TCONS_00036056 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036056
Unique NameTCONS_00036056
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length316

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036056 ID=TCONS_00036056|Name=TCONS_00036056|organism=Clytia hemisphaerica|type=transcript|length=316bp
CTTTTCCAAAATCGATCAGCTTCACACAGGTGTTTATAAATACAAAATTA
TCAGCTTTTAAATCATTATGAAGTATCTTGAAAGAGTGAAGTACCATGAC
AGAATTCAAAACATCAATGAATATGGGCTTCAGTTGGGAAAAATTTGTCA
ATTGTTTCACTTTACGGTATAAAGTAGGGGAAGCTTCCAATGTTTCTTGA
TTACCAAGGAATTCCATCAAAATAGAAAAGGGCTGTAAAATTCCAAAGAT
GTATGGGAAATATTTTTCACCAGAAATGGTCATTCCTACAACAGCCTCAC
TTAAAACATCATATTT
Run BLAST on NCBI

protein sequence of TCONS_00036056-protein

>TCONS_00036056-protein ID=TCONS_00036056-protein|Name=TCONS_00036056-protein|organism=Clytia hemisphaerica|type=polypeptide|length=105bp
KYDVLSEAVVGMTISGEKYFPYIFGILQPFSILMEFLGNQETLEASPTLY
RKVKQLTNFSQLKPIFIDVLNSVMVLHSFKILHNDLKADNFVFINTCVKL
IDFGK
Run BLAST on NCBI

transcript from alignment at sc0001408:28492..28807

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036056 ID=TCONS_00036056|Name=TCONS_00036056|organism=Clytia hemisphaerica|type=transcript|length=316bp|location=Sequence derived from alignment at sc0001408:28492..28807 (Clytia hemisphaerica)
AAATATGATGTTTTAAGTGAGGCTGTTGTAGGAATGACCATTTCTGGTGA
AAAATATTTCCCATACATCTTTGGAATTTTACAGCCCTTTTCTATTTTGA
TGGAATTCCTTGGTAATCAAGAAACATTGGAAGCTTCCCCTACTTTATAC
CGTAAAGTGAAACAATTGACAAATTTTTCCCAACTGAAGCCCATATTCAT
TGATGTTTTGAATTCTGTCATGGTACTTCACTCTTTCAAGATACTTCATA
ATGATTTAAAAGCTGATAATTTTGTATTTATAAACACCTGTGTGAAGCTG
ATCGATTTTGGAAAAG

Coding sequence (CDS) from alignment at sc0001408:28492..28807

>TCONS_00036056 ID=TCONS_00036056|Name=TCONS_00036056|organism=Clytia hemisphaerica|type=CDS|length=315bp|location=Sequence derived from alignment at sc0001408:28492..28807 (Clytia hemisphaerica)
AAATATGATGTTTTAAGTGAGGCTGTTGTAGGAATGACCATTTCTGGTGA
AAAATATTTCCCATACATCTTTGGAATTTTACAGCCCTTTTCTATTTTGA
TGGAATTCCTTGGTAATCAAGAAACATTGGAAGCTTCCCCTACTTTATAC
CGTAAAGTGAAACAATTGACAAATTTTTCCCAACTGAAGCCCATATTCAT
TGATGTTTTGAATTCTGTCATGGTACTTCACTCTTTCAAGATACTTCATA
ATGATTTAAAAGCTGATAATTTTGTATTTATAAACACCTGTGTGAAGCTG
ATCGATTTTGGAAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021192XLOC_021192Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036056-exon-sc0001408-1491911889:28492..28807TCONS_00036056-exon-sc0001408-1491911889:28492..28807Clytia hemisphaericaexon
TCONS_00036056-exon-sc0001408-1510915933:28492..28807TCONS_00036056-exon-sc0001408-1510915933:28492..28807Clytia hemisphaericaexon
TCONS_00036056-exon-sc0001408-1575043694:28492..28807TCONS_00036056-exon-sc0001408-1575043694:28492..28807Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036056-proteinTCONS_00036056-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001408supercontigsc0001408:28492..28807 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.326	1.29306	1.50136	0.367213	8.94092	6.00545	1.70478	5.18698	1.67609	2.42213	0	1.10388	0.88188	0	0.188236	0.808026	0.497711	1.02028	0	0	0.641025	0.469005	0.760182	1.38223	0.355917	1.58824	1.36366	0.48511	0.367939	0.374871
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000719Prot_kinase_dom
IPR008271Ser/Thr_kinase_AS
IPR011009Kinase-like_dom
Vocabulary: Molecular Function
TermDefinition
GO:0004672protein kinase activity
GO:0005524ATP binding
Vocabulary: Biological Process
TermDefinition
GO:0006468protein phosphorylation
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006468 protein phosphorylation
molecular_function GO:0005524 ATP binding
molecular_function GO:0004672 protein kinase activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00036056 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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