TCONS_00036063 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036063
Unique NameTCONS_00036063
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1848

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036063 ID=TCONS_00036063|Name=TCONS_00036063|organism=Clytia hemisphaerica|type=transcript|length=1848bp
TGCAAAACATCTTTGTTGGCTTGAGTGTCCTTATGTTCTTCGCATACAAG
AACATGTCTTCTTGGTNCCTTGGCAAATGTTGGTAGCCGCAGACTTCTAG
TGCAACGTTCCTTGTACTTCTGCAAAACATCTTTGTTGGCTTGAGTGTCC
TTATGTTCTTCGCATACAAGAACATGTTTTCTTGGGATGTCATTGTCGTG
GGATTGATGTGGACAAACAAAATCGTGTTGGCAGCGTCCCTCTTTGTGTT
TGCCAGTTGATATGTCAGCCCCTGGATAGAGGCATTGGAAGCAGTAGCCT
TTCCCTTTGAGTAGTGAAAGACGTTTGGCTGGTGTCAGTTCCACGAATTG
CTTGCAGGTGTGGTACTGGATGAGTCGTGTTCCTTTTGGTCTAGATGTTG
ATATGTGATCTGCTGATCCATCGGCTGAGTTGCAGATGATTGATGGTGAT
GGCGGGTTGGAATTGTATCCTCCTCGTCGATTTGTTTTGGATGAATCTTG
CTTAGACTTTGATTGGTCTGATGGTGGTCTTTTTGACGAGGATTCTGATG
GACCCATGATGATCACCTTTTGTTGTTGTAGCTTCAGTTCTTTCTCTAGG
AATTCGACCAATCTCTTCCATATGACGTGAGGTGAGGTGCTTTCATCCAT
TGTTGATAACCATCTTGATAGGCGAGAATCTCCGAGCAGTGCGTAGATGC
GTTGAATACCGTCCCCATAGTAGAGGTATTCCTGGATGTTGTGAGTATCC
GCGATGAGAATGAGATCTTTGATGAGGTTGATGACTTTGCTCAATGCGAA
CGCAATATTGTCTGCGCCCTTGATCTTTGAAATATTGTCGATGGTGTTGA
GTTGATTCAACTTCCTAGTCAGTAGATGTTTAACGTCTCCGTAGGCAAAT
TGAAGTTGTCCCCAGATACTCTCGATATCGGTAAGACTTTTGACCATGCT
CAGAGCAGGGTCTTTGAGATAGCTGTTTTTGAGCAAGTCAGGTAGCAAAT
GTCGAGGTGTAGATCTCTCATGAAGCTTAACAAAGTTTGATTTGAACGTA
TAAAAATCGACACTGGAATCACTTGAGCCGGAGAATTTTTCGGGGCGTAA
AAGACTTAACTTTGTAGACGTCACGGTCTTTCACAAATTTGAGAAGTTGA
GTGGTGTAGCTTGACTTGGATTTCAGCAATAAATCGTATTGTTCACCAAG
GTCCTTAATTTCAGTTACGTCCTTGGTTTCTGAGACTGGTGTTTGAAGAA
TAGATTCATACCTCTCTGCAGCTTTGTCGACTTTCTCAGCTTTTGATGAT
AGTTCAGTTTTTAACTGGATAAGTTCATTGTCAGTTAAATCATTAAAGGT
AATatcaaaatcctttttaagTCCATTTATAGTTCTTTTCAACTCATTGA
TTGCAAAACGTCTGGATTGCTCCTTGGAATTGGTGACGTCCAGAGTAGGT
TGAATTGATTTGATATCTGGTTTGAGGTTCTTTGAATCCTTGAAGTATTC
CTTGATAGCAAGTAGGGTGGGATTAATCTCATGTAATAATTCAGGGTCGC
TTTTGGCTTTCTTCAAGATCCCATCAAGACGGTATAATTTGTTTCTTAGG
CCTTGAAGTCGCTGGATGGTGACTGAGATGTGATCTGCATTTTCGGCAAT
GATGGAATTTTCATCGATCAGGTCAAGTGCTTCATGCATTAAAACGTGTG
CATCTAGTTCTATATCTTCTATGGAACGAGacgattgattaattgattga
gaACTTGTGTTTGGGTTAGACGACTCatcGGGTTGAGACATTACGTCGTT
AGTGGTTGGCGTCAAATGGACTCTTTGACCGGTTGAGTTGAGTTGTGA
Run BLAST on NCBI

transcript from alignment at sc0001409:35665..37666+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036063 ID=TCONS_00036063|Name=TCONS_00036063|organism=Clytia hemisphaerica|type=transcript|length=2002bp|location=Sequence derived from alignment at sc0001409:35665..37666+ (Clytia hemisphaerica)
TGCAAAACATCTTTGTTGGCTTGAGTGTCCTTATGTTCTTCGCATACAAG
AACATGTCTTCTTGGTNCCTTGGCAAATGTTGGTAGCCGCAGACTTCTAG
TGCAACGTTCCTTGTACTTCTGCAAAACATCTTTGTTGGCTTGAGTGTCC
TTATGTTCTTCGCATACAAGAACATGTTTTCTTGGGATGTCATTGTCGTG
GGATTGATGTGGACAAACAAAATCGTGTTGGCAGCGTCCCTCTTTGTGTT
TGCCAGTTGATATGTCAGCCCCTGGATAGAGGCATTGGAAGCAGTAGCCT
TTCCCTTTGAGTAGTGAAAGACGTTTGGCTGGTGTCAGTTCCACGAATTG
CTTGCAGGTGTGGTACTGGATGAGTCGTGTTCCTTTTGGTCTAGATGTTG
ATATGTGATCTGCTGATCCATCGGCTGAGTTGCAGATGATTGATGGTGAT
GGCGGGTTGGAATTGTATCCTCCTCGTCGATTTGTTTTGGATGAATCTTG
CTTAGACTTTGATTGGTCTGATGGTGGTCTTTTTGACGAGGATTCTGATG
GACCCATGATGATCACCTTTTGTTGTTGTAGCTTCAGTTCTTTCTCTAGG
AATTCGACCAATCTCTTCCATATGACGTGAGGTGAGGTGCTTTCATCCAT
