TCONS_00036085 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036085
Unique NameTCONS_00036085
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1065

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036085 ID=TCONS_00036085|Name=TCONS_00036085|organism=Clytia hemisphaerica|type=transcript|length=1065bp
Tattagtttgtgggcaacgttctaacacaactcaacaaactcattcttca
catcttttaatctcttaagccggagcttccagcgcagctggtttatttat
ctTTAAATATATCGTGATCTGCAGTATATAATTAAAAGATATGTATCATA
TAAATCTCTGCCAgcaaaaattatcatttcacACTCCCAGTACAGAATTT
ACTAGTGCCTAGTTTGAGTGCGAATAACCTGGTTTCGTAAATTTGACGTA
GTAACTACAAACACCATTGTCTTGCAGATAGACTATAACTAATGTGGTCT
ACCAGCAGAGCTTTCAGATACTGTTCTCTTTTTACGTGTGGGCCGTTCGC
CTAACAAATCTTTAATATGCTCAACGATCAAACCAACAGCAACCGAATTA
TCTGCACCACGTggtatgatgacgtcagcatatttttTAGTCGGCAATGC
AAAATCTTCGAAAGATCTTTTCACGAATTTCGTATATTGATCTAAGACGG
CGTCAATATTCCGTTTATGTTCTACGGTGTCCCGTAACACACGGCGCGCT
AGCCGCGTATCAGAGTCCGTATCTACGAAAATTTTCATATCCAACATATC
ACGCACCTCCTTGTTATACAGCgtaagaattccttcaaaaagtATCACGT
CTGACGGATAAATCGTCTGATACTCTTCTTCACGTGAATGCGTGGATACG
TTATACGTGGGAATCTTGACAACGTTTCCTGCTTTGAGTTGTTTCAAAGA
TTGAATAGCGAGCTCATCGTCGAAAGCTGTCGGATGATCAAAATTGAATT
TCCCATTCTGAGCTAACTCACGTTCTTCACCAGTCAGCTCACGGTAAAAA
CTCTTGTGTGCTAGAACAGTGACACGATTTGTCACAATTTCTGAGTTTTG
GCCCAATTCTTTACAAATGGTGGAACAAACTTCAGTCTTTCCACAACAAC
TACCACCAGCGATTCCAATCAAAAACGGTTGAACTGAATTTCGTGTCATC
TTTGCATAACTTTTTTCAATgttcttttttatgtttttttgttttttaaa
ttactTCACTGAAAC
Run BLAST on NCBI

