TCONS_00036040 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036040
Unique NameTCONS_00036040
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2067

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036040 ID=TCONS_00036040|Name=TCONS_00036040|organism=Clytia hemisphaerica|type=transcript|length=2067bp
AGATAGAAGCGCCCAAGTCACATATTATAAAAAACAATTAGAACTTCTCG
AACAAGAAGAACAGCGTGTTTTGAGCGAGATCAATAATGAGGAGAACCTC
TTGCTGCAACAGATAGAGCAAAAGAAACGTGAGATCGACCTTCTGAAAGC
TCGCAGGCTCCAATCCCAATCGATCCAATCAACGAACTCTTCTGTCTCCG
CCTCCCGTCATCAACCCGCCCCCACCCCAACGTCTCAAGCTACAACAAAC
GCCGCCATCTTACCTTCGCTGTTCGATGACGATCGCCCTGTACGCCCACA
AGTTTTGCAAAGTGgatctttattagaaaactctaGAGGTCATCTTTCTG
ACCCCCTTGCCTTGGCTGTAAATAATGTTCGTGGTGGAAATGGTAATGTT
GGTGGAATTGATAGCACTGAAATCTTTCTTCGACCATCTCGTCTGTCCAA
CGATGGGACTCGTGGTCGAGCACTGTCCTCCTCTCTCTTGGCAGACGTCC
TATTCTACAGACAGGCCACCTATGCTCCCAACACTGTGAAGGCCTACCGT
ACTCACCGCAATACATACTTCCGTTTTTGCAGCCTACTGGGCATTGAGCC
AGCACCTATTTCTACTGTTCACCTCTGTATGTATGCTGCATACCTAGCTA
GATTTCTTTTGCCGCAATCTGTTTGTATATATATTaattttgtgggtatt
tttcACAGGGACCAGGGCCTCCCTAACCCACTGACGGATAACTGGACCCT
CTCCACTGTCCTGAAGGGTATCAAGCGCACCTTAGGCTCCCCTCCTCTCC
CAAGGCTCCCTATGACCACAGACATCCTGCTTCGTATCCGTGGTCTCCTC
AATCTCATGGATAGTAAGCATGCGTCGTTTTGGGCAGTCTGCTTGGTCtc
tttttttgggtttttcCGTGAGAGCCATCTCCTGCCTTCTTCTGTGTCAG
AGTTCTCCCCCTTGACCTACCTCACTCGTTCAGACTTTAGCTTTTCTGGG
TCTTCAATTCTGATCAGGGTCAGGTGGAGTAAGACGATCCAGTTTGGTCA
ACGTATGTTACCATTCCACTGGTTGCAAGCTCTTCTCCCCTGTGTCCAGT
TTGGGCCGTGTCCCGTGCGTTCTCTCTCACTCCTCATACTCGTCCCAATG
ACCAGGCCTTTTGCTGGAGGGATTCTTCTCGTGTCACTTACCGGATCTTC
ACGTATAAGGAGTTCATGCATTCACTGCAGTTCTTCCTCACTCGTTTAGG
TCTCAATTCCGCTCAGTATGGTTCCCATTCCTTCAGAAGGGGTGGTGCTT
CCCTTGCCCTTGAAGCTGGCGTCCCGCTGGACACTATAGCTGTCATGGGT
GACTGGAAGTCTGACGCTATTTACCTTTACCTGCACATGCCTTTGTCCCA
GCGCTTGCGTGCCCAACATTCCATCACTTCCTTTCTTGAGTGCTAGTCCT
AGTCTTTCACTGTGCCCCACCTATATATAGCTTTTcctaatatatatatt
tttttttcccaCTACATTCTCACATTGGGTTTGGACCTATctctttttgt
atatttttgtccTAGCCCATGCTAGTCTATTCAGAAGAACTGTGATTGTA
CCAATGACAGGTACCCTGTGTCCTTTTCTTACTCTATGTGTTTAATGGCC
TGATATATGTGGTATATCAGGTTTTAGATTCATAGTGTTATGTTTTTATC
TGTACTCTTCATTCAGCCTCTGTTTTATGTAGCCTCACTCTCATGAGTAT
TTAAAGAGCACATGGTACCTGAACAGCCTCTTTCTTCAGTTCTTCACTGT