TGTTGATAACCATCTTGATAGGCGAGAATCTCCGAGCAGTGCGTAGATGC
GTTGAATACCGTCCCCATAGTAGAGGTATTCCTGGATGTTGTGAGTATCC
GCGATGAGAATGAGATCTTTGATGAGGTTGATGACTTTGCTCAATGCGAA
CGCAATATTGTCTGCGCCCTTGATCTTTGAAATATTGTCGATGGTGTTGA
GTTGATTCAACTTCCTAGTCAGTAGATGTTTAACGTCTCCGTAGGCAAAT
TGAAGTTGTCCCCAGATACTCTCGATATCGGTAAGACTTTTGACCATGCT
CAGAGCAGGGTCTTTGAGATAGCTGTTTTTGAGCAAGTCAGGTAGCAAAT
GTCGAGGTGTAGATCTCTCATGAAGCTTAACAAAGTTTGATTTGAACGTA
TAAAAATCGACACTGGAATCACTTGAGCCGGAGAATTTTTCGGGGCGTAA
AAGACTTAACTTTGTAGACGTCACGGTCTTTCACAAATTTGAGAAGTTGA
GTGGTGTAGCTTGACTTGGATTTCAGCAATAAATCGTATTGTTCACCAAG
GTCCTTGATTTCAGTTATGTCCTTGGTTTCTGAGACTGGTANCAGCAATG
AATCGTATTGTTCACCAAGGTCCTTAATTTCAGTTACGTCCTTGGTTTCT
GAGACTGGTGTTTGAAGAATAGATTCATACCTCTCTGCAGCTTTGTCGAC
TTTCTCAGCTTTTGATGATAGTTCAGTTTTTAACTGGATAAGTTCATTGT
CAGTTAAATCATTAAAGGTAATatcaaaatcctttttaagTCCATTTATA
GTTCTTTTCAACTCATTGATTGCAAAACGTCTGGATTGCTCCTTGGAATT
GGTGACGTCCAGAGTAGGTTGAATTGATTTGATATCTGGTTTGAGGTTCT
TTGAATCCTTGAAGTATTCCTTGATAGCAAGTAGGGTGGGATTAATCTCA
TGTAATAATTCAGGGTCGCTTTTGGCTTTCTTCAAGATCCCATCAAGACG
GTATAATTTGTTTCTTAGGCCTTGAAGTCGCTGGATGGTGACTGAGATGT
GATCTGCATTTTCGGCAATGATGGAATTTTCATCGATCAGGTCAAGTGCT
TCATGCATTAAAACGTGTGCATCTAGTTCTATATCTTCTATGGAACGAGa
cgattgattaattgattgagaACTTGTGTTTGGGTTAGACGACTCATCGA
GAAtcgtaaagtagcgttgacttttattagcctttgttgctacctgttcg
tcaacttgaaataaactattacatacatacatcGGGTTGAGACATTACGT
CGTTAGTGGTTGGCGTCAAATGGACTCTTTGACCGGTTGAGTTGAGTTGT
GA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021199XLOC_021199Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036063-exon-sc0001409-1491911889:35665..36864TCONS_00036063-exon-sc0001409-1491911889:35665..36864Clytia hemisphaericaexon
TCONS_00036063-exon-sc0001409-1510915933:35665..36864TCONS_00036063-exon-sc0001409-1510915933:35665..36864Clytia hemisphaericaexon
TCONS_00036063-exon-sc0001409-1575043694:35665..36864TCONS_00036063-exon-sc0001409-1575043694:35665..36864Clytia hemisphaericaexon
TCONS_00036063-exon-sc0001409-1491911889:36934..37509TCONS_00036063-exon-sc0001409-1491911889:36934..37509Clytia hemisphaericaexon
TCONS_00036063-exon-sc0001409-1510915933:36934..37509TCONS_00036063-exon-sc0001409-1510915933:36934..37509Clytia hemisphaericaexon
TCONS_00036063-exon-sc0001409-1575043694:36934..37509TCONS_00036063-exon-sc0001409-1575043694:36934..37509Clytia hemisphaericaexon
TCONS_00036063-exon-sc0001409-1491911889:37595..37666TCONS_00036063-exon-sc0001409-1491911889:37595..37666Clytia hemisphaericaexon
TCONS_00036063-exon-sc0001409-1510915933:37595..37666TCONS_00036063-exon-sc0001409-1510915933:37595..37666Clytia hemisphaericaexon
TCONS_00036063-exon-sc0001409-1575043694:37595..37666TCONS_00036063-exon-sc0001409-1575043694:37595..37666Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001409supercontigsc0001409:35665..37666 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.0045	4.30608	4.33804	3.38089	5.80897	4.49806	3.25603	5.02832	1.47749	2.95981	2.10531	1.71552	1.88588	2.00336	1.20455	1.31904	1.54371	0.98266	1.72576	2.74494	1.98821	2.17435	1.04239	1.69229	2.34727	3.00751	1.51373	1.3304	5.0213	3.57379
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00036063 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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