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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00036066 ID=TCONS_00036066|Name=TCONS_00036066|organism=Clytia hemisphaerica|type=transcript|length=1286bp
CATCTGcaatcaaaataaaagtcatGGACGATTATTCAACCACCTCTCTC
ATACAAGCATTCACGAGATTTTCATGCGACCATGGCTATCCAAAACGCCT
ATTGTGCGATGAGGGTAGTCAACTTCTGAATGGATGCAAGGAGATGCGTA
TCGATTTCCATGACCTGAGATCTAAGTTGATGCAGAACCTACATATTGAT
TTTGATGCATGCCCTGTTCAAGGGCACAGCATGCACAGCATGCACAGCAA
GGTTGAACGTAAAATCAAGGAggtcaatcaatcaatcgagAAGAGCCTTC
AAAATCATCGCCTATCTATACTACAATAGGAAACACTCAGCTCAAGTATC
gcaaatcaaatcaataatctTCCTATTGCCATCAGTGTCTAGATTGGATC
ACCCCGAATCGTCTCTTGTTGGGTCCAAACGAGAGTCAACGTTAACAAAT
CAATATACCTATGGAATCATCAAAAGCCTGGAGTTCGGTGATGACATTCC
TCCGAGAAAAGCAGTTATTCAATACAAAAACGAAAACGAGGATATCAGGC
GAGAAACAAATCGTTCAGTACGTGGTCTTGTTATTATTCACCCTATTGAT
GAATGTGATTTTATGGTCGAGCTTGATGAAATGGCTAAGAATGTGGACAA
GAAATTtgtcaattaaatttttttcctttttggtgGGGAATGTAAAgtga
cttttatcaaaatatatttctaaaacaaaaataaaaagtacaaaatgtag
tttataaatcatgaaacaaaaaatttattgcACCTTGGAAATAGTGTTTA
TTTATTATATACTTACTGTAACTTATCTCATTTGTGTGCCATTAGGCTAG
GCTAGCTAGACTAGGctatatttattcatttattttattttagtatGTTA
GGCACACCTGGTTTCCATGGCCTCATTTTCAGTATAATGTCACAGTGGGA
ACTCAGTCTATTTAAGGCCTCACTTCAGTCACACCTCAGAGCTACCATTT
TGTGTCATGTCATGCTGACTGACCATAATGGCATCATAATTCATAAGGCT
CTAACCTTAAagtaattttcaattcaatgtGTCAATGTTCAACTTCAACT
CAAGTCAATCAATACTCAATTCATTCACAGCATTTTTATATTGGCTACCT
GAGAGGTTTCATTTTTGTTCTTGTTCTTTGGCAGCCATCTTGTTTTTGCT
TCCaggcagccattttgttttgttctttcaGTTCACACTGATACATTAGG
GACTTGCCTTGACATGATTCATAGGTTCAGTATTTC Run BLAST on NCBI protein sequence of TCONS_00036066-protein >TCONS_00036066-protein ID=TCONS_00036066-protein|Name=TCONS_00036066-protein|organism=Clytia hemisphaerica|type=polypeptide|length=153bp
MHALFKGTACTACTARLNVKSRRSINQSRRAFKIIAYLYYNRKHSAQVSQ
IKSIIFLLPSVSRLDHPESSLVGSKRESTLTNQYTYGIIKSLEFGDDIPP
RKAVIQYKNENEDIRRETNRSVRGLVIIHPIDECDFMVELDEMAKNVDKK
FVN Run BLAST on NCBI transcript from alignment at sc0001409:30600..31885 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00036066 ID=TCONS_00036066|Name=TCONS_00036066|organism=Clytia hemisphaerica|type=transcript|length=1286bp|location=Sequence derived from alignment at sc0001409:30600..31885 (Clytia hemisphaerica)
GAAATACTGAACCTATGAATCATGTCAAGGCAAGTCCCTAATGTATCAGT
GTGAACtgaaagaacaaaacaaaatggctgcctGGAAGCAAAAACAAGAT
GGCTGCCAAAGAACAAGAACAAAAATGAAACCTCTCAGGTAGCCAATATA
AAAATGCTGTGAATGAATTGAGTATTGATTGACTTGAGTTGAAGTTGAAC
ATTGACacattgaattgaaaattactTTAAGGTTAGAGCCTTATGAATTA
