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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00036034 ID=TCONS_00036034|Name=TCONS_00036034|organism=Clytia hemisphaerica|type=transcript|length=2925bp
AATAATGGCCAACTGACAAACTGAAAACATAGAGTATAGTATATAGcaat
atgaaaacaaaaactacaCGGGGAGTAATAGCAAACAGCATTAAATAAAA
ATGTGCtaaagaaaatgtaaaatgaaaatgacaatAGAGGTATAAAGCAA
ATATAGGTACATAACCTTCAGCGAATACAcagtaaaaataataaaaataa
taataataaacctATTAGAACACCATGAGATGTCGGGGAGGGAGGAGGAG
CAAAAATACAGGTCAGCATGCACAGTGAAGAACTGAAGAAAGAGGCTGTT
CAGGTACCATGTGCTCTTTAAATACTCATGAGAGTGAGGCTACATAAAAC
AGAGGCTGAATGAAGAGTACAGATAAAAACATAACACTATGAATCTAAAA
CCTGATATACCACATATATCAGGCCATTAAACACATAGAGTAAGAAAAGG
ACACAGGGTACCTGTCATTGGTACAATCACAGTTCTTCTGAATAGACTAG
CATGGGCTAggacaaaaatatacaaaaagagCTGACAGTTCAGGAGCATC
CACCAGAAGATTAGAATAGAACCAATCCTCTCCAAAGGATGCACCGATTC
CCCAGGTGCATGCATCTGTGTGGAGGTTAGTAACAGGGCGTGAGTCATGG
AATGAACAAAACCCATTGAAAACTTCCAAAAAACTAACCCACCAATCTAG
GTCTTTGAAAAACTCCTCTGAGAGCAAGCACTTAGCAGACTGGGAGGCAA
GGGGGGACATGAGATCAAGGATCCTCCGAAGAAAGGTTCTACCGCCATGA
ACCACCTTGCAGGCCCAGTTAAGGCGACCCGCTAATTGTTGAAGCTGTCT
CTTGGACGCTCGCACTCTAGTTTGAAAAGAGAATAGCAGGTCCTTGAGAT
CCCTGAGCTTCCTTTGAGACAAAGAAAGGGACAAGGACTGTGTGTCAATG
TCCACACCTAAAAAGGTAAGTTTCTGGCAGGGTTGGACCAACTTGCTTGG
GCTTATCATGAAACCCAGTTCAAGTAAGAGGGCACAGAGGGTGTCAAATG
CTCGCTGACATTCTTTGAATGTACGGCCAACTACAAGAAAGTCATCCAAG
TAAACAACCAGTTTAGAGAATCCTTTCTTGGCCATCATGCGCTTAACAGA
CTGTGTGATACGATGAAAAATACCAGGAGCACTGCGAGCTCCAAACGGAA
GACGTGTGTCTATTAGGTAGGTGGAATGTCGGTCATCCTTGAACCGCCAC
TTCAAACCTAGTGCTGAGTAGTTTCCAGGGTGGACGGGAACAGAGCGATA
GGCCCTGCGAAGGTCCACCTTAGCAATGTAAAAGTCCTTCCCTATCAGTT
TAGTAGCATCATCTAGGGTCTGGAACTTTTGTTTTTCAATGTCAATGAAA
GAGTTTACCCCACGCCCCGGAGGCATGGAGCAATCGTGGATTATGCGCAA
ATCCTCAGAGTCTGGCTTTGGAACGGCTCCAAGTGCACTGACAATGGTAG
GTTTGCAATTAGCAATGCGATAATTTCCAGCCGCTAGTTCCTCGAGAATG
GTGGCTTCAACCTTCTCTTTGGCACCTGGGCTGACAGCAGATGTGTAGTT
GTCCACCTCGGCAATCGAGATGGGAGCATCAAGGGGCAGGAGCTTAAAAC
CGTTGGTGACCCCGTCAAGAATGAAATCCTTGTCAGGATCCCCTTCAAGC
TCCCTCTCCCAAACAAACGAAGATAGGTTTGAAAGAGGAGGTGAGGGTTG
TCATTCATCCCCATCTTTGGAGTTATCACCACGTGACGGGTGATTACATC
CAGCATGTTGTCTGTTCCCACAGGCTTGCGAACCAACTTTACGGTTGCAA
GCGTGGGAAAACTTGCATTGGGGACGTTGACATCCCTTACGAGAGTTGAA
CATCCTACAGATCTCTTCACCACTGGGAAGATGTGAGACAGTAGTAGTCC
GAGAGCCCCCAGTCTTACCTGACCCAAGAAAAGGTAAGGAAGAGCCGGAG
AACTTGTCTTGTCCCTTAAGCGCGCTTGCCCATTTTGGTAAAAGCATTAC
CTCATGTAGGTGACTGTTATCAGTGGCCCAGGAAAAGCCATATGTGTGCT
