TCONS_00036043 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036043
Unique NameTCONS_00036043
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1410

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036043 ID=TCONS_00036043|Name=TCONS_00036043|organism=Clytia hemisphaerica|type=transcript|length=1410bp
CCGTCGTTCAAACCGTCAATCCTTTGGACGTAGCCAATCCCCATCTCGTG
CAGATCGTTCAAAGACTGCCAAGTGCCCAGATTGTGGTAATACTTTCAAC
GTTTACACCAAAAAGTCGAGAGGGTGGAACCGAAATCCCCACAAGAAATG
TGAGTCGTGCTGGAAGAAATCAAGAGCCAGTGATCGTGCTGAGACCGGTG
CTATAGCCTCCGACAGTGATCCAGTTGGTCAAATATCAACCGTTCGATCA
NTCCCTTTCTGTGCACACCTGAGAACAATAGCAAAATGAAAGCTTGGCTC
TTAGATCGTTACAAGAGCTCAACTTTCAACAGGTGCCCGCATCAGCTTCT
TCCTTCAATGACAGGACCGCCAGTCAAGACTGCAACAAAAACGCTCCGTC
TAACCCGCCACTTCCAGCAATTCTCTCTAACCCACCATCAACTCTGTTCG
AGATGATTCATGCCGATTACTTTGACTCTGCAGCCCAACACTACCTGGTC
GTCGGTGATAGACTGTCAGGATGGTCAGACGTATTCAAAGCTCCGCACGG
CTCTCCTCAATCTGGAGCAGAGGGCCTCATCGCATGCTTACGTAACTATT
TTTCCCGATTTGGCGTGCCAACTGAAATCTCGAGTGACGGTGGTCCTGAA
TTCATATCCAATGCTACGGAGACCTTTTTGAAGAAATGGGGCGTCAACCA
TCGCATCTCCTCGGCCTACAATCCCCAGTCGAACGGACGCGCTGAGGTTG
CTGTAAAATCTGCTAAACGTCTGCTACGATCAAATACTGGACCCGGTGGT
AGCCTTGATACTGATCGCTTCCTCCGCGCCATGATGCAACTTCGTAACAC
CCCTGATCGTGATTGTGAGTTATCTCCAGCCCAAATCGTATTCGGAAGAC
CTATCAGAGATGCATTTGCCTTTGCCAGTCGCCTGGACAAGTTTACCAAC
CCTAATATCCGACCCTTGTGGCGAGACGCATGGGCCAAGAAAGAAGAGGC
ACTTCGGGAACGCTTCCACCACTCCGCAGAGAAGAGGAACGAGCATGCAC
ACGCACTACCGAATTTGACTCCTGGACACCGCTGCTATATTCAAAACCAA
AGCGGTAACCATCCAAAACGTTGGGATCGATCGGGAACTGTTGTTGAGAC
ACATGGCAATGACAGTTACTCTTTGAAGGTAGATGGTACCGGAAGAGTGA
CACGCCGTAACAGACGCCGTCTACGGCAATTTCTTCCAGCATCTGCAGAC
ATCACCAGTAAGAACTTCGTCCACTTGCAACCTTCGCAGCAACCTCGTCC
AACAGCTCCGCCACTCGTCAATCAATCAGCTCCTACGCAGACAACCTCCC
GTACAGTCACCATGGTGGTACCTCCTTCTCTACCAGACGCGTCAAGCTCG
GACCCTTGTG
Run BLAST on NCBI

protein sequence of TCONS_00036043-protein

>TCONS_00036043-protein ID=TCONS_00036043-protein|Name=TCONS_00036043-protein|organism=Clytia hemisphaerica|type=polypeptide|length=319bp
MIHADYFDSAAQHYLVVGDRLSGWSDVFKAPHGSPQSGAEGLIACLRNYF
SRFGVPTEISSDGGPEFISNATETFLKKWGVNHRISSAYNPQSNGRAEVA
VKSAKRLLRSNTGPGGSLDTDRFLRAMMQLRNTPDRDCELSPAQIVFGRP
IRDAFAFASRLDKFTNPNIRPLWRDAWAKKEEALRERFHHSAEKRNEHAH
ALPNLTPGHRCYIQNQSGNHPKRWDRSGTVVETHGNDSYSLKVDGTGRVT
RRNRRRLRQFLPASADITSKNFVHLQPSQQPRPTAPPLVNQSAPTQTTSR
TVTMVVPPSLPDASSSDPC
Run BLAST on NCBI

