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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00036035 ID=TCONS_00036035|Name=TCONS_00036035|organism=Clytia hemisphaerica|type=transcript|length=4419bp
ATGGCCAACTGACAAACTGAAAACATAGAGTATAGTATATAGcaatatga
aaacaaaaactacaCGGGGAGTAATAGCAAACAGCATTAAATAAAAATGT
GCtaaagaaaatgtaaaatgaaaatgacaatAGAGGTATAAAGCAAATAT
AGGTACATAACCTTCAGCGAATACAcagtaaaaataataaaaataataat
aataaacctATTAGAACACCATGAGATGTCGGGGAGGGAGGAGGAGCAAA
AATACAGGTCAGCATGCACAGTGAAGAACTGAAGAAAGAGGCTGTTCAGG
TACCATGTGCTCTTTAAATACTCATGAGAGTGAGGCTACATAAAACAGAG
GCTGAATGAAGAGTACAGATAAAAACATAACACTATGAATCTAAAACCTG
ATATACCACATATATCAGGCCATTAAACACATAGAGTAAGAAAAGGACAC
AGGGTACCTGTCATTGGTACAATCACAGTTCTTCTGAATAGACTAGCATG
GGCTAggacaaaaatatacaaaaagagATAGGTCCAAACCCAATGTGAGA
ATGTAGtgggaaaaaaaaatatatatattaggAAAAGCTATATATAGGTG
GGGCACAGTGAAAGACTAGGACTAGCACTCAAGAAAGGAAGTGATGGAAT
GTTGGGCACGCAAGCGCTGGGACAAAGGCATGTGCAGGTAAAGGTAAATA
GCGTCAGACTTCCAGTCACCCATGACAGCTATAGTGTCCAGCGGGACGCC
AGCTTCAAGGGCAAGGGAAGCACCACCCCTTCTGAAGGAATGGGAACCAT
ACTGAGCGGAATTGAGACCTAAACGAGTGAGGAAGAACTGCAGTGAATGC
ATGAACTCCTTATACGTGAAGATCCGGTAAGTGACACGAGAAGAATCCCT
CCAGCAAAAGGCCTGGTCATTGGGACGAGTATGAGGAGTGAGAGAGAACG
CACGGGACACGGCCCAAACTGGACACAGGGGAGAAGAGCTTGCAACCAGT
GGAATGGTAACATACGTTGACCAAACTGGATCGTCTTACTCCACCTGACC
CTGATCAGAATTGAAGACCCAGAAAAGCTAAAGTCTGAACGAGTGAGGTA
GGTCAAGGGGGAGAACTCTGACACAGAAGAAGGCAGGAGATGGCTCTCAC
GgaaaaacccaaaaaaagaGACCAAGCAGACTGCCCAAAACGACGCATGC
TTACTATCCATGAGATTGAGGAGACCACGGATACGAAGCAGGATGTCTGT
GGTCATAGGGAGCCTTGGGAGAGGAGGGGAGCCTAAGGTGCGCTTGATAC
CCTTCAGGACAGTGGAGAGGGTCCAGTTATCCGTCAGTGGGTTAGGGAGG
CCCTGGTCCCTGTgaaaaatacccacaaaattAATATATATACAAACAGA
TTGCGGCAAAAGAAATCTAGCTAGGTATGCAGCATACATACAGAGGTGAA
CAGTAGAAATAGGTGCTGGCTCAATGCCCAGTAGGCTGCAAAAACGGAAG
TATGTATTGCGGTGAGTACGGTAGGCCTTCACAGTGTTGGGAGCATAGGT
GGCCTGTCTGTAGAATAGGACGTCTGCCAAGAGAGAGGAGGACAGTGCTC
GACCTAAAAGGCAGAAGAAAAACAGAGGCTAGAGGAGTAAAGACCCAGCA
GAAAGAAGTATGACAAGGGAGACATGTGTAGCGTGGCAGGGGCTACAAGG
GCTGGCATCCCCCCGGAGGCAAGCAGATGGTGACAAAAAGCTTGCATGTT
AGGACGGAAGTGAAGACGAGAGATATGATCTGCCAGAACATTCAATTTTC
