TCONS_00036038 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036038
Unique NameTCONS_00036038
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1006

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036038 ID=TCONS_00036038|Name=TCONS_00036038|organism=Clytia hemisphaerica|type=transcript|length=1006bp
CACAAGGGTCCGAGCTTGACGCGTCTGGTAGAGAAGGAGGTACCACCATG
GTGACTGTACGGGAGGTTGTCTGCGTAGGAGCTGATTGATTGACGAGTGG
CGGAGCTGTTGGACGAGGTTGCTGCGAAGGTTGCAAGTGGACGAAGTTCT
TACTGGTGATGTCTGCAGATGCTGGAAGAAATTGCCGTAGACGGCGTCTG
TTACGGCGTGTCACTCTTCCGGTACCATCTACCTTCAAAGAGTAACTGTC
ATTGCCATGTGTCTCAACAACAGTTCCCGATCGATCCCAACGTTTTGGAT
GGTTACCGCTTTGGTTTTGAATATAGCAGCGGTGTCCAGGAGTCAAATTC
GGTAGTGCGTGTGCATGCTCGTTCCTCTTCTCTGCGGAGTGGTGGAAGCG
TTCCCGAAGTGCCTCTTCTTTCTTGGCCCATGCGTCTCGCCACAAGGGTC
GGATATTAGGGTTGGTAAACTTGTCCAGGCGACTGGCAAAGGCAAATGCA
TCTCTGATAGGTCTTCCGAATACGATTTGGGCTGGAGATAACTCACAATC
ACGATCAGGGGTGTTACGAAGTTGCATCATGGCGCGGAGGAAGCGATCAG
TATCAAGGCTACCACCGGGTCCAGTATTTGATCGTAGCAGACGTTTAGCA
GATTTTACAGCAACCTCAGCGCGTCCGTTCGACTGGGGATTGTAGGCCGA
GGAGATGCGATGGTTGACGCCCCATTTCTTCAAAAAGGTCTCCGTAGCAT
TGGATATGAATTCAGGACCACCGTCACTCGAGATTTCAGTTGGCACGCCA
AATCGGGAAAAATAGTTACGTAAGCATGCGATGAGGCCCTCTGATCCAGA
TTGAGGAGAGCCGTGCGGAGCTTTGAATACGTCTGACCATCCTGACAGTC
TATCACCGACGACCAGGTAATGTTGGGCTGCAGAGTCAAAGTAATCGGCA
TGAATCATCTCGAACAGAGTTGATGGTGGGTTAGAGAGAATTGCTGGAAG
TGGCGG
Run BLAST on NCBI

transcript from alignment at sc0001406:60808..61919+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036038 ID=TCONS_00036038|Name=TCONS_00036038|organism=Clytia hemisphaerica|type=transcript|length=1112bp|location=Sequence derived from alignment at sc0001406:60808..61919+ (Clytia hemisphaerica)
CACAAGGGTCCGAGCTTGACGCGTCTGGTAGAGAAGGAGGTACCACCATG
GTGACTGTACGGGAGGTTGTCTGCGTAGGAGCTGATTGATTGACGAGTGG
CGGAGCTGTTGGACGAGGTTGCTGCGAAGGTTGCAAGTGGACGAAGTTCT
TACTGGTGATGTCTGCAGATGCTGGAAGAAATTGCCGTAGACGGCGTCTG
TTACGGCGTGTCACTCTTCCGGTACCATCTACCTTCAAAGAGTAACTGTC
ATTGCCATGTGTCTCAACAACAGTTCCCGATCGATCCCAACGTTTTGGAT
GGTTACCGCTTTGGTTTTGAATATAGCAGCGGTGTCCAGGAGTCAAATTC
GGTAGTGCGTGTGCATGCTCGTTCCTCTTCTCTGCGGAGTGGTGGAAGCG
TTCCCGAAGTGCCTCTTCTTTCTTGGCCCATGCGTCTCGCCACAAGGGTC
GGATATTAGGGTTGGTAAACTTGTCCAGGCGACTGGCAAAGGCAAATGCA
TCTCTGATAGGTCTTCCGAATACGATTTGGGCTGGAGATAACTCACAATC
ACGATCAGGGGTGTTACGAAGTTGCATCATGGCGCGGAGGAAGCGATCAG
TATCAAGGCTACCACCGGGTCCAGTATTTGATCGTAGCAGACGTTTAGCA
GATTTTACAGCAACCTCAGCGCGTCCGTTCGACTGGGGATTGTAGGCCGA
GGAGATGCGATGGTTGACGCCCCATTTCTTCAAAAAGGTCTCCGTAGCAT
TGGATATGAATTCAGGACCACCGTCACTCGAGATTTCAGTTGGCACGCCA
AATCGGGAAAAATAGTTACGTAAGCATGCGATGAGGCCCTCTGCTCCAGA
TTGAGGAGAGCCGTGCGGAGCTTTGAATACGTCTGACCATCCTGACAGTC
TATCACCGACGACCAGGTAGTGTTGGGCTGNATGCGATGAGGCCCTCTGA
TCCAGATTGAGGAGAGCCGTGCGGAGCTTTGAATACGTCTGACCATCCTG
ACAGTCTATCACCGACGACCAGGTAATGTTGGGCTGCAGAGTCAAAGTAA
TCGGCATGAATCATCTCGAACAGAGTTGATGGTGGGTTAGAGAGAATTGC
TGGAAGTGGCGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021182XLOC_021182Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036038-exon-sc0001406-1491911889:60808..61642TCONS_00036038-exon-sc0001406-1491911889:60808..61642Clytia hemisphaericaexon
TCONS_00036038-exon-sc0001406-1510915933:60808..61642TCONS_00036038-exon-sc0001406-1510915933:60808..61642Clytia hemisphaericaexon
TCONS_00036038-exon-sc0001406-1575043694:60808..61642TCONS_00036038-exon-sc0001406-1575043694:60808..61642Clytia hemisphaericaexon
TCONS_00036038-exon-sc0001406-1491911889:61749..61919TCONS_00036038-exon-sc0001406-1491911889:61749..61919Clytia hemisphaericaexon
TCONS_00036038-exon-sc0001406-1510915933:61749..61919TCONS_00036038-exon-sc0001406-1510915933:61749..61919Clytia hemisphaericaexon
TCONS_00036038-exon-sc0001406-1575043694:61749..61919TCONS_00036038-exon-sc0001406-1575043694:61749..61919Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001406supercontigsc0001406:60808..61919 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0273084	0.217041	0.201605	0.0449768	0.407483	0.189745	0.601774	0.340231	0.423089	0.249741	0.541185	0.222375	0.517138	0.474805	0	0.403949	1.22498	0.812683	0.303212	0.194679	0.347467	0.292778	0	0.118259	0	0.158697	0	0.306642	8.18261e-05	0.139546
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001584Integrase_cat-core
IPR012337RNaseH-like_dom
Vocabulary: Biological Process
TermDefinition
GO:0015074DNA integration
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
molecular_function GO:0003676 nucleic acid binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00036038 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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