GCATGCTGACCTGTATTTTTGCTCCTCCTCCCTCCCCGACATCTCATGGT
GTTCTAATaggtttattattattatttttattatttttactgTGTATTCG
CTGAAGGTTATGTACCTATATTTGCTTTATACCTCTattgtcattttcat
tttacattttctttaGCACATTTTTATTTAATGCTGTTTGCTATTACTCC
CCGtgtagtttttgttttcatattgCTATATACTATACTCTATGTTTTCA
GTTTGTCAGTTGGCCAT
Run BLAST on NCBI

transcript from alignment at sc0001406:16381..20750-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036040 ID=TCONS_00036040|Name=TCONS_00036040|organism=Clytia hemisphaerica|type=transcript|length=4370bp|location=Sequence derived from alignment at sc0001406:16381..20750- (Clytia hemisphaerica)
AGATAGAAGCGCCCAAGTCACATATTATAAAAAACAATTAGAACTTCTCG
AACAAGAAGAACAGCGTGTTTTGAGCGAGATCAATAATGAGGAGAACCTC
TTGCTGCAACAGATAGAGCAAAAGAAACGTGAGATCGACCTTCTGAAAGC
TCGCAGGCTCCAATCCCAATCGATCCAATCAACGAACTCTTCTGTCTCCG
CCTCCCGTCATCAACCCGCCCCCACCCCAACGTCTCAAGCTACAACAAAC
GCCGCCATCTTACCTTCGCTGTTCGATGACGATCGCCCTGTACGCCCACA
AGTTTTGCAAAGTGGATCTTTATTAGAAAACTCTAGAGGTCATCTTTCTG
ACCCCCTTGCCTTGGCTGTAAATAATGTTCGTGGTGGAAATGGTAATGTT
GGTGGAATTGATAGCACTGAAATCTTTCTTCGACCATCTCGTCTGTCCAA
CGATGGGACTCGTGGTAAGCCATTACGAATAGTTGACTTTGTTTCAAGGG
CTCGTCCCACGGAAGAGGAAAAGGTCCTCTCCTATGATAGAAACTGTAAA
CTCTCATTCATCTTAAATGATTCAAAACCGAAGCTCAAAAACATTACTGT
TGAACAATTTAGCATAGCAAATCTTCGAATTTTTTATGAACTATTATTTT
CTAAAAAACTGAGCACCATGCAAGAAGTCCGGGAGTATCTCTCGTACTCT
GTTAAGATCTTAGAATTGGCGACTAAGTATTCCTGGGAGTCTGTGCTGCT
GTACGATGATGAATATCGCATATTACAGCACACATATGGCTTTTCCTGGG
CCACTGATAACAGTCACCTACATGAGGTAATGCTTTTACCAAAATGGGCA
AGCGCGCTTAAGGGACAAGACAAGTTCTCCGGCTCTTCCTTACCTTTTCT
TGGGTCAGGTAAGACTGGGGGCTCTCGGACTACTACTGTCTCACATCTTC
CCAGTGGTGAAGAGATCTGTAGGATGTTCAACTCTCGTAAGGGATGTCAA
CGTCCCCAATGCAAGTTTTCCCACGCTTGCAACCGTAAAGTTGGTTCGCA
AGCCTGTGGGAACAGACAACATGCTGGATGTAATCACCCGTCACGTGGTG
ATAACTCCAAAGATGGGGATGAATGACAACCCTCACCTCCTCTTTCAAAC
CTATCTTCGTTTGTTTGGGAGAGGGAGCTTGAAGGGGATCCTGACAAGGA
TTTCATTCTTGACGGGGTCACCAACGGTTTTAAGCTCCTGCCCCTTGATG
CTCCCATCTCGATTGCCGAGGTGGACAACTACACATCTGCTGTCAGCCCA
GGTGCCAAAGAGAAGGTTGAAGCCACCATTCTCGAGGAACTAGCGGCTGG
AAATTATCGCATTGCTAATTGCAAACCTACCATTGTCAGTGCACTTGGAG
CCGTTCCAAAGCCAGACTCTGAGGATTTGCGCATAATCCACGATTGCTCC
ATGCCTCCGGGGCGTGGGGTAAACTCTTTCATTGACATTGAAAAACAAAA