CCGGAATATGAAATGCCCGAAGACGGAAATTGTACATGGCAGAACACCAA
AAGAGACGTCTCAGGTAAGTCATCATAACCGGATTTTTTGTGGTACCCTT
GTTTAGCATAGCAACAGCCGCTTGGTTGTCACAGTAAACGTGGACTACCT
TATTCTTGAATGATTCCGCCCAACGCTCCGCAGAAAAAACTACACATAAA
GCTTCCTTGTACGTGATATGAAGACCTGACAGTTCAGGAGCATCCACCAG
AAGATTAGAATAGAACCAATCCTCTCCAAAGGATGCACCGATTCCCCAGG
TGCATGCATCTGTGTGGAGGTTAGTAACAGGGCGTGAGTCATGGAATGAA
CAAAACCCATTGAAAACTTCCAAAAAACTAACCCACCAATCTAGGTCTTT
GAAAAACTCCTCTGAGAGCAAGCACTTAGCAGACTGGGAGGCAAGGGGGG
ACATGAGATCAAGGATCCTCCGAAGAAAGGTTCTACCGCCATGAACCACC
TTGCAGGCCCAGTTAAGGCGACCCGCTAATTGTTGAAGCTGTCTCTTGGA
CGCTCGCACTCTAGTTTGAAAAGAGAATAGCAGGTCCTTGAGATCCCTGA
GCTTCCTTTGAGACAAAGAAAGGGACAAGGACTGTGTGTCAATGTCCACA
CCTAAAAAGGTAAGTTTCTGGCAGGGTTGGACCAACTTGCTTGGGCTTAT
CATGAAACCCAGTTCAAGTAAGAGGGCACAGAGGGTGTCAAATGCTCGCT
GACATTCTTTGAATGTACGGCCAACTACAAGAAAGTCATCCAAGTAAACA
ACCAGTTTAGAGAATCCTTTCTTGGCCATCATGCGCTTAACAGACTGTGT
GATACGATGAAAAATACCAGGAGCACTGCGAGCTCCAAACGGAAGACGTG
TGTCTATTAGGTAGGTGGAATGTCGGTCATCCTTGAACCGCCACTTCAAA
CCTAGTGCTGAGTAGTTTCCAGGGTGGACGGGAACAGAGCGATAGGCCCT
GCGAAGGTCCACCTTAGCAATGTAAAAGTCCTTCCCTATCAGTTTAGTAG
CATCATCTAGGGTCTGGAACTTTTGTTTTTCAATGTCAATGAAAGAGTTT
ACCCCACGCCCCGGAGGCATGGAGCAATCGTGGATTATGCGCAAATCCTC
AGAGTCTGGCTTTGGAACGGCTCCAAGTGCACTGACAATGGTAGGTTTGC
AATTAGCAATGCGATAATTTCCAGCCGCTAGTTCCTCGAGAATGGTGGCT
TCAACCTTCTCTTTGGCACCTGGGCTGACAGCAGATGTGTAGTTGTCCAC
CTCGGCAATCGAGATGGGAGCATCAAGGGGCAGGAGCTTAAAACCGTTGG
TGACCCCGTCAAGAATGAAATCCTTGTCAGGATCCCCTTCAAGCTCCCTC
TCCCAAACAAACGAAGATAGGTTTGAAAGAGGAGGTGAGGGTTGTCATTC
ATCCCCATCTTTGGAGTTATCACCACGTGACGGGTGATTACATCCAGCAT
GTTGTCTGTTCCCACAGGCTTGCGAACCAACTTTACGGTTGCAAGCGTGG
GAAAACTTGCATTGGGGACGTTGACATCCCTTACGAGAGTTGAACATCCT
ACAGATCTCTTCACCACTGGGAAGATGTGAGACAGTAGTAGTCCGAGAGC
CCCCAGTCTTACCTGACCCAAGAAAAGGTAAGGAAGAGCCGGAGAACTTG
TCTTGTCCCTTAAGCGCGCTTGCCCATTTTGGTAAAAGCATTACCTCATG
TAGGTGACTGTTATCAGTGGCCCAGGAAAAGCCATATGTGTGCTGTAATA
TGCGATATTCATCATCGTACAGCAGCACAGACTCCCAGGAATACTTAGTC
GCCAATTCTAAGATCTTAACAGAGTACGAGAGATACTCCCGGACTTCTTG
CATGGTGCtcagttttttagaaaataatagTTCATAAAAAATTCGAAGAT
TTGCTATGCTAAATTGTTCAACAGTAATGTTTTTGAGCTTCGGTTTTGAA
