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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00036079 ID=TCONS_00036079|Name=TCONS_00036079|organism=Clytia hemisphaerica|type=transcript|length=2371bp
CTCGATTGTACCTTAAATACTCTGAAAGAATATCTTCGATATAAAACGGA
AATCTGCTGGAATACAATATCTCAATCTTGAGACACTGAACGAAATTACA
AAGTCTGAAACTTTTTAATATTGTGGCTGAGTCATCTACCGAGAATACAC
AATGAACTCCATTGTGGTTCTAACCACGCTGCTATTTCTACTGGTATCTA
CATCGTATGGTGAGATCGATGCTGAAAACAAACGCGAATCTGTTGTTGTT
GATTCATCAAATTCAAACAATGCTTTAGAAGAGATCAAAAAAGTTGCTGA
CAAAGCTATTGAAACATTGGAAAAAGAACTTTTAAAGAAAAAATCTTCTT
TAATTAACACTGGTGATGCATCCAAAGAAGTCCAACAAAATGAAAATGCT
GACATCAACAAAAAGAAGAATTCAGTTGTAACCAAGGACGAGGGAAAGGA
TATTGTTGTTAAGGAAATAAAAAACACTGCAGCAATGACTACAGATACCG
GAATGGATGAAAAGCGTTCTGCCGACAGACCATGGATCAAATTAAAGAAA
GAATCTAACCTACCCTGGAATGCCGCTGAAAGTAAAAAAGAATCACTACC
TTTCTACATGTCCAAAAAGAAAGGTAAAAAGGAATATCAACGCCAACACC
TTCCATGGGAAATGAAAACTAACAAGATCAACAAGAAAAATGCGTTACCG
TTTTATGACGTCAAGAAAAGCGAACTTCCTTTTTATATGGCGAAAAAAAG
CGAACTTCCTTTCTATATGGCAAAGAAGGAAGCCTTACCTTGGTATAGTC
AAGCAAATAAGAAGGATGCATTGCCGTTCTACATAGCAAAGAAAAGTGAG
CTCCCATTTTACATGGCGAAAAAAAGTGCACTTCCATTTTATATGGCAAA
GAAAAATGCTCTACCCGTGAAATTTTTCTTGTCAAAGAAAAACGCGTTAC
CGTTTTACATGTCCAAGAAAGACGAGCTACCTTTCTACATGAAAAAGTCA
GCTCTCCCGTTTTACATGGCTAAAAAAGAAGCTCTTCCTTTCTATATGAA
GAAATCTACGTTACCATTTTATATGGCTAAAAAAGAATCATTACCGTTTT
ACAACACAAAGAAGTCCGCATCTCAAGCTTTACCCTTCTATGATGTTAAG
AAGTCCGCCCTACCTTTTTACATGAAGAAGTCCGCCCTACCATTTTACAG
TGCAAAGAAGTCCGCCCTCCCATTTGATGGTGTCAAAAAGAGTACCCTCC
CCTTTTACCACGCCAAGAAATCAGCCCTTCCTTTCTATATTGCTAAAAAA
AGCGAGTTACCGTTTTACAGCTCGAAGAAATCCGCCCTACCGTTTTATGA
CGTCAAGAAATCCGCCCTACCGTTTTATGACGTAAAGAAGGAAACTCTGC
CATTTTACATGGCCTAGGAAAATACTTTCCCATTCTTCTCGAAGGAGAGT
CAACCTTTTGCTTTATAATAACATATTAAACGCTGTATTGAAAATAACGG
ttcaaaataattaaaacaCTTAAGAAGAATAAGAAGATTCTGAAGACATT
CTTAGAACATTCTTAGCTTATTCTCCgttaaaatattttggttttgtAAT
CAAAGAtcctagaaattttcaaatttgatgttttatttttgaatattcaG
TGGAATATACTCATTATATCTTAAGAGTATATATTTTCGTCGCGAAtcgc
gaatttttttttgagaaacgTGTTTCGCGAGTTCTAATTTACGCGATTGC
GACTTTCcacgtgtattaaatttcgtgaACCACTAAATTCGATATTATCA
AACAAGAGTATTAAAAAAGCAAGAAAAGGATTGCTTTTGCCTGAATCACA
ACGTGATAGGTGcaaaaaaggtgtcaaaattGCGGAATAAAATGGTGACA
AAAAGTAAGCCATTGGGAAAATACTTTGGcgtattttcaaggtttttcac
gtctatcatttttgcaatttttgaaagtcaaacagtactaaattttgcga
aattttacCTAAAAACTCACGGAATCAAGTACACGCGAAAACTTAGTACC
CAGGAAAACAAATACGCTTaaggtatttttgtttttttatttttcaagca
CTAACACTATAATCGTCCCTGTGGGGATGCTATTAGGCCCGTGGGGgtgg
