TCONS_00036070 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036070
Unique NameTCONS_00036070
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length399

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036070 ID=TCONS_00036070|Name=TCONS_00036070|organism=Clytia hemisphaerica|type=transcript|length=399bp
CTCAATTTATGAGAAAGAACGCTTACCGACATACTGTCTTCATCTTCATC
ACTGATGTCGTCACTATCATCTTCACAAGAGCTTGACAAACTTGGTGGTG
ATGGGATCGGCATGTTTCTCAATTGATTCCCAATGGAATTCATCATTGAA
GTTGGGTTTACAACATTACTTAAAAGAGCTTGTTCTTGTTCTGTTGTTAC
CTCCATTTATTTTATCTTTCGTGAAGATTTATTGTCCGATTGTTTGTTTC
TTCATTAAATTTCATTTTGCTTCTCCTGTGTCATTTCTTTCAGCTAAAAT
TTGTTGTAGCGATCGCTGAATATTTTTGTTCTATAAACACGAGGGTATAA
ACCCGGGGTCGACAAAAAATTCGAAGAGGAGAAAATCGCTCAGATTTCG
Run BLAST on NCBI

transcript from alignment at sc0001409:43389..43787

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036070 ID=TCONS_00036070|Name=TCONS_00036070|organism=Clytia hemisphaerica|type=transcript|length=399bp|location=Sequence derived from alignment at sc0001409:43389..43787 (Clytia hemisphaerica)
CGAAATCTGAGCGATTTTCTCCTCTTCGAATTTTTTGTCGACCCCGGGTT
TATACCCTCGTGTTTATAGAACAAAAATATTCAGCGATCGCTACAACAAA
TTTTAGCTGAAAGAAATGACACAGGAGAAGCAAAATGAAATTTAATGAAG
AAACAAACAATCGGACAATAAATCTTCACGAAAGATAAAATAAATGGAGG
TAACAACAGAACAAGAACAAGCTCTTTTAAGTAATGTTGTAAACCCAACT
TCAATGATGAATTCCATTGGGAATCAATTGAGAAACATGCCGATCCCATC
ACCACCAAGTTTGTCAAGCTCTTGTGAAGATGATAGTGACGACATCAGTG
ATGAAGATGAAGACAGTATGTCGGTAAGCGTTCTTTCTCATAAATTGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021206XLOC_021206Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036070-exon-sc0001409-1491911889:43389..43787TCONS_00036070-exon-sc0001409-1491911889:43389..43787Clytia hemisphaericaexon
TCONS_00036070-exon-sc0001409-1510915933:43389..43787TCONS_00036070-exon-sc0001409-1510915933:43389..43787Clytia hemisphaericaexon
TCONS_00036070-exon-sc0001409-1575043694:43389..43787TCONS_00036070-exon-sc0001409-1575043694:43389..43787Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001409supercontigsc0001409:43389..43787 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
7.469	7.28345	0.845678	0.827364	14.1013	14.7247	13.6837	18.4291	4.40579	8.38082	7.5671	5.09867	10.1832	9.54358	6.89186	7.28224	8.5506	7.90205	2.7789	5.81583	12.457	14.794	14.1303	13.8197	13.432	18.2501	6.14489	7.37774	17.409	19.4263
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00036070 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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