transcript from alignment at sc0001406:60808..62323-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036043 ID=TCONS_00036043|Name=TCONS_00036043|organism=Clytia hemisphaerica|type=transcript|length=1516bp|location=Sequence derived from alignment at sc0001406:60808..62323- (Clytia hemisphaerica)
CCGTCGTTCAAACCGTCAATCCTTTGGACGTAGCCAATCCCCATCTCGTG
CAGATCGTTCAAAGACTGCCAAGTGCCCAGATTGTGGTAATACTTTCAAC
GTTTACACCAAAAAGTCGAGAGGGTGGAACCGAAATCCCCACAAGAAATG
TGAGTCGTGCTGGAAGAAATCAAGAGCCAGTGATCGTGCTGAGACCGGTG
CTATAGCCTCCGACAGTGATCCAGTTGGTCAAATATCAACCGTTCGATCA
NTCCCTTTCTGTGCACACCTGAGAACAATAGCAAAATGAAAGCTTGGCTC
TTAGATCGTTACAAGAGCTCAACTTTCAACAGGTGCCCGCATCAGCTTCT
TCCTTCAATGACAGGACCGCCAGTCAAGACTGCAACAAAAACGCTCCGTC
TAACCCGCCACTTCCAGCAATTCTCTCTAACCCACCATCAACTCTGTTCG
AGATGATTCATGCCGATTACTTTGACTCTGCAGCCCAACATTACCTGGTC
GTCGGTGATAGACTGTCAGGATGGTCAGACGTATTCAAAGCTCCGCACGG
CTCTCCTCAATCTGGATCAGAGGGCCTCATCGCATNCAGCCCAACACTAC
CTGGTCGTCGGTGATAGACTGTCAGGATGGTCAGACGTATTCAAAGCTCC
GCACGGCTCTCCTCAATCTGGAGCAGAGGGCCTCATCGCATGCTTACGTA
ACTATTTTTCCCGATTTGGCGTGCCAACTGAAATCTCGAGTGACGGTGGT
CCTGAATTCATATCCAATGCTACGGAGACCTTTTTGAAGAAATGGGGCGT
CAACCATCGCATCTCCTCGGCCTACAATCCCCAGTCGAACGGACGCGCTG
AGGTTGCTGTAAAATCTGCTAAACGTCTGCTACGATCAAATACTGGACCC
GGTGGTAGCCTTGATACTGATCGCTTCCTCCGCGCCATGATGCAACTTCG
TAACACCCCTGATCGTGATTGTGAGTTATCTCCAGCCCAAATCGTATTCG
GAAGACCTATCAGAGATGCATTTGCCTTTGCCAGTCGCCTGGACAAGTTT
ACCAACCCTAATATCCGACCCTTGTGGCGAGACGCATGGGCCAAGAAAGA
AGAGGCACTTCGGGAACGCTTCCACCACTCCGCAGAGAAGAGGAACGAGC
ATGCACACGCACTACCGAATTTGACTCCTGGACACCGCTGCTATATTCAA
AACCAAAGCGGTAACCATCCAAAACGTTGGGATCGATCGGGAACTGTTGT
TGAGACACATGGCAATGACAGTTACTCTTTGAAGGTAGATGGTACCGGAA
GAGTGACACGCCGTAACAGACGCCGTCTACGGCAATTTCTTCCAGCATCT
GCAGACATCACCAGTAAGAACTTCGTCCACTTGCAACCTTCGCAGCAACC
TCGTCCAACAGCTCCGCCACTCGTCAATCAATCAGCTCCTACGCAGACAA
CCTCCCGTACAGTCACCATGGTGGTACCTCCTTCTCTACCAGACGCGTCA
AGCTCGGACCCTTGTG