GTAATATGCGATATTCATCATCGTACAGCAGCACAGACTCCCAGGAATAC
TTAGTCGCCAATTCTAAGATCTTAACAGAGTACGAGAGATACTCCCGGAC
TTCTTGCATGGTGCtcagttttttagaaaataatagTTCATAAAAAATTC
GAAGATTTGCTATGCTAAATTGTTCAACAGTAATGTTTTTGAGCTTCGGT
TTTGAATCATTTAAGATGAATGAGAGTTTACAGTTTCTATCATAGGAGAG
GACCTTTTCCTCTTCCGTGGGACGAGCCCTTGAAACAAAGTCAACTATTC
GTAATGGCTTACCACGAGTCCCATCGTTGGACAGACGAGATGGTCGAAGA
AAGATTTCAGTGCTATCAATTCCACCAACATTACCATTTCCACCACGAAC
ATTATTTACAGCCAAGGCAAGGGGGTCAGAAAGATGACCTCtagagtttt
ctaataaagatcCACTTTGCAAAACTTGTGGGCGTACAGGGCGATCGTCA
TCGAACAGCGAAGGTAAGATGGCGGCGTTTGTTGTAGCTTGAGACGTTGG
GGTGGGGGCGGGTTGATGACGGGAGGCGGAGACAGAAGAGTTCGTTGATT
GGATCGATTGGGATTGGAGCCTGCGAGCTTTCAGAAGGTCGATCTCACGT
TTCTTTTGCTCTATCTGTTGCAGCAAGAGGTTCTCCTCATTATTGATCTC
GCTCAAAACACGCTGTTCTTCTTGTTCGAGAAGTTCTAATTGTTTTTTAT
AATATGTGACTTGGGCGCTTCTATCTACGAGGGCGTCATTCGAAATGGTA
GACGAGTTGTGACGTCCGGGAGATN Run BLAST on NCBI transcript from alignment at sc0001406:16377..20799+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00036034 ID=TCONS_00036034|Name=TCONS_00036034|organism=Clytia hemisphaerica|type=transcript|length=4423bp|location=Sequence derived from alignment at sc0001406:16377..20799+ (Clytia hemisphaerica)
AATAATGGCCAACTGACAAACTGAAAACATAGAGTATAGTATATAGcaat
atgaaaacaaaaactacaCGGGGAGTAATAGCAAACAGCATTAAATAAAA
ATGTGCtaaagaaaatgtaaaatgaaaatgacaatAGAGGTATAAAGCAA
ATATAGGTACATAACCTTCAGCGAATACAcagtaaaaataataaaaataa
taataataaacctATTAGAACACCATGAGATGTCGGGGAGGGAGGAGGAG
CAAAAATACAGGTCAGCATGCACAGTGAAGAACTGAAGAAAGAGGCTGTT
CAGGTACCATGTGCTCTTTAAATACTCATGAGAGTGAGGCTACATAAAAC
AGAGGCTGAATGAAGAGTACAGATAAAAACATAACACTATGAATCTAAAA
CCTGATATACCACATATATCAGGCCATTAAACACATAGAGTAAGAAAAGG
ACACAGGGTACCTGTCATTGGTACAATCACAGTTCTTCTGAATAGACTAG
CATGGGCTAggacaaaaatatacaaaaagagATAGGTCCAAACCCAATGT
GAGAATGTAGtgggaaaaaaaaatatatatattaggAAAAGCTATATATA
GGTGGGGCACAGTGAAAGACTAGGACTAGCACTCAAGAAAGGAAGTGATG
GAATGTTGGGCACGCAAGCGCTGGGACAAAGGCATGTGCAGGTAAAGGTA
AATAGCGTCAGACTTCCAGTCACCCATGACAGCTATAGTGTCCAGCGGGA
CGCCAGCTTCAAGGGCAAGGGAAGCACCACCCCTTCTGAAGGAATGGGAA
CCATACTGAGCGGAATTGAGACCTAAACGAGTGAGGAAGAACTGCAGTGA
ATGCATGAACTCCTTATACGTGAAGATCCGGTAAGTGACACGAGAAGAAT
CCCTCCAGCAAAAGGCCTGGTCATTGGGACGAGTATGAGGAGTGAGAGAG
AACGCACGGGACACGGCCCAAACTGGACACAGGGGAGAAGAGCTTGCAAC
CAGTGGAATGGTAACATACGTTGACCAAACTGGATCGTCTTACTCCACCT
GACCCTGATCAGAATTGAAGACCCAGAAAAGCTAAAGTCTGAACGAGTGA
GGTAGGTCAAGGGGGAGAACTCTGACACAGAAGAAGGCAGGAGATGGCTC
