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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00036076 ID=TCONS_00036076|Name=TCONS_00036076|organism=Clytia hemisphaerica|type=transcript|length=2375bp
AGAATATCTTCGATATAAAACGGAAATCTGCTGGAATACAATATCTCAAT
CTTGAGACACTGAACGAAATTACAAAGTCTGAAACTTTTTAATATTGTGG
CTGAGTCATCTACCGAGAATACACAATGAACTCCATTGTGGTTCTAACCA
CGCTGCTATTTCTACTGGTATCTACATCGTATGGTGAGATCGATGCTGAA
AACAAACGCGAATCTGTTGTTGTTGATTCATCAAATTCAAACAATGCTTT
AGAAGAGATCAAAAAAGTTGCTGACAAAGCTATTGAAACATTGGAAAAAG
AACTTTTAAAGAAAAAATCTTCTTTAATTAACACTGGTGATGCATCCAAA
GAAGTCCAACAAAATGAAAATGCTGACATCAACAAAAAGAAGAATTCAGT
TGTAACCAAGGACGAGGGAAAGGATATTGTTGTTAAGGAAATAAAAAACA
CTGCAGCAATGACTACAGATACCGGAATGGATGAAAAGCGTTCTGCCGAC
AGACCATGGATCAAATTAAAGAAAGAATCTAACCTACCCTGGAATGCCGC
TGAAAGTAAAAAAGAATCACTACCTTTCTACATGTCCAAAAAGAAAGGTA
AAAAGGAATATCAACGCCAACACCTTCCATGGGAAATGAAAACTAACAAG
ATCAACAAGAAAAATGCGTTACCGTTTTATGACGTCAAGAAAAGCGAACT
TCCTTTTTATATGGCGAAAAAAAGCGAACTTCCTTTCTATATGGCAAAGA
AGGAAGCCTTACCTTGGTATAGTCAAGCAAATAAGAAGGATGCATTGCCG
TTCTACATAGCAAAGAAAAGTGAGCTCCCATTTTACATGGCGAAAAAAAG
TGCACTTCCATTTTATATGGCAAAGAAAAATGCTCTACCCGTGAAATTTT
TCTTGTCAAAGAAAAACGCGTTACCGTTTTACATGTCCAAGAAAGACGAG
CTACCTTTCTACATGAAAAAGTCAGCTCTCCCGTTTTACATGGCTAAAAA
AGAAGCTCTTCCTTTCTATATGAAGAAATCTACGTTACCATTTTATATGG
CTAAAAAAGAATCATTACCGTTTTACAACACAAAGAAGTCCGCATCTCAA
GCTTTACCCTTCTATGATGTTAAGAAGTCCGCCCTACCTTTTTACATGAA
GAAGTCCGCCCTACCATTTTACATTGCAAAGAAGTCCGCCCTAACATTTT
ACAGTGCAAAGAAGTCCGCCCTCCCATTTGATGGTGTCAAAAAGAGTACC
CTCCCCTTTTACCACGCCAAGAAATCAGCCCTTCCTTTCTATATTGCTAA
AAAAAGCGAGTTACCGTTTTACAGCTCGAAGAAATCCGCCCTACCGTTTT
ATGACGTCAAGAAATCCGCCCTACCGTTTTATGACGTAAAGAAGGAAACT
CTGCCATTTTACATGGCCTAGGAAAATACTTTCCCATTCTTCTCGAAGGA
GAGTCAACCTTTTGCTTTATAATAACATATTAAACGCTGTATTGAAAATA
ACGGttcaaaataattaaaacaCTTAAGAAGAATAAGAAGATTCTGAAGA
CATTCTTAGAACATTCTTAGCTTATTCTCCgttaaaatattttggttttg
tAATCAAAGAtcctagaaattttcaaatttgatgttttatttttgaatat
tcaGTGGAATATACTCATTATATCTTAAGAGTATATATTTTCGTCGCGAA
tcgcgaatttttttttgagaaacgTGTTTCGCGAGTTCTAATTTACGCGA
TTGCGACTTTCcacgtgtattaaatttcgtgaACCACTAAATTCGATATT
ATCAAACAAGAGTATTAAAAAAGCAAGAAAAGGATTGCTTTTGCCTGAAT
CACAACGTGATAGGTGcaaaaaaggtgtcaaaattGCGGAATAAAATGGT
GACAAAAAGTAAGCCATTGGGAAAATACTTTGGcgtattttcaaggtttt
tcacgtctatcatttttgcaatttttgaaagtcaaacagtactaaatttt
