|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00036080 ID=TCONS_00036080|Name=TCONS_00036080|organism=Clytia hemisphaerica|type=transcript|length=1009bp
atttaaaagttttatggTATATTGCATATAAAATTATTTACATAAATTGA
AAAGCATAAGAtccattttaatttcatttaaaattctATTTGTCAAAATG
GATATCATTTAAGAAATATAAATTCTAATCTTCGAAAGTCAGAtatcaat
gaaaataaaaaaatgatcacTGTATGGTGATGGCATCCATTGAGCTGGAG
TATCGCGATGATCGTCAAAAATAAgatctaaaatatttccatcaATATGT
GTTGGATGTTTGCATCTTTGATGAAAGATATTTGGTGGTAGTGCTTCATT
GACGATTTCTTTGTTGTCAGGTAAATTGAAATCACCAAGAACAATGGTTG
AGTAATTTTCCGCATCAATCTGTCGCCGTAGATTATCAAGCTCAATTTGA
AGAGATTGTGCAAATAAAGGAACAGAGCTGGTTGGAGGTCTATATACCaa
aacaatcaaataatgtTTGTCGTTTATGCTCACCAAAAGTGGAAGTAATT
CTAATTCACTATCAGTGTTCAGTTCTTTTATCACATTTACTTGATTTGTA
TCGTAACTGATTGCTAAGCCATGGGCAGTTCTCTGATGAATTGTTTTCCA
ATGTTGTAGTTTTTCACTATCCTCAATGTTCCCTCTAGCGTTATTACCAG
TCTCTGTGAAACATAATAAATAACATCTGGATGTATGCAagtcatttgaa
agaaaatgattgataTGTAAATTCCACGATCTAATATTGTACAGACACAA
ATTTTTACTATTCATTTCCTCAAGTGGATGTACTATTGATAACACTTTGT
TTGTCCTcatttcttccatttctttctTTGCTTCTGAATTTACAACAATA
CGactcagagtcgaaaatttcgcaaagtATTTGATTATAGTggggccact
atgtcgcgaaaaagcttctcgtgtgcagcagcttgtgcaaagggatttta
tgaattaatattgttccttgaatgtagaagatcaaaatttgagaggtggg
gccgggtgg Run BLAST on NCBI protein sequence of TCONS_00036080-protein >TCONS_00036080-protein ID=TCONS_00036080-protein|Name=TCONS_00036080-protein|organism=Clytia hemisphaerica|type=polypeptide|length=226bp
MEEMRTNKVLSIVHPLEEMNSKNLCLYNIRSWNLHINHFLSNDLHTSRCY
LLCFTETGNNARGNIEDSEKLQHWKTIHQRTAHGLAISYDTNQVNVIKEL
NTDSELELLPLLVSINDKHYLIVLVYRPPTSSVPLFAQSLQIELDNLRRQ
IDAENYSTIVLGDFNLPDNKEIVNEALPPNIFHQRCKHPTHIDGNILDLI
FDDHRDTPAQWMPSPYSDHFFIFIDI Run BLAST on NCBI transcript from alignment at sc0001410:2745..3753 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00036080 ID=TCONS_00036080|Name=TCONS_00036080|organism=Clytia hemisphaerica|type=transcript|length=1009bp|location=Sequence derived from alignment at sc0001410:2745..3753 (Clytia hemisphaerica)
ccacccggccccacctctcaaattttgatcttctacattcaaggaacaat
attaattcataaaatccctttgcacaagctgctgcacacgagaagctttt
tcgcgacatagtggccccACTATAATCAAATactttgcgaaattttcgac
tctgagtCGTATTGTTGTAAATTCAGAAGCAAagaaagaaatggaagaaa
tgAGGACAAACAAAGTGTTATCAATAGTACATCCACTTGAGGAAATGAAT
AGTAAAAATTTGTGTCTGTACAATATTAGATCGTGGAATTTACAtatcaa
tcattttctttcaaatgactTGCATACATCCAGATGTTATTTATTATGTT
TCACAGAGACTGGTAATAACGCTAGAGGGAACATTGAGGATAGTGAAAAA
CTACAACATTGGAAAACAATTCATCAGAGAACTGCCCATGGCTTAGCAAT
CAGTTACGATACAAATCAAGTAAATGTGATAAAAGAACTGAACACTGATA
GTGAATTAGAATTACTTCCACTTTTGGTGAGCATAAACGACAAacattat
ttgattgttttGGTATATAGACCTCCAACCAGCTCTGTTCCTTTATTTGC
ACAATCTCTTCAAATTGAGCTTGATAATCTACGGCGACAGATTGATGCGG
AAAATTACTCAACCATTGTTCTTGGTGATTTCAATTTACCTGACAACAAA
GAAATCGTCAATGAAGCACTACCACCAAATATCTTTCATCAAAGATGCAA
ACATCCAACACATATtgatggaaatattttagatcTTATTTTTGACGATC
ATCGCGATACTCCAGCTCAATGGATGCCATCACCATACAgtgatcatttt
tttattttcattgataTCTGACTTTCGAAGATTAGAATTTATATTTCTTA
AATGATATCCATTTTGACAAATagaattttaaatgaaattaaaatggaTC
TTATGCTTTTCAATTTATGTAAATAATTTTATATGCAATATAccataaaa
cttttaaat Coding sequence (CDS) from alignment at sc0001410:2745..3753 >TCONS_00036080 ID=TCONS_00036080|Name=TCONS_00036080|organism=Clytia hemisphaerica|type=CDS|length=681bp|location=Sequence derived from alignment at sc0001410:2745..3753 (Clytia hemisphaerica)
atggaagaaatgAGGACAAACAAAGTGTTATCAATAGTACATCCACTTGA
GGAAATGAATAGTAAAAATTTGTGTCTGTACAATATTAGATCGTGGAATT
TACAtatcaatcattttctttcaaatgactTGCATACATCCAGATGTTAT
TTATTATGTTTCACAGAGACTGGTAATAACGCTAGAGGGAACATTGAGGA
TAGTGAAAAACTACAACATTGGAAAACAATTCATCAGAGAACTGCCCATG
GCTTAGCAATCAGTTACGATACAAATCAAGTAAATGTGATAAAAGAACTG
AACACTGATAGTGAATTAGAATTACTTCCACTTTTGGTGAGCATAAACGA
CAAacattatttgattgttttGGTATATAGACCTCCAACCAGCTCTGTTC
CTTTATTTGCACAATCTCTTCAAATTGAGCTTGATAATCTACGGCGACAG
ATTGATGCGGAAAATTACTCAACCATTGTTCTTGGTGATTTCAATTTACC
TGACAACAAAGAAATCGTCAATGAAGCACTACCACCAAATATCTTTCATC
AAAGATGCAAACATCCAACACATATtgatggaaatattttagatcTTATT
TTTGACGATCATCGCGATACTCCAGCTCAATGGATGCCATCACCATACAg
tgatcatttttttattttcattgataTCTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00036080-exon-sc0001410-1491911889:2745..3753 | TCONS_00036080-exon-sc0001410-1491911889:2745..3753 | Clytia hemisphaerica | exon |
| TCONS_00036080-exon-sc0001410-1510915933:2745..3753 | TCONS_00036080-exon-sc0001410-1510915933:2745..3753 | Clytia hemisphaerica | exon |
| TCONS_00036080-exon-sc0001410-1575043694:2745..3753 | TCONS_00036080-exon-sc0001410-1575043694:2745..3753 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001410 | supercontig | sc0001410:2745..3753 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR005135 | Endo/exonuclease/phosphatase |
Blast
The following BLAST results are available for this feature:
|