ggtactagggttgcgagctgacggggagGTGCCACCTGACTTTCGATcct
ggacccttaccgggactaaaaagcaaaaaacaatggacaattttgtaaat
tttacgacccttattaggaaaaatttttccgaccctcAGTGGGACtgata
tttgattttctgaattttctgacccttagcgggactttggaaatccaaaa
aaggcaccctcaaaggcggca Run BLAST on NCBI transcript from alignment at sc0001410:56317..58969- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00036079 ID=TCONS_00036079|Name=TCONS_00036079|organism=Clytia hemisphaerica|type=transcript|length=2653bp|location=Sequence derived from alignment at sc0001410:56317..58969- (Clytia hemisphaerica)
CTCGATTGTACCTTAAATACTCTGAAAGAATATCTTCGATATAAAACGGA
AATCTGCTGGAATACAATATCTCAATCTTGAGACACTGAACGAAATTACA
AAGTCTGAAACTTTTTAATATTGTGGCTGAGTCATCTACCGAGAATACAC
AATGAACTCCATTGTGGTTCTAACCACGCTGCTATTTCTACTGGTATCTA
CATCGTATGGTGAGATCGATGCTGAAAACAAACGCGAATCTGTTGTTGTT
GATTCATCAAATTCAAACAATGCTTTAGAAGAGATCAAAAAAGTTGCTGA
CAAAGCTATTGAAACATTGGAAAAAGAACTTTTAAAGAAAAAATCTTCTT
TAATTAACACTGGTGATGCATCCAAAGAAGTCCAACAAAATGAAAATGCT
GACATCAACAAAAAGAAGAATTCAGTTGTAACCAAGGACGAGGGAAAGGA
TATTGTTGTTAAGGAAATAAAAAACACTGCAGCAATGACTACAGATACCG
GAATGGATGAAAAGCGTTCTGCCGACAGACCATGGATCAAATTAAAGAAA
GAATCTAACCTACCCTGGAATGCCGCTGAAAGTAAAAAAGAATCACTACC
TTTCTACATGTCCAAAAAGAAAGGTAAAAAGGAATATCAACGCCAACACC
TTCCATGGGAAATGAAAACTAACAAGATCAACAAGAAAAATGCGTTACCG
TTTTATGACGTCAAGAAAAGCGAACTTCCTTTTTATATGGCGAAAAAAAG
CGAACTTCCTTTCTATATGGCAAAGAAGGAAGCCTTACCTTGGTATAGTC
AAGCAAATAAGAAGGATGCATTGCCGTTCTACATAGCAAAGAAAAGTGAG
CTCCCATTTTACATGGCGAAAAAAAGTGCACTTCCATTTTATATGGCAAA
GAAAAATGCTCTACCCGTGAAATTTTTCTTGTCAAAGAAAAACGCGTTAC
CGTTTTACATGTCCAAGAAAGACGAGCTACCTTTCTACATGAAAAAGTCA
GCTCTCCCGTTTTACATGGCTAAAAAAGAAGCTCTTCCTTTCTATATGAA
GAAATCTACGTTACCATTTTATATGGCTAAAAAAGAATCATTACCGTTTT
ACAACACAAAGAAGTCCGCATCTCAAGCTTTACCCTTCTATGATGTTAAG
AAGTCCGCCCTACCTTTTTACATGAAGAAGTCCGCCCTACCATTTTACAT
GAAGAAGTCCGCCCTACCATCTTACAATGCGAAGAAGTCCGCCCTGCCTT
TTTACGTGAAGAAGTCCGCCCTACCTTTTTACATGAAGAAGTCCGCCCTA
CCTTTTTACATGAAGAAGTCCACTTTACCATTTTACATGAAGAAGTCCGC
CCTCCCATTTTACAATGCAAAGAAGTCCACCCTACCATTTTACACTGCGA
AGAAGTCTACCCTACCATTTTACATGAAGAAGTCCGCCCTACCATTTTAC
ATTGCAAAGAAGTCCGCCCTAACATTTTACAGTGCAAAGAAGTCCGCCCT
CCCATTTGATGGTGTCAAAAAGAGTACCCTCCCCTTTTACCACGCCAAGA
AATCAGCCCTTCCTTTCTATATTGCTAAAAAAAGCGAGTTACCGTTTTAC
AGCTCGAAGAAATCCGCCCTACCGTTTTATGACGTCAAGAAATCCGCCCT
ACCGTTTTATGACGTAAAGAAGGAAACTCTGCCATTTTACATGGCCTAGG
AAAATACTTTCCCATTCTTCTCGAAGGAGAGTCAACCTTTTGCTTTATAA
TAACATATTAAACGCTGTATTGAAAATAACGGTTCAAAATAATTAAAACA