Coding sequence (CDS) from alignment at sc0001406:60808..62323-

>TCONS_00036043 ID=TCONS_00036043|Name=TCONS_00036043|organism=Clytia hemisphaerica|type=CDS|length=1914bp|location=Sequence derived from alignment at sc0001406:60808..62323- (Clytia hemisphaerica)
ACTACCTGGTCGTCGGTGATAGACTGTCAGGATGGTCAGACGTATTCAAA
GCTCCGCACGGCTCTCCTCAATCTGGAGCAGAGGGCCTCATCGCATGCTT
ACGTAACTATTTTTCCCGATTTGGCGTGCCAACTGAAATCTCGAGTGACG
GTGGTCCTGAATTCATATCCAATGCTACGGAGACCTTTTTGAAGAAATGG
GGCGTCAACCATCGCATCTCCTCGGCCTACAATCCCCAGTCGAACGGACG
CGCTGAGGTTGCTGTAAAATCTGCTAAACGTCTGCTACGATCAAATACTG
GACCCGGTGGTAGCCTTGATACTGATCGCTTCCTCCGCGCCATGATGCAA
CTTCGTAACACCCCTGATCGTGATTGTGAGTTATCTCCAGCCCAAATCGT
ATTCGGAAGACCTATCAGAGATGCATTTGCCTTTGCCAGTCGCCTGGACA
AGTTTACCAACCCTAATATCCGACCCTTGTGGCGAGACGCATGGGCCAAG
AAAGAAGAGGCACTTCGGGAACGCTTCCACCACTCCGCAGAGAAGAGGAA
CGAGCATGCACACGCACTACCGAATTTGACTCCTGGACACCGCTGCTATA
TTCAAAACCAAAGCGGTAACCATCCAAAACGTTGGGATCGATCGGGAACT
GTTGTTGAGACACATGGCAATGACAGTTACTCTTTGAAGGTAGATGGTAC
CGGAAGAGTGACACGCCGTAACAGACGCCGTCTACGGCAATTTCTTCCAG
CATCTGCAGACATCACCAGTAAGAACTTCGTCCACTTGCAACCTTCGCAG
CAACCTCGTCCAACAGCTCCGCCACTCGTCAATCAATCAGCTCCTACGCA
GACAACCTCCCGTACAGTCACCATGGTGGTACCTCCTTCTCTACCAGACG
CGTCAAGCTCGGACCCTTGTATGATTCATGCCGATTACTTTGACTCTGCA
GCCCAACACTACCTGGTCGTCGGTGATAGACTGTCAGGATGGTCAGACGT
ATTCAAAGCTCCGCACGGCTCTCCTCAATCTGGAGCAGAGGGCCTCATCG
CATGCTTACGTAACTATTTTTCCCGATTTGGCGTGCCAACTGAAATCTCG
AGTGACGGTGGTCCTGAATTCATATCCAATGCTACGGAGACCTTTTTGAA
GAAATGGGGCGTCAACCATCGCATCTCCTCGGCCTACAATCCCCAGTCGA
ACGGACGCGCTGAGGTTGCTGTAAAATCTGCTAAACGTCTGCTACGATCA
AATACTGGACCCGGTGGTAGCCTTGATACTGATCGCTTCCTCCGCGCCAT
GATGCAACTTCGTAACACCCCTGATCGTGATTGTGAGTTATCTCCAGCCC
AAATCGTATTCGGAAGACCTATCAGAGATGCATTTGCCTTTGCCAGTCGC
CTGGACAAGTTTACCAACCCTAATATCCGACCCTTGTGGCGAGACGCATG
GGCCAAGAAAGAAGAGGCACTTCGGGAACGCTTCCACCACTCCGCAGAGA
AGAGGAACGAGCATGCACACGCACTACCGAATTTGACTCCTGGACACCGC
TGCTATATTCAAAACCAAAGCGGTAACCATCCAAAACGTTGGGATCGATC
GGGAACTGTTGTTGAGACACATGGCAATGACAGTTACTCTTTGAAGGTAG
ATGGTACCGGAAGAGTGACACGCCGTAACAGACGCCGTCTACGGCAATTT
CTTCCAGCATCTGCAGACATCACCAGTAAGAACTTCGTCCACTTGCAACC
TTCGCAGCAACCTCGTCCAACAGCTCCGCCACTCGTCAATCAATCAGCTC
CTACGCAGACAACCTCCCGTACAGTCACCATGGTGGTACCTCCTTCTCTA
CCAGACGCGTCAAGCTCGGACCCTTGTATGATTCATGCCGATTACTTTGA
CTCTGCAGCCCAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021186XLOC_021186Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036043-proteinTCONS_00036043-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036043-exon-sc0001406-1575043694:61835..62323TCONS_00036043-exon-sc0001406-1575043694:61835..62323Clytia hemisphaericaexon
TCONS_00036043-exon-sc0001406-1575043694:60808..61728TCONS_00036043-exon-sc0001406-1575043694:60808..61728Clytia hemisphaericaexon
TCONS_00036043-exon-sc0001406-1510915933:61835..62323TCONS_00036043-exon-sc0001406-1510915933:61835..62323Clytia hemisphaericaexon
TCONS_00036043-exon-sc0001406-1510915933:60808..61728TCONS_00036043-exon-sc0001406-1510915933:60808..61728Clytia hemisphaericaexon
TCONS_00036043-exon-sc0001406-1491911889:61835..62323TCONS_00036043-exon-sc0001406-1491911889:61835..62323Clytia hemisphaericaexon
TCONS_00036043-exon-sc0001406-1491911889:60808..61728TCONS_00036043-exon-sc0001406-1491911889:60808..61728Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001406supercontigsc0001406:60808..62323 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.146927	0	3.38061e-08	0.0925178	0	0	0.24629	0.195549	0.161193	0.146986	0	0.0744867	0	0.226896	0.161489	0.113108	0.375777	0.241692	0	0.0898226	0.432313	0.411973	0.198478	0.126458	0.291134	0.356064	0.176708	0	0.0494531	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR012337RNaseH-like_dom
IPR001584Integrase_cat-core
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
Vocabulary: Biological Process
TermDefinition
GO:0015074DNA integration
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
molecular_function GO:0003676 nucleic acid binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00036043 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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