TCATTTAAGATGAATGAGAGTTTACAGTTTCTATCATAGGAGAGGACCTT
TTCCTCTTCCGTGGGACGAGCCCTTGAAACAAAGTCAACTATTCGTAATG
GCTTACCACGAGTCCCATCGTTGGACAGACGAGATGGTCGAAGAAAGATT
TCAGTGCTATCAATTCCACCAACATTACCATTTCCACCACGAACATTATT
TACAGCCAAGGCAAGGGGGTCAGAAAGATGACCTCtagagttttctaata
aagatcCACTTTGCAAAACTTGTGGGCGTACAGGGCGATCGTCATCGAAC
AGCGAAGGTAAGATGGCGGCGTTTGTTGTAGCTTGAGACGTTGGGGTGGG
GGCGGGTTGATGACGGGAGGCGGAGACAGAAGAGTTCGTTGATTGGATCG
ATTGGGATTGGAGCCTGCGAGCTTTCAGAAGGTCGATCTCACGTTTCTTT
TGCTCTATCTGTTGCAGCAAGAGGTTCTCCTCATTATTGATCTCGCTCAA
AACACGCTGTTCTTCTTGTTCGAGAAGTTCTAATTGTTTTTTATAATATG
TGACTTGGGCGCTTCTATCTACGAGGGCGTCATTCGAAATGGTAGACGAG
TTGTGACGTCCGGGAGATN Run BLAST on NCBI transcript from alignment at sc0001406:16381..20799+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00036035 ID=TCONS_00036035|Name=TCONS_00036035|organism=Clytia hemisphaerica|type=transcript|length=4419bp|location=Sequence derived from alignment at sc0001406:16381..20799+ (Clytia hemisphaerica)
ATGGCCAACTGACAAACTGAAAACATAGAGTATAGTATATAGcaatatga
aaacaaaaactacaCGGGGAGTAATAGCAAACAGCATTAAATAAAAATGT
GCtaaagaaaatgtaaaatgaaaatgacaatAGAGGTATAAAGCAAATAT
AGGTACATAACCTTCAGCGAATACAcagtaaaaataataaaaataataat
aataaacctATTAGAACACCATGAGATGTCGGGGAGGGAGGAGGAGCAAA
AATACAGGTCAGCATGCACAGTGAAGAACTGAAGAAAGAGGCTGTTCAGG
TACCATGTGCTCTTTAAATACTCATGAGAGTGAGGCTACATAAAACAGAG
GCTGAATGAAGAGTACAGATAAAAACATAACACTATGAATCTAAAACCTG
ATATACCACATATATCAGGCCATTAAACACATAGAGTAAGAAAAGGACAC
AGGGTACCTGTCATTGGTACAATCACAGTTCTTCTGAATAGACTAGCATG
GGCTAggacaaaaatatacaaaaagagATAGGTCCAAACCCAATGTGAGA
ATGTAGtgggaaaaaaaaatatatatattaggAAAAGCTATATATAGGTG
GGGCACAGTGAAAGACTAGGACTAGCACTCAAGAAAGGAAGTGATGGAAT
GTTGGGCACGCAAGCGCTGGGACAAAGGCATGTGCAGGTAAAGGTAAATA
GCGTCAGACTTCCAGTCACCCATGACAGCTATAGTGTCCAGCGGGACGCC
AGCTTCAAGGGCAAGGGAAGCACCACCCCTTCTGAAGGAATGGGAACCAT
ACTGAGCGGAATTGAGACCTAAACGAGTGAGGAAGAACTGCAGTGAATGC
ATGAACTCCTTATACGTGAAGATCCGGTAAGTGACACGAGAAGAATCCCT
CCAGCAAAAGGCCTGGTCATTGGGACGAGTATGAGGAGTGAGAGAGAACG
CACGGGACACGGCCCAAACTGGACACAGGGGAGAAGAGCTTGCAACCAGT
GGAATGGTAACATACGTTGACCAAACTGGATCGTCTTACTCCACCTGACC