CTTAAGAAGAATAAGAAGATTCTGAAGACATTCTTAGAACATTCTTAGCT
TATTCTCCGTTAAAATATTTTGGTTTTGTAATCAAAGATCCTAGAAATTT
TCAAATTTGATGTTTTATTTTTGAATATTCAGTGGAATATACTCATTATA
TCTTAAGAGTATATATTTTCGTCGCGAATCGCGAATTTTTTTTTGAGAAA
CGTGTTTCGCGAGTTCTAATTTACGCGATTGCGACTTTCCACGTGTATTA
AATTTCGTGAACCACTAAATTCGATATTATCAAACAAGAGTATTAAAAAA
GCAAGAAAAGGATTGCTTTTGCCTGAATCACAACGTGATAGGTGCAAAAA
AGGTGTCAAAATTGCGGAATAAAATGGTGACAAAAAGTAAGCCATTGGGA
AAATACTTTGGCGTATTTTCAAGGTTTTTCACGTCTATCATTTTTGCAAT
TTTTGAAAGTCAAACAGTACTAAATTTTGCGAAATTTTACCTAAAAACTC
ACGGAATCAAGTACACGCGAAAACTTAGTACCCAGGAAAACAAATACGCT
TAAGGTATTTTTGTTTTTTTATTTTTCAAGCACTAACACTATAATCGTCC
CTGTGGGGATGCTATTAGGCCCGTGGGGGTGGGGTACTAGGGTTGCGAGC
TGACGGGGAGGTGCCACCTGACTTTCGATCCTGGACCCTTACCGGGACTA
AAAAGCAAAAAACAATGGACAATTTTGTAAATTTTACGACCCTTATTAGG
AAAAATTTTTCCGACCCTCAGTGGGACTGATATTTGATTTTCTGAATTTT
CTGACCCTTAGCGGGACTTTGGAAATCCAAAAAAGGCACCCTCAAAGGCG
GCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00036079-exon-sc0001410-1575043694:57799..58969 | TCONS_00036079-exon-sc0001410-1575043694:57799..58969 | Clytia hemisphaerica | exon |
| TCONS_00036079-exon-sc0001410-1575043694:57520..57546 | TCONS_00036079-exon-sc0001410-1575043694:57520..57546 | Clytia hemisphaerica | exon |
| TCONS_00036079-exon-sc0001410-1575043694:56317..57489 | TCONS_00036079-exon-sc0001410-1575043694:56317..57489 | Clytia hemisphaerica | exon |
| TCONS_00036079-exon-sc0001410-1510915933:57799..58969 | TCONS_00036079-exon-sc0001410-1510915933:57799..58969 | Clytia hemisphaerica | exon |
| TCONS_00036079-exon-sc0001410-1510915933:57520..57546 | TCONS_00036079-exon-sc0001410-1510915933:57520..57546 | Clytia hemisphaerica | exon |
| TCONS_00036079-exon-sc0001410-1510915933:56317..57489 | TCONS_00036079-exon-sc0001410-1510915933:56317..57489 | Clytia hemisphaerica | exon |
| TCONS_00036079-exon-sc0001410-1491911889:57799..58969 | TCONS_00036079-exon-sc0001410-1491911889:57799..58969 | Clytia hemisphaerica | exon |
| TCONS_00036079-exon-sc0001410-1491911889:57520..57546 | TCONS_00036079-exon-sc0001410-1491911889:57520..57546 | Clytia hemisphaerica | exon |
| TCONS_00036079-exon-sc0001410-1491911889:56317..57489 | TCONS_00036079-exon-sc0001410-1491911889:56317..57489 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001410 | supercontig | sc0001410:56317..58969 - |
Blast
The following BLAST results are available for this feature:
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