TCACGgaaaaacccaaaaaaagaGACCAAGCAGACTGCCCAAAACGACGC
ATGCTTACTATCCATGAGATTGAGGAGACCACGGATACGAAGCAGGATGT
CTGTGGTCATAGGGAGCCTTGGGAGAGGAGGGGAGCCTAAGGTGCGCTTG
ATACCCTTCAGGACAGTGGAGAGGGTCCAGTTATCCGTCAGTGGGTTAGG
GAGGCCCTGGTCCCTGTgaaaaatacccacaaaattAATATATATACAAA
CAGATTGCGGCAAAAGAAATCTAGCTAGGTATGCAGCATACATACAGAGG
TGAACAGTAGAAATAGGTGCTGGCTCAATGCCCAGTAGGCTGCAAAAACG
GAAGTATGTATTGCGGTGAGTACGGTAGGCCTTCACAGTGTTGGGAGCAT
AGGTGGCCTGTCTGTAGAATAGGACGTCTGCCAAGAGAGAGGAGGACAGT
GCTCGACCTAAAAGGCAGAAGAAAAACAGAGGCTAGAGGAGTAAAGACCC
AGCAGAAAGAAGTATGACAAGGGAGACATGTGTAGCGTGGCAGGGGCTAC
AAGGGCTGGCATCCCCCCGGAGGCAAGCAGATGGTGACAAAAAGCTTGCA
TGTTAGGACGGAAGTGAAGACGAGAGATATGATCTGCCAGAACATTCAAT
TTTCCCGGAATATGAAATGCCCGAAGACGGAAATTGTACATGGCAGAACA
CCAAAAGAGACGTCTCAGGTAAGTCATCATAACCGGATTTTTTGTGGTAC
CCTTGTTTAGCATAGCAACAGCCGCTTGGTTGTCACAGTAAACGTGGACT
ACCTTATTCTTGAATGATTCCGCCCAACGCTCCGCAGAAAAAACTACACA
TAAAGCTTCCTTGTACGTGATATGAAGACCTGACAGTTCAGGAGCATCCA
CCAGAAGATTAGAATAGAACCAATCCTCTCCAAAGGATGCACCGATTCCC
CAGGTGCATGCATCTGTGTGGAGGTTAGTAACAGGGCGTGAGTCATGGAA
TGAACAAAACCCATTGAAAACTTCCAAAAAACTAACCCACCAATCTAGGT
CTTTGAAAAACTCCTCTGAGAGCAAGCACTTAGCAGACTGGGAGGCAAGG
GGGGACATGAGATCAAGGATCCTCCGAAGAAAGGTTCTACCGCCATGAAC
CACCTTGCAGGCCCAGTTAAGGCGACCCGCTAATTGTTGAAGCTGTCTCT
TGGACGCTCGCACTCTAGTTTGAAAAGAGAATAGCAGGTCCTTGAGATCC
CTGAGCTTCCTTTGAGACAAAGAAAGGGACAAGGACTGTGTGTCAATGTC
CACACCTAAAAAGGTAAGTTTCTGGCAGGGTTGGACCAACTTGCTTGGGC
TTATCATGAAACCCAGTTCAAGTAAGAGGGCACAGAGGGTGTCAAATGCT
CGCTGACATTCTTTGAATGTACGGCCAACTACAAGAAAGTCATCCAAGTA
AACAACCAGTTTAGAGAATCCTTTCTTGGCCATCATGCGCTTAACAGACT
GTGTGATACGATGAAAAATACCAGGAGCACTGCGAGCTCCAAACGGAAGA
CGTGTGTCTATTAGGTAGGTGGAATGTCGGTCATCCTTGAACCGCCACTT
CAAACCTAGTGCTGAGTAGTTTCCAGGGTGGACGGGAACAGAGCGATAGG
CCCTGCGAAGGTCCACCTTAGCAATGTAAAAGTCCTTCCCTATCAGTTTA
GTAGCATCATCTAGGGTCTGGAACTTTTGTTTTTCAATGTCAATGAAAGA
GTTTACCCCACGCCCCGGAGGCATGGAGCAATCGTGGATTATGCGCAAAT
CCTCAGAGTCTGGCTTTGGAACGGCTCCAAGTGCACTGACAATGGTAGGT
TTGCAATTAGCAATGCGATAATTTCCAGCCGCTAGTTCCTCGAGAATGGT
GGCTTCAACCTTCTCTTTGGCACCTGGGCTGACAGCAGATGTGTAGTTGT
CCACCTCGGCAATCGAGATGGGAGCATCAAGGGGCAGGAGCTTAAAACCG
TTGGTGACCCCGTCAAGAATGAAATCCTTGTCAGGATCCCCTTCAAGCTC
CCTCTCCCAAACAAACGAAGATAGGTTTGAAAGAGGAGGTGAGGGTTGTC
ATTCATCCCCATCTTTGGAGTTATCACCACGTGACGGGTGATTACATCCA
GCATGTTGTCTGTTCCCACAGGCTTGCGAACCAACTTTACGGTTGCAAGC
GTGGGAAAACTTGCATTGGGGACGTTGACATCCCTTACGAGAGTTGAACA
TCCTACAGATCTCTTCACCACTGGGAAGATGTGAGACAGTAGTAGTCCGA