CTGATCAGAATTGAAGACCCAGAAAAGCTAAAGTCTGAACGAGTGAGGTA
GGTCAAGGGGGAGAACTCTGACACAGAAGAAGGCAGGAGATGGCTCTCAC
GgaaaaacccaaaaaaagaGACCAAGCAGACTGCCCAAAACGACGCATGC
TTACTATCCATGAGATTGAGGAGACCACGGATACGAAGCAGGATGTCTGT
GGTCATAGGGAGCCTTGGGAGAGGAGGGGAGCCTAAGGTGCGCTTGATAC
CCTTCAGGACAGTGGAGAGGGTCCAGTTATCCGTCAGTGGGTTAGGGAGG
CCCTGGTCCCTGTgaaaaatacccacaaaattAATATATATACAAACAGA
TTGCGGCAAAAGAAATCTAGCTAGGTATGCAGCATACATACAGAGGTGAA
CAGTAGAAATAGGTGCTGGCTCAATGCCCAGTAGGCTGCAAAAACGGAAG
TATGTATTGCGGTGAGTACGGTAGGCCTTCACAGTGTTGGGAGCATAGGT
GGCCTGTCTGTAGAATAGGACGTCTGCCAAGAGAGAGGAGGACAGTGCTC
GACCTAAAAGGCAGAAGAAAAACAGAGGCTAGAGGAGTAAAGACCCAGCA
GAAAGAAGTATGACAAGGGAGACATGTGTAGCGTGGCAGGGGCTACAAGG
GCTGGCATCCCCCCGGAGGCAAGCAGATGGTGACAAAAAGCTTGCATGTT
AGGACGGAAGTGAAGACGAGAGATATGATCTGCCAGAACATTCAATTTTC
CCGGAATATGAAATGCCCGAAGACGGAAATTGTACATGGCAGAACACCAA
AAGAGACGTCTCAGGTAAGTCATCATAACCGGATTTTTTGTGGTACCCTT
GTTTAGCATAGCAACAGCCGCTTGGTTGTCACAGTAAACGTGGACTACCT
TATTCTTGAATGATTCCGCCCAACGCTCCGCAGAAAAAACTACACATAAA
GCTTCCTTGTACGTGATATGAAGACCTGACAGTTCAGGAGCATCCACCAG
AAGATTAGAATAGAACCAATCCTCTCCAAAGGATGCACCGATTCCCCAGG
TGCATGCATCTGTGTGGAGGTTAGTAACAGGGCGTGAGTCATGGAATGAA
CAAAACCCATTGAAAACTTCCAAAAAACTAACCCACCAATCTAGGTCTTT
GAAAAACTCCTCTGAGAGCAAGCACTTAGCAGACTGGGAGGCAAGGGGGG
ACATGAGATCAAGGATCCTCCGAAGAAAGGTTCTACCGCCATGAACCACC
TTGCAGGCCCAGTTAAGGCGACCCGCTAATTGTTGAAGCTGTCTCTTGGA
CGCTCGCACTCTAGTTTGAAAAGAGAATAGCAGGTCCTTGAGATCCCTGA
GCTTCCTTTGAGACAAAGAAAGGGACAAGGACTGTGTGTCAATGTCCACA
CCTAAAAAGGTAAGTTTCTGGCAGGGTTGGACCAACTTGCTTGGGCTTAT
CATGAAACCCAGTTCAAGTAAGAGGGCACAGAGGGTGTCAAATGCTCGCT
GACATTCTTTGAATGTACGGCCAACTACAAGAAAGTCATCCAAGTAAACA
ACCAGTTTAGAGAATCCTTTCTTGGCCATCATGCGCTTAACAGACTGTGT
GATACGATGAAAAATACCAGGAGCACTGCGAGCTCCAAACGGAAGACGTG
TGTCTATTAGGTAGGTGGAATGTCGGTCATCCTTGAACCGCCACTTCAAA
CCTAGTGCTGAGTAGTTTCCAGGGTGGACGGGAACAGAGCGATAGGCCCT
GCGAAGGTCCACCTTAGCAATGTAAAAGTCCTTCCCTATCAGTTTAGTAG
CATCATCTAGGGTCTGGAACTTTTGTTTTTCAATGTCAATGAAAGAGTTT
ACCCCACGCCCCGGAGGCATGGAGCAATCGTGGATTATGCGCAAATCCTC
AGAGTCTGGCTTTGGAACGGCTCCAAGTGCACTGACAATGGTAGGTTTGC
AATTAGCAATGCGATAATTTCCAGCCGCTAGTTCCTCGAGAATGGTGGCT