GTTCCAGACCCTAGATGATGCTACTAAACTGATAGGGAAGGACTTTTACA
TTGCTAAGGTGGACCTTCGCAGGGCCTATCGCTCTGTTCCCGTCCACCCT
GGAAACTACTCAGCACTAGGTTTGAAGTGGCGGTTCAAGGATGACCGACA
TTCCACCTACCTAATAGACACACGTCTTCCGTTTGGAGCTCGCAGTGCTC
CTGGTATTTTTCATCGTATCACACAGTCTGTTAAGCGCATGATGGCCAAG
AAAGGATTCTCTAAACTGGTTGTTTACTTGGATGACTTTCTTGTAGTTGG
CCGTACATTCAAAGAATGTCAGCGAGCATTTGACACCCTCTGTGCCCTCT
TACTTGAACTGGGTTTCATGATAAGCCCAAGCAAGTTGGTCCAACCCTGC
CAGAAACTTACCTTTTTAGGTGTGGACATTGACACACAGTCCTTGTCCCT
TTCTTTGTCTCAAAGGAAGCTCAGGGATCTCAAGGACCTGCTATTCTCTT
TTCAAACTAGAGTGCGAGCGTCCAAGAGACAGCTTCAACAATTAGCGGGT
CGCCTTAACTGGGCCTGCAAGGTGGTTCATGGCGGTAGAACCTTTCTTCG
GAGGATCCTTGATCTCATGTCCCCCCTTGCCTCCCAGTCTGCTAAGTGCT
TGCTCTCAGAGGAGTTTTTCAAAGACCTAGATTGGTGGGTTAGTTTTTTG
GAAGTTTTCAATGGGTTTTGTTCATTCCATGACTCACGCCCTGTTACTAA
CCTCCACACAGATGCATGCACCTGGGGAATCGGTGCATCCTTTGGAGAGG
ATTGGTTCTATTCTAATCTTCTGGTGGATGCTCCTGAACTGTCAGGTCTT
CATATCACGTACAAGGAAGCTTTATGTGTAGTTTTTTCTGCGGAGCGTTG
GGCGGAATCATTCAAGAATAAGGTAGTCCACGTTTACTGTGACAACCAAG
CGGCTGTTGCTATGCTAAACAAGGGTACCACAAAAAATCCGGTTATGATG
ACTTACCTGAGACGTCTCTTTTGGTGTTCTGCCATGTACAATTTCCGTCT
TCGGGCATTTCATATTCCGGGAAAATTGAATGTTCTGGCAGATCATATCT
CTCGTCTTCACTTCCGTCCTAACATGCAAGCTTTTTGTCACCATCTGCTT
GCCTCCGGGGGGATGCCAGCCCTTGTAGCCCCTGCCACGCTACACATGTC
TCCCTTGTCATACTTCTTTCTGCTGGGTCTTTACTCCTCTAGCCTCTGTT
TTTCTTCTGCCTTTTAGGTCGAGCACTGTCCTCCTCTCTCTTGGCAGACG
TCCTATTCTACAGACAGGCCACCTATGCTCCCAACACTGTGAAGGCCTAC
CGTACTCACCGCAATACATACTTCCGTTTTTGCAGCCTACTGGGCATTGA
GCCAGCACCTATTTCTACTGTTCACCTCTGTATGTATGCTGCATACCTAG
CTAGATTTCTTTTGCCGCAATCTGTTTGTATATATATTAATTTTGTGGGT
ATTTTTCACAGGGACCAGGGCCTCCCTAACCCACTGACGGATAACTGGAC
CCTCTCCACTGTCCTGAAGGGTATCAAGCGCACCTTAGGCTCCCCTCCTC
TCCCAAGGCTCCCTATGACCACAGACATCCTGCTTCGTATCCGTGGTCTC
CTCAATCTCATGGATAGTAAGCATGCGTCGTTTTGGGCAGTCTGCTTGGT
CTCTTTTTTTGGGTTTTTCCGTGAGAGCCATCTCCTGCCTTCTTCTGTGT
CAGAGTTCTCCCCCTTGACCTACCTCACTCGTTCAGACTTTAGCTTTTCT
GGGTCTTCAATTCTGATCAGGGTCAGGTGGAGTAAGACGATCCAGTTTGG
TCAACGTATGTTACCATTCCACTGGTTGCAAGCTCTTCTCCCCTGTGTCC
AGTTTGGGCCGTGTCCCGTGCGTTCTCTCTCACTCCTCATACTCGTCCCA
ATGACCAGGCCTTTTGCTGGAGGGATTCTTCTCGTGTCACTTACCGGATC
TTCACGTATAAGGAGTTCATGCATTCACTGCAGTTCTTCCTCACTCGTTT