transcript from alignment at sc0001411:37113..38251+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036085 ID=TCONS_00036085|Name=TCONS_00036085|organism=Clytia hemisphaerica|type=transcript|length=1139bp|location=Sequence derived from alignment at sc0001411:37113..38251+ (Clytia hemisphaerica)
Tattagtttgtgggcaacgttctaacacaactcaacaaactcattcttca
catcttttaatctcttaagccggagcttccagcgcagctggtttatttat
ctTTAAATATATCGTGATCTGCAGTATATAATTAAAAGATATGTATCATA
TAAATCTCTGCCAgcaaaaattatcatttcacACTCCCAGTACAGAATTT
ACTAGTGCCTAGTTTGAGTGCGAATAACCTGGTTTCGTAAATTTGACGTA
GTAACTACAAACACCATTGTCTTGCAGATAGACTATAACTAATGTGGTCT
ACCAGCAGAGCTTTCAGATACTGTTCTCTTTTTACGTGTGGGCCGTTCGC
CTAACAAATCTTTAATATGCTCAACGATCAAACCAACAGCAACCGAATTA
TCTGCACCACGTggtatgatgacgtcagcatatttttTAGTCGGCAATGC
AAAATCTTCGAAAGATCTTTTCACGAATTTCGTATATTGATCTAAGACGG
CGTCAATATTCCGTTTATGTTCTACGGTGTCCCGTAACACACGGCGCGCT
AGCCGCGTATCAGAGTCCGTATCTACGAAAATTTTCATATCCAACATATC
ACGCACCTCCTTGTTATACAGCGTANACGCGTATCTGAGTCCGTATCTAC
GAAAATTTTCATATCCAACATATCACGCACCTCCTTGTTATACAGCgtaa
gaattccttcaaaaagtATCACGTCTGACGGATAAATCGTCTGATACTCT
TCTTCACGTGAATGCGTGGATACGTTATACGTGGGAATCTTGACAACGTT
TCCTGCTTTGAGTTGTTTCAAAGATTGAATAGCGAGCTCATCGTCGAAAG
CTGTCGGATGATCAAAATTGAATTTCCCATTCTGAGCTAACTCACGTTCT
TCACCAGTCAGCTCACGGTAAAAACTCTTGTGTGCTAGAACAGTGACACG
ATTTGTCACAATTTCTGAGTTTTGGCCCAATTCTTTACAAATGGTGGAAC
AAACTTCAGTCTTTCCACAACAACTACCACCAGCGATTCCAATCAAAAAC
GGTTGAACTGAATTTCGTGTCATCTTTGCATAACTTTTTTCAATgttctt
ttttatgtttttttgttttttaaattactTCACTGAAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021215XLOC_021215Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036085-exon-sc0001411-1491911889:37113..37707TCONS_00036085-exon-sc0001411-1491911889:37113..37707Clytia hemisphaericaexon
TCONS_00036085-exon-sc0001411-1510915933:37113..37707TCONS_00036085-exon-sc0001411-1510915933:37113..37707Clytia hemisphaericaexon
TCONS_00036085-exon-sc0001411-1575043694:37113..37707TCONS_00036085-exon-sc0001411-1575043694:37113..37707Clytia hemisphaericaexon
TCONS_00036085-exon-sc0001411-1491911889:37782..38251TCONS_00036085-exon-sc0001411-1491911889:37782..38251Clytia hemisphaericaexon
TCONS_00036085-exon-sc0001411-1510915933:37782..38251TCONS_00036085-exon-sc0001411-1510915933:37782..38251Clytia hemisphaericaexon
TCONS_00036085-exon-sc0001411-1575043694:37782..38251TCONS_00036085-exon-sc0001411-1575043694:37782..38251Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001411supercontigsc0001411:37113..38251 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
8.20906	5.60478	3.59079	0.0194813	0	0	0	0	27.8141	12.6703	15.8376	18.179	19.764	15.1238	14.1392	16.1608	55.0249	29.7968	11.325	27.7822	40.4838	42.1297	20.2929	30.3835	0	0	23.4668	5.09787	13.0292	14.9535
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000764Uridine_kinase-like
IPR006083PRK/URK
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0016301kinase activity
GO:0005524ATP binding
Vocabulary: Biological Process
TermDefinition
GO:0008152metabolic process
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008152 metabolic process
molecular_function GO:0005524 ATP binding
molecular_function GO:0016301 kinase activity
Blast
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BLAST of TCONS_00036085 vs. Swiss-Prot (Human)
Match: UCK2 (Uridine-cytidine kinase 2 OS=Homo sapiens GN=UCK2 PE=1 SV=1)

HSP 1 Score: 274.248 bits (700), Expect = 6.829e-90
Identity = 131/247 (53.04%), Postives = 178/247 (72.06%), Query Frame = -1 
Query:  292 NSVQPFLIGIAGGSCCGKTEVCSTICKELGQNS-EIVTNRVTVLAHKSFYRELTGEERELAQNGKFNFDHPTAFDDELAIQSLKQLKAGNVVKIPTYNVSTHSREEEYQTIYPSDVILFEGILTLYNKEVRDMLDMKIFVDTDSDTRLARRVLRDTVEHKRNIDAVLDQYTKFVKRSFEDFALPTKKYADVIIPRGADNSVAVGLIVEHIKDLLGERPTR-------------KKRTVSESSAGRPH 990
            N  +PFLIG++GG+  GK+ VC+ I + LGQN  +    +V +L+  SFYR LT E++  A  G+FNFDHP AFD+EL +++LK++  G  V+IP Y+  +HSR+EE  T+YP+DV+LFEGIL  Y++EVRD+  MK+FVDTD+DTRL+RRVLRD  E  R+++ +L QY  FVK +FE+F LPTKKYADVIIPRGADN VA+ LIV+HI+D+L   P++             +KR  SESS+ RPH
Sbjct:   16 NGGEPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYRVLTSEQKAKALKGQFNFDHPDAFDNELILKTLKEITEGKTVQIPVYDFVSHSRKEETVTVYPADVVLFEGILAFYSQEVRDLFQMKLFVDTDADTRLSRRVLRDISERGRDLEQILSQYITFVKPAFEEFCLPTKKYADVIIPRGADNLVAINLIVQHIQDILNGGPSKRQTNGCLNGYTPSRKRQASESSS-RPH 261
The following BLAST results are available for this feature:
BLAST of TCONS_00036085 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
UCK26.829e-9053.04Uridine-cytidine kinase 2 OS=Homo sapiens GN=UCK2 ... [more]
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