TGATGCCATTATGGTCAGTCAGCATGACATGACACAAAATGGTAGCTCTG
AGGTGTGACTGAAGTGAGGCCTTAAATAGACTGAGTTCCCACTGTGACAT
TATACTGAAAATGAGGCCATGGAAACCAGGTGTGCCTAACatactaaaat
aaaataaatgaataaatatagCCTAGTCTAGCTAGCCTAGCCTAATGGCA
CACAAATGAGATAAGTTACAGTAAGTATATAATAAATAAACACTATTTCC
AAGGTgcaataaattttttgtttcatgatttataaactacattttgtact
ttttatttttgttttagaaatatattttgataaaagtcacTTTACATTCC
CcaccaaaaaggaaaaaaatttaattgacaAATTTCTTGTCCACATTCTT
AGCCATTTCATCAAGCTCGACCATAAAATCACATTCATCAATAGGGTGAA
TAATAACAAGACCACGTACTGAACGATTTGTTTCTCGCCTGATATCCTCG
TTTTCGTTTTTGTATTGAATAACTGCTTTTCTCGGAGGAATGTCATCACC
GAACTCCAGGCTTTTGATGATTCCATAGGTATATTGATTTGTTAACGTTG
ACTCTCGTTTGGACCCAACAAGAGACGATTCGGGGTGATCCAATCTAGAC
ACTGATGGCAATAGGAagattattgatttgatttgcGATACTTGAGCTGA
GTGTTTCCTATTGTAGTATAGATAGGCGATGATTTTGAAGGCTCTTctcg
attgattgattgaccTCCTTGATTTTACGTTCAACCTTGCTGTGCATGCT
GTGCATGCTGTGCCCTTGAACAGGGCATGCATCAAAATCAATATGTAGGT
TCTGCATCAACTTAGATCTCAGGTCATGGAAATCGATACGCATCTCCTTG
CATCCATTCAGAAGTTGACTACCCTCATCGCACAATAGGCGTTTTGGATA
GCCATGGTCGCATGAAAATCTCGTGAATGCTTGTATGAGAGAGGTGGTTG
AATAATCGTCCatgacttttattttgattgCAGATG Coding sequence (CDS) from alignment at sc0001409:30600..31885 >TCONS_00036066 ID=TCONS_00036066|Name=TCONS_00036066|organism=Clytia hemisphaerica|type=CDS|length=462bp|location=Sequence derived from alignment at sc0001409:30600..31885 (Clytia hemisphaerica)
ttaattgacaAATTTCTTGTCCACATTCTTAGCCATTTCATCAAGCTCGA
CCATAAAATCACATTCATCAATAGGGTGAATAATAACAAGACCACGTACT
GAACGATTTGTTTCTCGCCTGATATCCTCGTTTTCGTTTTTGTATTGAAT
AACTGCTTTTCTCGGAGGAATGTCATCACCGAACTCCAGGCTTTTGATGA
TTCCATAGGTATATTGATTTGTTAACGTTGACTCTCGTTTGGACCCAACA
AGAGACGATTCGGGGTGATCCAATCTAGACACTGATGGCAATAGGAagat
tattgatttgatttgcGATACTTGAGCTGAGTGTTTCCTATTGTAGTATA
GATAGGCGATGATTTTGAAGGCTCTTctcgattgattgattgaccTCCTT
GATTTTACGTTCAACCTTGCTGTGCATGCTGTGCATGCTGTGCCCTTGAA
CAGGGCATGCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00036066-exon-sc0001409-1491911889:30600..31885 | TCONS_00036066-exon-sc0001409-1491911889:30600..31885 | Clytia hemisphaerica | exon |
| TCONS_00036066-exon-sc0001409-1510915933:30600..31885 | TCONS_00036066-exon-sc0001409-1510915933:30600..31885 | Clytia hemisphaerica | exon |
| TCONS_00036066-exon-sc0001409-1575043694:30600..31885 | TCONS_00036066-exon-sc0001409-1575043694:30600..31885 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001409 | supercontig | sc0001409:30600..31885 . |
Blast
The following BLAST results are available for this feature:
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