GAGCCCCCAGTCTTACCTGACCCAAGAAAAGGTAAGGAAGAGCCGGAGAA
CTTGTCTTGTCCCTTAAGCGCGCTTGCCCATTTTGGTAAAAGCATTACCT
CATGTAGGTGACTGTTATCAGTGGCCCAGGAAAAGCCATATGTGTGCTGT
AATATGCGATATTCATCATCGTACAGCAGCACAGACTCCCAGGAATACTT
AGTCGCCAATTCTAAGATCTTAACAGAGTACGAGAGATACTCCCGGACTT
CTTGCATGGTGCtcagttttttagaaaataatagTTCATAAAAAATTCGA
AGATTTGCTATGCTAAATTGTTCAACAGTAATGTTTTTGAGCTTCGGTTT
TGAATCATTTAAGATGAATGAGAGTTTACAGTTTCTATCATAGGAGAGGA
CCTTTTCCTCTTCCGTGGGACGAGCCCTTGAAACAAAGTCAACTATTCGT
AATGGCTTACCACGAGTCCCATCGTTGGACAGACGAGATGGTCGAAGAAA
GATTTCAGTGCTATCAATTCCACCAACATTACCATTTCCACCACGAACAT
TATTTACAGCCAAGGCAAGGGGGTCAGAAAGATGACCTCtagagttttct
aataaagatcCACTTTGCAAAACTTGTGGGCGTACAGGGCGATCGTCATC
GAACAGCGAAGGTAAGATGGCGGCGTTTGTTGTAGCTTGAGACGTTGGGG
TGGGGGCGGGTTGATGACGGGAGGCGGAGACAGAAGAGTTCGTTGATTGG
ATCGATTGGGATTGGAGCCTGCGAGCTTTCAGAAGGTCGATCTCACGTTT
CTTTTGCTCTATCTGTTGCAGCAAGAGGTTCTCCTCATTATTGATCTCGC
TCAAAACACGCTGTTCTTCTTGTTCGAGAAGTTCTAATTGTTTTTTATAA
TATGTGACTTGGGCGCTTCTATCTACGAGGGCGTCATTCGAAATGGTAGA
CGAGTTGTGACGTCCGGGAGATN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00036034-exon-sc0001406-1491911889:16377..16907 | TCONS_00036034-exon-sc0001406-1491911889:16377..16907 | Clytia hemisphaerica | exon |
| TCONS_00036034-exon-sc0001406-1510915933:16377..16907 | TCONS_00036034-exon-sc0001406-1510915933:16377..16907 | Clytia hemisphaerica | exon |
| TCONS_00036034-exon-sc0001406-1575043694:16377..16907 | TCONS_00036034-exon-sc0001406-1575043694:16377..16907 | Clytia hemisphaerica | exon |
| TCONS_00036034-exon-sc0001406-1491911889:18406..20799 | TCONS_00036034-exon-sc0001406-1491911889:18406..20799 | Clytia hemisphaerica | exon |
| TCONS_00036034-exon-sc0001406-1510915933:18406..20799 | TCONS_00036034-exon-sc0001406-1510915933:18406..20799 | Clytia hemisphaerica | exon |
| TCONS_00036034-exon-sc0001406-1575043694:18406..20799 | TCONS_00036034-exon-sc0001406-1575043694:18406..20799 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001406 | supercontig | sc0001406:16377..20799 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000571 | Znf_CCCH |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0046872 | metal ion binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0046872 |
metal ion binding |
Blast
The following BLAST results are available for this feature:
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