TCONS_00036044 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036044
Unique NameTCONS_00036044
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length674

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036044 ID=TCONS_00036044|Name=TCONS_00036044|organism=Clytia hemisphaerica|type=transcript|length=674bp
cgtcatatttgtccgaaaatcacaccaaagtgtccgaaaaaaaattggaa
acatagtaatttcgattcccctaccccttggctttccaaaaatgtataac
aagtgcttctaacaaaacagtcgagcgattttacaaaatgccctctacta
aaaCCCCTCCGAAATAGAAATATTTCAACTACATTTAACAAATAGCCACA
AATGCAACATTCACGCCCGAActtaaaattgctaaaaaaagccACAGCaa
cagaaatgaaaaatataattcaggGGGCGTTTACTTTTGAAGTCCCCTGA
TAATATACTCTTCGTCGATCTTTTGCACTTGATAGTTAAAAAGACTGAGA
AAGAGGAACCGAAAAAGATGAAGATTTATGATGtagtcaaaaatgaaaaa
tgaagacaaaTGATTTCTTCGTTTGTTCGACTTGCATTACCATTCCTTAA
ATGGTcatgaagttttttgaaatgaGGGTATTTCTTTAACAGGCTGTCGA
TAGTCAACGCATATTCCTTTCCCCTCTTCGTTCCAACAATTGTTAGTAAA
ATATTATCTGTTTTATCAATCGATTCCTTCACCCATTGATCCAGGGCACC
ACTGATGTACAGCTTTTTTAGGTGATTTTCCACAACTTGCCAATTCTCGG
AACGTTTGTGTTTTTCACtttctg
Run BLAST on NCBI

transcript from alignment at sc0001406:58258..58931

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036044 ID=TCONS_00036044|Name=TCONS_00036044|organism=Clytia hemisphaerica|type=transcript|length=674bp|location=Sequence derived from alignment at sc0001406:58258..58931 (Clytia hemisphaerica)
cagaaaGTGAAAAACACAAACGTTCCGAGAATTGGCAAGTTGTGGAAAAT
CACCTAAAAAAGCTGTACATCAGTGGTGCCCTGGATCAATGGGTGAAGGA
ATCGATTGATAAAACAGATAATATTTTACTAACAATTGTTGGAACGAAGA
GGGGAAAGGAATATGCGTTGACTATCGACAGCCTGTTAAAGAAATACCCt
catttcaaaaaacttcatgACCATTTAAGGAATGGTAATGCAAGTCGAAC
AAACGAAGAAATCAtttgtcttcatttttcatttttgactaCATCATAAA
TCTTCATCTTTTTCGGTTCCTCTTTCTCAGTCTTTTTAACTATCAAGTGC
AAAAGATCGACGAAGAGTATATTATCAGGGGACTTCAAAAGTAAACGCCC
cctgaattatatttttcatttctgttGCTGTggctttttttagcaatttt
aagTTCGGGCGTGAATGTTGCATTTGTGGCTATTTGTTAAATGTAGTTGA
AATATTTCTATTTCGGAGGGGttttagtagagggcattttgtaaaatcgc
tcgactgttttgttagaagcacttgttatacatttttggaaagccaaggg
gtaggggaatcgaaattactatgtttccaattttttttcggacactttgg
tgtgattttcggacaaatatgacg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021187XLOC_021187Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036044-exon-sc0001406-1491911889:58258..58931TCONS_00036044-exon-sc0001406-1491911889:58258..58931Clytia hemisphaericaexon
TCONS_00036044-exon-sc0001406-1510915933:58258..58931TCONS_00036044-exon-sc0001406-1510915933:58258..58931Clytia hemisphaericaexon
TCONS_00036044-exon-sc0001406-1575043694:58258..58931TCONS_00036044-exon-sc0001406-1575043694:58258..58931Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001406supercontigsc0001406:58258..58931 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.126121	0.34862	0	0.122036	0	0	0.362665	0	0.735427	0.477328	0.882989	0.767163	0.405805	0.329687	0.768752	0.433762	0.0886933	0.412558	0.32629	0.601663	0.652914	1.40918	0.545778	0.68082	0	0	0.876673	0	1.99744	1.58007
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00036044 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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