gcgaaattttacCTAAAAACTCACGGAATCAAGTACACGCGAAAACTTAG
TACCCAGGAAAACAAATACGCTTaaggtatttttgtttttttatttttca
agcaCTAACACTATAATCGTCCCTGTGGGGATGCTATTAGGCCCGTGGGG
gtggggtactagggttgcgagctgacggggagGTGCCACCTGACTTTCGA
Tcctggacccttaccgggactaaaaagcaaaaaacaatggacaattttgt
aaattttacgacccttattaggaaaaatttttccgaccctcAGTGGGACt
gatatttgattttctgaattttctgacccttagcgggactttggaaatcc
aaaaaaggcaccctcaaaggcggca Run BLAST on NCBI transcript from alignment at sc0001410:56317..58943- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00036076 ID=TCONS_00036076|Name=TCONS_00036076|organism=Clytia hemisphaerica|type=transcript|length=2627bp|location=Sequence derived from alignment at sc0001410:56317..58943- (Clytia hemisphaerica)
AGAATATCTTCGATATAAAACGGAAATCTGCTGGAATACAATATCTCAAT
CTTGAGACACTGAACGAAATTACAAAGTCTGAAACTTTTTAATATTGTGG
CTGAGTCATCTACCGAGAATACACAATGAACTCCATTGTGGTTCTAACCA
CGCTGCTATTTCTACTGGTATCTACATCGTATGGTGAGATCGATGCTGAA
AACAAACGCGAATCTGTTGTTGTTGATTCATCAAATTCAAACAATGCTTT
AGAAGAGATCAAAAAAGTTGCTGACAAAGCTATTGAAACATTGGAAAAAG
AACTTTTAAAGAAAAAATCTTCTTTAATTAACACTGGTGATGCATCCAAA
GAAGTCCAACAAAATGAAAATGCTGACATCAACAAAAAGAAGAATTCAGT
TGTAACCAAGGACGAGGGAAAGGATATTGTTGTTAAGGAAATAAAAAACA
CTGCAGCAATGACTACAGATACCGGAATGGATGAAAAGCGTTCTGCCGAC
AGACCATGGATCAAATTAAAGAAAGAATCTAACCTACCCTGGAATGCCGC
TGAAAGTAAAAAAGAATCACTACCTTTCTACATGTCCAAAAAGAAAGGTA
AAAAGGAATATCAACGCCAACACCTTCCATGGGAAATGAAAACTAACAAG
ATCAACAAGAAAAATGCGTTACCGTTTTATGACGTCAAGAAAAGCGAACT
TCCTTTTTATATGGCGAAAAAAAGCGAACTTCCTTTCTATATGGCAAAGA
AGGAAGCCTTACCTTGGTATAGTCAAGCAAATAAGAAGGATGCATTGCCG
TTCTACATAGCAAAGAAAAGTGAGCTCCCATTTTACATGGCGAAAAAAAG
TGCACTTCCATTTTATATGGCAAAGAAAAATGCTCTACCCGTGAAATTTT
TCTTGTCAAAGAAAAACGCGTTACCGTTTTACATGTCCAAGAAAGACGAG
CTACCTTTCTACATGAAAAAGTCAGCTCTCCCGTTTTACATGGCTAAAAA
AGAAGCTCTTCCTTTCTATATGAAGAAATCTACGTTACCATTTTATATGG
CTAAAAAAGAATCATTACCGTTTTACAACACAAAGAAGTCCGCATCTCAA
GCTTTACCCTTCTATGATGTTAAGAAGTCCGCCCTACCTTTTTACATGAA
GAAGTCCGCCCTACCATTTTACATGAAGAAGTCCGCCCTACCATCTTACA
ATGCGAAGAAGTCCGCCCTGCCTTTTTACGTGAAGAAGTCCGCCCTACCT
TTTTACATGAAGAAGTCCGCCCTACCTTTTTACATGAAGAAGTCCACTTT
ACCATTTTACATGAAGAAGTCCGCCCTCCCATTTTACAATGCAAAGAAGT
CCACCCTACCATTTTACACTGCGAAGAAGTCTACCCTACCATTTTACATG
AAGAAGTCCGCCCTACCATTTTACATTGCAAAGAAGTCCGCCCTAACATT
TTACAGTGCAAAGAAGTCCGCCCTCCCATTTGATGGTGTCAAAAAGAGTA
