TCONS_00036058 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036058
Unique NameTCONS_00036058
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length333

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036058 ID=TCONS_00036058|Name=TCONS_00036058|organism=Clytia hemisphaerica|type=transcript|length=333bp
ATTTGGACAACTTCTCTTCTTGACTCTAACCTTaagattaaagtttttaa
atccACCATAGAACCTATCCTTCTTTATGGTTCGAAAACGTGGTCCTTCA
CACGTAAATTAGAAAAACAACTCGATGGAACATACACACACCTTCTAAGA
AGAGTTAAAAATCTTTCCTGGCGCGATCACCTCACTAAAAACACCATCTA
TGGTTCGATTAAGCCTATCTCAAACATCTTAAAGGCTAGACGTGTTCAGT
TTGCTGGTCATTGCCTTCGTGCATCCACAGAAGTCATCTCCTCTCTCTTA
CTCTGGAAACCCAAGCGGATGGTTCAAAGATCG
Run BLAST on NCBI

protein sequence of TCONS_00036058-protein

>TCONS_00036058-protein ID=TCONS_00036058-protein|Name=TCONS_00036058-protein|organism=Clytia hemisphaerica|type=polypeptide|length=111bp
IWTTSLLDSNLKIKVFKSTIEPILLYGSKTWSFTRKLEKQLDGTYTHLLR
RVKNLSWRDHLTKNTIYGSIKPISNILKARRVQFAGHCLRASTEVISSLL
LWKPKRMVQRS
Run BLAST on NCBI

transcript from alignment at sc0001408:59250..59582

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036058 ID=TCONS_00036058|Name=TCONS_00036058|organism=Clytia hemisphaerica|type=transcript|length=333bp|location=Sequence derived from alignment at sc0001408:59250..59582 (Clytia hemisphaerica)
CGATCTTTGAACCATCCGCTTGGGTTTCCAGAGTAAGAGAGAGGAGATGA
CTTCTGTGGATGCACGAAGGCAATGACCAGCAAACTGAACACGTCTAGCC
TTTAAGATGTTTGAGATAGGCTTAATCGAACCATAGATGGTGTTTTTAGT
GAGGTGATCGCGCCAGGAAAGATTTTTAACTCTTCTTAGAAGGTGTGTGT
ATGTTCCATCGAGTTGTTTTTCTAATTTACGTGTGAAGGACCACGTTTTC
GAACCATAAAGAAGGATAGGTTCTATGGTggatttaaaaactttaatctt
AAGGTTAGAGTCAAGAAGAGAAGTTGTCCAAAT

Coding sequence (CDS) from alignment at sc0001408:59250..59582

>TCONS_00036058 ID=TCONS_00036058|Name=TCONS_00036058|organism=Clytia hemisphaerica|type=CDS|length=333bp|location=Sequence derived from alignment at sc0001408:59250..59582 (Clytia hemisphaerica)
CGATCTTTGAACCATCCGCTTGGGTTTCCAGAGTAAGAGAGAGGAGATGA
CTTCTGTGGATGCACGAAGGCAATGACCAGCAAACTGAACACGTCTAGCC
TTTAAGATGTTTGAGATAGGCTTAATCGAACCATAGATGGTGTTTTTAGT
GAGGTGATCGCGCCAGGAAAGATTTTTAACTCTTCTTAGAAGGTGTGTGT
ATGTTCCATCGAGTTGTTTTTCTAATTTACGTGTGAAGGACCACGTTTTC
GAACCATAAAGAAGGATAGGTTCTATGGTggatttaaaaactttaatctt
AAGGTTAGAGTCAAGAAGAGAAGTTGTCCAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021194XLOC_021194Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036058-exon-sc0001408-1491911889:59250..59582TCONS_00036058-exon-sc0001408-1491911889:59250..59582Clytia hemisphaericaexon
TCONS_00036058-exon-sc0001408-1510915933:59250..59582TCONS_00036058-exon-sc0001408-1510915933:59250..59582Clytia hemisphaericaexon
TCONS_00036058-exon-sc0001408-1575043694:59250..59582TCONS_00036058-exon-sc0001408-1575043694:59250..59582Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036058-proteinTCONS_00036058-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001408supercontigsc0001408:59250..59582 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.00274	0.928017	3.06326	2.53542	0	0.914661	0.735666	0.688722	0.48219	0.298635	0.869588	0.571633	0.570838	0.197607	0.192111	0.523033	0.214778	0.752757	0.304136	0	0.553245	1.01914	0.328042	0.298238	0.307178	0	0.784614	0.837361	0.952663	1.94123
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00036058 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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