TCONS_00036081 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036081
Unique NameTCONS_00036081
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length634

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036081 ID=TCONS_00036081|Name=TCONS_00036081|organism=Clytia hemisphaerica|type=transcript|length=634bp
tttttcttttgttttaaaaatatctCACCTTTTGATTGCGTTACACTACC
CCCTGCGAAACATCTCTCTTGCTGgcgagaaaaatatttcgcaaATCTAT
TGTTTCGCGCGTATTTTTGTTTATGACACACTTActctttttcggctttt
atcTTTATGGCAGTATTACCCTTATGcgaaataaaagaataatggTCTGG
AAATCGAGACTTAGCATCCGGCGAGTTTGAATACAAAAAATGTGAGTGGG
AATTTTTTTCGTGCCCTTCGTGCCCGGCCTTCGTGCCCTCGTGCCTCAAC
caaaaaagttgataaatttcaaaaagatatgatcgttttttttcgaaata
ttaaTTGATATTAATTTGCCTCCATATAGAGGGTCACGGTCATCGATCGC
ATTGGCCAAAACATGGCCGAAACTAttaaatggtaaaagggaatttcccc
aaatacgaagttccgatttttacggccaactAAATTTTTCCGGGAAAATG
GCTTCAGctactttttagagaaccttggactctatctttgtgcaaacaat
tagaaaaaaacaatgaagcAATTTTACAATCAAAAACCCTACTTTTAggc
atttttggccaaaatttgccccaaaaaaaatttc
Run BLAST on NCBI

transcript from alignment at sc0001410:13727..14360

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036081 ID=TCONS_00036081|Name=TCONS_00036081|organism=Clytia hemisphaerica|type=transcript|length=634bp|location=Sequence derived from alignment at sc0001410:13727..14360 (Clytia hemisphaerica)
gaaattttttttggggcaaattttggccaaaaatgccTAAAAGTAGGGTT
TTTGATTGTAAAATTgcttcattgtttttttctaattgtttgcacaaaga
tagagtccaaggttctctaaaaagtagCTGAAGCCATTTTCCCGGAAAAA
TTTagttggccgtaaaaatcggaacttcgtatttggggaaattccctttt
accatttaaTAGTTTCGGCCATGTTTTGGCCAATGCGATCGATGACCGTG
ACCCTCTATATGGAGGCAAATTAATATCAAttaatatttcgaaaaaaaac
gatcatatctttttgaaatttatcaacttttttgGTTGAGGCACGAGGGC
ACGAAGGCCGGGCACGAAGGGCACGAAAAAAATTCCCACTCACATTTTTT
GTATTCAAACTCGCCGGATGCTAAGTCTCGATTTCCAGAccattattctt
ttatttcgCATAAGGGTAATACTGCCATAAAgataaaagccgaaaaagag
TAAGTGTGTCATAAACAAAAATACGCGCGAAACAATAGATttgcgaaata
tttttctcgcCAGCAAGAGAGATGTTTCGCAGGGGGTAGTGTAACGCAAT
CAAAAGGTGagatatttttaaaacaaaagaaaaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021211XLOC_021211Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036081-exon-sc0001410-1491911889:13727..14360TCONS_00036081-exon-sc0001410-1491911889:13727..14360Clytia hemisphaericaexon
TCONS_00036081-exon-sc0001410-1510915933:13727..14360TCONS_00036081-exon-sc0001410-1510915933:13727..14360Clytia hemisphaericaexon
TCONS_00036081-exon-sc0001410-1575043694:13727..14360TCONS_00036081-exon-sc0001410-1575043694:13727..14360Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001410supercontigsc0001410:13727..14360 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.500862	0.48842	0.94517	0.462351	0.225147	0.533742	0.107323	0.301423	0	0	0.0845734	0.11119	0.055518	0	0.616213	0.152606	0.689325	0.192692	0.177476	0.371431	0.322841	0	0	0.174034	0.448128	0.159977	0	0.244317	0.092653	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00036081 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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