CCCTCCCCTTTTACCACGCCAAGAAATCAGCCCTTCCTTTCTATATTGCT
AAAAAAAGCGAGTTACCGTTTTACAGCTCGAAGAAATCCGCCCTACCGTT
TTATGACGTCAAGAAATCCGCCCTACCGTTTTATGACGTAAAGAAGGAAA
CTCTGCCATTTTACATGGCCTAGGAAAATACTTTCCCATTCTTCTCGAAG
GAGAGTCAACCTTTTGCTTTATAATAACATATTAAACGCTGTATTGAAAA
TAACGGTTCAAAATAATTAAAACACTTAAGAAGAATAAGAAGATTCTGAA
GACATTCTTAGAACATTCTTAGCTTATTCTCCGTTAAAATATTTTGGTTT
TGTAATCAAAGATCCTAGAAATTTTCAAATTTGATGTTTTATTTTTGAAT
ATTCAGTGGAATATACTCATTATATCTTAAGAGTATATATTTTCGTCGCG
AATCGCGAATTTTTTTTTGAGAAACGTGTTTCGCGAGTTCTAATTTACGC
GATTGCGACTTTCCACGTGTATTAAATTTCGTGAACCACTAAATTCGATA
TTATCAAACAAGAGTATTAAAAAAGCAAGAAAAGGATTGCTTTTGCCTGA
ATCACAACGTGATAGGTGCAAAAAAGGTGTCAAAATTGCGGAATAAAATG
GTGACAAAAAGTAAGCCATTGGGAAAATACTTTGGCGTATTTTCAAGGTT
TTTCACGTCTATCATTTTTGCAATTTTTGAAAGTCAAACAGTACTAAATT
TTGCGAAATTTTACCTAAAAACTCACGGAATCAAGTACACGCGAAAACTT
AGTACCCAGGAAAACAAATACGCTTAAGGTATTTTTGTTTTTTTATTTTT
CAAGCACTAACACTATAATCGTCCCTGTGGGGATGCTATTAGGCCCGTGG
GGGTGGGGTACTAGGGTTGCGAGCTGACGGGGAGGTGCCACCTGACTTTC
GATCCTGGACCCTTACCGGGACTAAAAAGCAAAAAACAATGGACAATTTT
GTAAATTTTACGACCCTTATTAGGAAAAATTTTTCCGACCCTCAGTGGGA
CTGATATTTGATTTTCTGAATTTTCTGACCCTTAGCGGGACTTTGGAAAT
CCAAAAAAGGCACCCTCAAAGGCGGCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00036076-exon-sc0001410-1575043694:57772..58943 | TCONS_00036076-exon-sc0001410-1575043694:57772..58943 | Clytia hemisphaerica | exon |
| TCONS_00036076-exon-sc0001410-1575043694:56317..57519 | TCONS_00036076-exon-sc0001410-1575043694:56317..57519 | Clytia hemisphaerica | exon |
| TCONS_00036076-exon-sc0001410-1510915933:57772..58943 | TCONS_00036076-exon-sc0001410-1510915933:57772..58943 | Clytia hemisphaerica | exon |
| TCONS_00036076-exon-sc0001410-1510915933:56317..57519 | TCONS_00036076-exon-sc0001410-1510915933:56317..57519 | Clytia hemisphaerica | exon |
| TCONS_00036076-exon-sc0001410-1491911889:57772..58943 | TCONS_00036076-exon-sc0001410-1491911889:57772..58943 | Clytia hemisphaerica | exon |
| TCONS_00036076-exon-sc0001410-1491911889:56317..57519 | TCONS_00036076-exon-sc0001410-1491911889:56317..57519 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001410 | supercontig | sc0001410:56317..58943 - |
Blast
The following BLAST results are available for this feature:
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