TCAACCTTCTCTTTGGCACCTGGGCTGACAGCAGATGTGTAGTTGTCCAC
CTCGGCAATCGAGATGGGAGCATCAAGGGGCAGGAGCTTAAAACCGTTGG
TGACCCCGTCAAGAATGAAATCCTTGTCAGGATCCCCTTCAAGCTCCCTC
TCCCAAACAAACGAAGATAGGTTTGAAAGAGGAGGTGAGGGTTGTCATTC
ATCCCCATCTTTGGAGTTATCACCACGTGACGGGTGATTACATCCAGCAT
GTTGTCTGTTCCCACAGGCTTGCGAACCAACTTTACGGTTGCAAGCGTGG
GAAAACTTGCATTGGGGACGTTGACATCCCTTACGAGAGTTGAACATCCT
ACAGATCTCTTCACCACTGGGAAGATGTGAGACAGTAGTAGTCCGAGAGC
CCCCAGTCTTACCTGACCCAAGAAAAGGTAAGGAAGAGCCGGAGAACTTG
TCTTGTCCCTTAAGCGCGCTTGCCCATTTTGGTAAAAGCATTACCTCATG
TAGGTGACTGTTATCAGTGGCCCAGGAAAAGCCATATGTGTGCTGTAATA
TGCGATATTCATCATCGTACAGCAGCACAGACTCCCAGGAATACTTAGTC
GCCAATTCTAAGATCTTAACAGAGTACGAGAGATACTCCCGGACTTCTTG
CATGGTGCtcagttttttagaaaataatagTTCATAAAAAATTCGAAGAT
TTGCTATGCTAAATTGTTCAACAGTAATGTTTTTGAGCTTCGGTTTTGAA
TCATTTAAGATGAATGAGAGTTTACAGTTTCTATCATAGGAGAGGACCTT
TTCCTCTTCCGTGGGACGAGCCCTTGAAACAAAGTCAACTATTCGTAATG
GCTTACCACGAGTCCCATCGTTGGACAGACGAGATGGTCGAAGAAAGATT
TCAGTGCTATCAATTCCACCAACATTACCATTTCCACCACGAACATTATT
TACAGCCAAGGCAAGGGGGTCAGAAAGATGACCTCtagagttttctaata
aagatcCACTTTGCAAAACTTGTGGGCGTACAGGGCGATCGTCATCGAAC
AGCGAAGGTAAGATGGCGGCGTTTGTTGTAGCTTGAGACGTTGGGGTGGG
GGCGGGTTGATGACGGGAGGCGGAGACAGAAGAGTTCGTTGATTGGATCG
ATTGGGATTGGAGCCTGCGAGCTTTCAGAAGGTCGATCTCACGTTTCTTT
TGCTCTATCTGTTGCAGCAAGAGGTTCTCCTCATTATTGATCTCGCTCAA
AACACGCTGTTCTTCTTGTTCGAGAAGTTCTAATTGTTTTTTATAATATG
TGACTTGGGCGCTTCTATCTACGAGGGCGTCATTCGAAATGGTAGACGAG
TTGTGACGTCCGGGAGATN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00036035-exon-sc0001406-1491911889:16381..20799 | TCONS_00036035-exon-sc0001406-1491911889:16381..20799 | Clytia hemisphaerica | exon |
| TCONS_00036035-exon-sc0001406-1510915933:16381..20799 | TCONS_00036035-exon-sc0001406-1510915933:16381..20799 | Clytia hemisphaerica | exon |
| TCONS_00036035-exon-sc0001406-1575043694:16381..20799 | TCONS_00036035-exon-sc0001406-1575043694:16381..20799 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001406 | supercontig | sc0001406:16381..20799 + |
Blast
The following BLAST results are available for this feature:
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