGTGAAGTAATTTAAAAAACAAAAAAACATAAAAAAGA
ACATTGAAAAAAGTTATGCAAAGATGACACGAAATTCAGTTCAACCGTTT
TTGATTGGAATCGCTGGTGGTAGTTGTTGTGGAAAGACTGAAGTTTGTTC
CACCATTTGTAAAGAATTGGGCCAAAACTCAGAAATTGTGACAAATCGTG
TCACTGTTCTAGCACACAAGAGTTTTTACCGTGAGCTGACTGGTGAAGAA
CGTGAGTTAGCTCAGAATGGGAAATTCAATTTTGATCATCCGACAGCTTT
CGACGATGAGCTCGCTATTCAATCTTTGAAACAACTCAAAGCAGGAAACG
TTGTCAAGATTCCCACGTATAACGTATCCACGCATTCACGTGAAGAAGAG
TATCAGACGATTTATCCGTCAGACGTGATACTTTTTGAAGGAATTCTTAC
GCTGTATAACAAGGAGGTGCGTGATATGTTGGATATGAAAATTTTCGTAG
ATACGGACTCAGATACGCGTNTACGCTGTATAACAAGGAGGTGCGTGATA
TGTTGGATATGAAAATTTTCGTAGATACGGACTCTGATACGCGGCTAGCG
CGCCGTGTGTTACGGGACACCGTAGAACATAAACGGAATATTGACGCCGT
CTTAGATCAATATACGAAATTCGTGAAAAGATCTTTCGAAGATTTTGCAT
TGCCGACTAAAAAATATGCTGACGTCATCATACCACGTGGTGCAGATAAT
TCGGTTGCTGTTGGTTTGATCGTTGAGCATATTAAAGATTTGTTAGGCGA
ACGGCCCACACGTAAAAAGAGAACAGTATCTGAAAGCTCTGCTGGTAGAC
CACATTAGTTATAGTCTATCTGCAAGACAATGGTGTTTGTAGTTACTACG
TCAAATTTACGAAACCAGGTTATTCGCACTCAAACTAGGCACTAGTAAAT
TCTGTACTGGGAGTGTGAAATGATAATTTTTGCTGGCAGAGATTTATATG
ATACATATCTTTTAATTATATACTGCAGATCACGATATATTTAAAGATAA
ATAAACCAGCTGCGCTGGAAGCTCCGGCTTAAGAGATTAAAAGATGTGAA
GAATGAGTTTGTTGAGTTGTGTTAGAACGTTGCCCACAAACTAATA