AGGTCTCAATTCCGCTCAGTATGGTTCCCATTCCTTCAGAAGGGGTGGTG
CTTCCCTTGCCCTTGAAGCTGGCGTCCCGCTGGACACTATAGCTGTCATG
GGTGACTGGAAGTCTGACGCTATTTACCTTTACCTGCACATGCCTTTGTC
CCAGCGCTTGCGTGCCCAACATTCCATCACTTCCTTTCTTGAGTGCTAGT
CCTAGTCTTTCACTGTGCCCCACCTATATATAGCTTTTCCTAATATATAT
ATTTTTTTTTCCCACTACATTCTCACATTGGGTTTGGACCTATCTCTTTT
TGTATATTTTTGTCCTAGCCCATGCTAGTCTATTCAGAAGAACTGTGATT
GTACCAATGACAGGTACCCTGTGTCCTTTTCTTACTCTATGTGTTTAATG
GCCTGATATATGTGGTATATCAGGTTTTAGATTCATAGTGTTATGTTTTT
ATCTGTACTCTTCATTCAGCCTCTGTTTTATGTAGCCTCACTCTCATGAG
TATTTAAAGAGCACATGGTACCTGAACAGCCTCTTTCTTCAGTTCTTCAC
TGTGCATGCTGACCTGTATTTTTGCTCCTCCTCCCTCCCCGACATCTCAT
GGTGTTCTAATAGGTTTATTATTATTATTTTTATTATTTTTACTGTGTAT
TCGCTGAAGGTTATGTACCTATATTTGCTTTATACCTCTATTGTCATTTT
CATTTTACATTTTCTTTAGCACATTTTTATTTAATGCTGTTTGCTATTAC
TCCCCGTGTAGTTTTTGTTTTCATATTGCTATATACTATACTCTATGTTT
TCAGTTTGTCAGTTGGCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021183XLOC_021183Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036040-exon-sc0001406-1575043694:20287..20750TCONS_00036040-exon-sc0001406-1575043694:20287..20750Clytia hemisphaericaexon
TCONS_00036040-exon-sc0001406-1575043694:16381..17983TCONS_00036040-exon-sc0001406-1575043694:16381..17983Clytia hemisphaericaexon
TCONS_00036040-exon-sc0001406-1510915933:20287..20750TCONS_00036040-exon-sc0001406-1510915933:20287..20750Clytia hemisphaericaexon
TCONS_00036040-exon-sc0001406-1510915933:16381..17983TCONS_00036040-exon-sc0001406-1510915933:16381..17983Clytia hemisphaericaexon
TCONS_00036040-exon-sc0001406-1491911889:20287..20750TCONS_00036040-exon-sc0001406-1491911889:20287..20750Clytia hemisphaericaexon
TCONS_00036040-exon-sc0001406-1491911889:16381..17983TCONS_00036040-exon-sc0001406-1491911889:16381..17983Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001406supercontigsc0001406:16381..20750 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.14393	0.00520392	0.0337317	0.0837483	0	0	0	0	0	0	0	0.0833002	0.307533	0.641138	0	0	0.166983	0	0	0	0	0.198492	0	0	0	0	0	0	0	0.032744
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00036040 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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