Coding sequence (CDS) from alignment at sc0001411:37113..51158-

>TCONS_00036086 ID=TCONS_00036086|Name=TCONS_00036086|organism=Clytia hemisphaerica|type=CDS|length=1422bp|location=Sequence derived from alignment at sc0001411:37113..51158- (Clytia hemisphaerica)
GTGCGTGATATGTTGGATATGAAAATTTTCGTAGATACGGACTCTGATAC
GCGGCTAGCGCGCCGTGTGTTACGGGACACCGTAGAACATAAACGGAATA
TTGACGCCGTCTTAGATCAATATACGAAATTCGTGAAAAGATCTTTCGAA
GATTTTGCATTGCCGACTAAAAAATATGCTGACGTCATCATACCACGTGG
TGCAGATAATTCGGTTGCTGTTGGTTTGATCGTTGAGCATATTAAAGATT
TGTTAGGCGAACGGCCCACACGTAAAAAGAGAACAGTATCTGAAAGCTCT
GCTGGTAGACCACATTAGATGACACGAAATTCAGTTCAACCGTTTTTGAT
TGGAATCGCTGGTGGTAGTTGTTGTGGAAAGACTGAAGTTTGTTCCACCA
TTTGTAAAGAATTGGGCCAAAACTCAGAAATTGTGACAAATCGTGTCACT
GTTCTAGCACACAAGAGTTTTTACCGTGAGCTGACTGGTGAAGAACGTGA
GTTAGCTCAGAATGGGAAATTCAATTTTGATCATCCGACAGCTTTCGACG
ATGAGCTCGCTATTCAATCTTTGAAACAACTCAAAGCAGGAAACGTTGTC
AAGATTCCCACGTATAACGTATCCACGCATTCACGTGAAGAAGAGTATCA
GACGATTTATCCGTCAGACGTGATACTTTTTGAAGGAATTCTTACGCTGT
ATAACAAGGAGGTGCGTGATATGTTGGATATGAAAATTTTCGTAGATACG
GACTCTGATACGCGGCTAGCGCGCCGTGTGTTACGGGACACCGTAGAACA
TAAACGGAATATTGACGCCGTCTTAGATCAATATACGAAATTCGTGAAAA
GATCTTTCGAAGATTTTGCATTGCCGACTAAAAAATATGCTGACGTCATC
ATACCACGTGGTGCAGATAATTCGGTTGCTGTTGGTTTGATCGTTGAGCA
TATTAAAGATTTGTTAGGCGAACGGCCCACACGTAAAAAGAGAACAGTAT
CTGAAAGCTCTGCTGGTAGACCACATTAGATGACACGAAATTCAGTTCAA
CCGTTTTTGATTGGAATCGCTGGTGGTAGTTGTTGTGGAAAGACTGAAGT
TTGTTCCACCATTTGTAAAGAATTGGGCCAAAACTCAGAAATTGTGACAA
ATCGTGTCACTGTTCTAGCACACAAGAGTTTTTACCGTGAGCTGACTGGT
GAAGAACGTGAGTTAGCTCAGAATGGGAAATTCAATTTTGATCATCCGAC
AGCTTTCGACGATGAGCTCGCTATTCAATCTTTGAAACAACTCAAAGCAG
GAAACGTTGTCAAGATTCCCACGTATAACGTATCCACGCATTCACGTGAA
GAAGAGTATCAGACGATTTATCCGTCAGACGTGATACTTTTTGAAGGAAT
TCTTACGCTGTATAACAAGGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021216XLOC_021216Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036086-proteinTCONS_00036086-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036086-exon-sc0001411-1575043694:51140..51158TCONS_00036086-exon-sc0001411-1575043694:51140..51158Clytia hemisphaericaexon
TCONS_00036086-exon-sc0001411-1575043694:37793..38244TCONS_00036086-exon-sc0001411-1575043694:37793..38244Clytia hemisphaericaexon
TCONS_00036086-exon-sc0001411-1575043694:37113..37718TCONS_00036086-exon-sc0001411-1575043694:37113..37718Clytia hemisphaericaexon
TCONS_00036086-exon-sc0001411-1510915933:51140..51158TCONS_00036086-exon-sc0001411-1510915933:51140..51158Clytia hemisphaericaexon
TCONS_00036086-exon-sc0001411-1510915933:37793..38244TCONS_00036086-exon-sc0001411-1510915933:37793..38244Clytia hemisphaericaexon
TCONS_00036086-exon-sc0001411-1510915933:37113..37718TCONS_00036086-exon-sc0001411-1510915933:37113..37718Clytia hemisphaericaexon
TCONS_00036086-exon-sc0001411-1491911889:51140..51158TCONS_00036086-exon-sc0001411-1491911889:51140..51158Clytia hemisphaericaexon
TCONS_00036086-exon-sc0001411-1491911889:37793..38244TCONS_00036086-exon-sc0001411-1491911889:37793..38244Clytia hemisphaericaexon
TCONS_00036086-exon-sc0001411-1491911889:37113..37718TCONS_00036086-exon-sc0001411-1491911889:37113..37718Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001411supercontigsc0001411:37113..51158 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
8.47964	8.52642	5.1973	5.42423	36.8975	29.2662	30.362	29.0962	2.30209	15.6312	4.14395	4.50112	4.69418	3.47545	8.76535	4.04772	16.1186	6.44995	16.5096	8.4456	16.3405	20.996	16.93	9.66661	25.732	33.4001	2.67012	11.7015	9.14738	7.05963
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000764Uridine_kinase-like
IPR006083PRK/URK
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0016301kinase activity
GO:0005524ATP binding
Vocabulary: Biological Process
TermDefinition
GO:0008152metabolic process
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008152 metabolic process
molecular_function GO:0005524 ATP binding
molecular_function GO:0016301 kinase activity
Blast
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BLAST of TCONS_00036086 vs. Swiss-Prot (Human)
Match: UCK2 (Uridine-cytidine kinase 2 OS=Homo sapiens GN=UCK2 PE=1 SV=1)

HSP 1 Score: 273.863 bits (699), Expect = 1.088e-89
Identity = 131/247 (53.04%), Postives = 178/247 (72.06%), Query Frame = 1 
Query:   88 NSVQPFLIGIAGGSCCGKTEVCSTICKELGQNS-EIVTNRVTVLAHKSFYRELTGEERELAQNGKFNFDHPTAFDDELAIQSLKQLKAGNVVKIPTYNVSTHSREEEYQTIYPSDVILFEGILTLYNKEVRDMLDMKIFVDTDSDTRLARRVLRDTVEHKRNIDAVLDQYTKFVKRSFEDFALPTKKYADVIIPRGADNSVAVGLIVEHIKDLLGERPTR-------------KKRTVSESSAGRPH 786
            N  +PFLIG++GG+  GK+ VC+ I + LGQN  +    +V +L+  SFYR LT E++  A  G+FNFDHP AFD+EL +++LK++  G  V+IP Y+  +HSR+EE  T+YP+DV+LFEGIL  Y++EVRD+  MK+FVDTD+DTRL+RRVLRD  E  R+++ +L QY  FVK +FE+F LPTKKYADVIIPRGADN VA+ LIV+HI+D+L   P++             +KR  SESS+ RPH
Sbjct:   16 NGGEPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYRVLTSEQKAKALKGQFNFDHPDAFDNELILKTLKEITEGKTVQIPVYDFVSHSRKEETVTVYPADVVLFEGILAFYSQEVRDLFQMKLFVDTDADTRLSRRVLRDISERGRDLEQILSQYITFVKPAFEEFCLPTKKYADVIIPRGADNLVAINLIVQHIQDILNGGPSKRQTNGCLNGYTPSRKRQASESSS-RPH 261
The following BLAST results are available for this feature:
BLAST of TCONS_00036086 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
UCK21.088e-8953.04Uridine-cytidine kinase 2 OS=Homo sapiens GN=UCK2 ... [more]
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