TCONS_00036031 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036031
Unique NameTCONS_00036031
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length824

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036031 ID=TCONS_00036031|Name=TCONS_00036031|organism=Clytia hemisphaerica|type=transcript|length=824bp
gNATAtatttaaaaggaaaataatcTATAAATTTTATGTCTAAACTGTCT
CATCAGTGGTAAATATTGAAGCATAAATTCATTATTAAcctaagggaatt
tccccagagaATGAAATAGAGATCTAGGGATGATAACTTCCCTCCGCTTC
CATACCATACCCTGTTTTTATTgggaaaaattcaaataattttaagatga
attaaaagaaaaatttataaagtatttcaaaatcatttttaaacagaatc
tgttaaagttCCTGAAATTAAAAGTAATTTCTGCAAAATCCTTTTCTGtt
aaaagaattcaaatttatttgtaaaaacaTTTGCATGACATATAATGTAA
TAAGACATACTAACTAATTAGTCAATTCAATCAAGTCCCAAAGATAATTA
GCTGTGTAATAGAACGAGTGTTCCTTTTGATTCACTGAGAATGGAGTAGG
AGATTTTCCAGAAACATATCCTTTAACTTTGTCTTTTTGGCAGGTGTAAT
CCCATTTGATTTTCAGTGTATTTGTTAATAATTtgaattttgctttttct
cttTCAATATCAATAGCTTTCTTATTTTTCAGTTCCACTTCCTTTTTGGA
GAGTGATTCTTCATCCAAAGCAACATTATgcattttgtttgtaatttctT
CCAGCACGTTGGTTTCTTTAGATAGTTTTTGCTCTTCAGTTTTTTGGTTT
TCTCGCAAGGTCTTCATTTGATCATTGTACCTCTTGTTGATCTTTGCTGT
TGCTTCTTTAGCACATTCTGAAGATTGGCTACATCCTTGTTTCAGCTTGT
TCATGTGTTCTTCTGAAATCCTNN
Run BLAST on NCBI

protein sequence of TCONS_00036031-protein

>TCONS_00036031-protein ID=TCONS_00036031-protein|Name=TCONS_00036031-protein|organism=Clytia hemisphaerica|type=polypeptide|length=152bp
RISEEHMNKLKQGCSQSSECAKEATAKINKRYNDQMKTLRENQKTEEQKL
SKETNVLEEITNKMHNVALDEESLSKKEVELKNKKAIDIEREKAKFKLLT
NTLKIKWDYTCQKDKVKGYVSGKSPTPFSVNQKEHSFYYTANYLWDLIEL
TN
Run BLAST on NCBI

transcript from alignment at sc0001405:17735..18558

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036031 ID=TCONS_00036031|Name=TCONS_00036031|organism=Clytia hemisphaerica|type=transcript|length=824bp|location=Sequence derived from alignment at sc0001405:17735..18558 (Clytia hemisphaerica)
NNAGGATTTCAGAAGAACACATGAACAAGCTGAAACAAGGATGTAGCCAA
TCTTCAGAATGTGCTAAAGAAGCAACAGCAAAGATCAACAAGAGGTACAA
TGATCAAATGAAGACCTTGCGAGAAAACCAAAAAACTGAAGAGCAAAAAC
TATCTAAAGAAACCAACGTGCTGGAagaaattacaaacaaaatgcATAAT
GTTGCTTTGGATGAAGAATCACTCTCCAAAAAGGAAGTGGAACTGAAAAA
TAAGAAAGCTATTGATATTGAaagagaaaaagcaaaattcaAATTATTAA
CAAATACACTGAAAATCAAATGGGATTACACCTGCCAAAAAGACAAAGTT
AAAGGATATGTTTCTGGAAAATCTCCTACTCCATTCTCAGTGAATCAAAA
GGAACACTCGTTCTATTACACAGCTAATTATCTTTGGGACTTGATTGAAT
TGACTAATTAGTTAGTATGTCTTATTACATTATATGTCATGCAAAtgttt
ttacaaataaatttgaattcttttaaCAGAAAAGGATTTTGCAGAAATTA
CTTTTAATTTCAGGaactttaacagattctgtttaaaaatgattttgaaa
tactttataaatttttcttttaattcatcttaaaattatttgaatttttc
ccAATAAAAACAGGGTATGGTATGGAAGCGGAGGGAAGTTATCATCCCTA
GATCTCTATTTCATtctctggggaaattcccttaggTTAATAATGAATTT
ATGCTTCAATATTTACCACTGATGAGACAGTTTAGACATAAAATTTATAg
attattttccttttaaataTATNc

Coding sequence (CDS) from alignment at sc0001405:17735..18558

>TCONS_00036031 ID=TCONS_00036031|Name=TCONS_00036031|organism=Clytia hemisphaerica|type=CDS|length=459bp|location=Sequence derived from alignment at sc0001405:17735..18558 (Clytia hemisphaerica)
AGGATTTCAGAAGAACACATGAACAAGCTGAAACAAGGATGTAGCCAATC
TTCAGAATGTGCTAAAGAAGCAACAGCAAAGATCAACAAGAGGTACAATG
ATCAAATGAAGACCTTGCGAGAAAACCAAAAAACTGAAGAGCAAAAACTA
TCTAAAGAAACCAACGTGCTGGAagaaattacaaacaaaatgcATAATGT
TGCTTTGGATGAAGAATCACTCTCCAAAAAGGAAGTGGAACTGAAAAATA
AGAAAGCTATTGATATTGAaagagaaaaagcaaaattcaAATTATTAACA
AATACACTGAAAATCAAATGGGATTACACCTGCCAAAAAGACAAAGTTAA
AGGATATGTTTCTGGAAAATCTCCTACTCCATTCTCAGTGAATCAAAAGG
AACACTCGTTCTATTACACAGCTAATTATCTTTGGGACTTGATTGAATTG
ACTAATTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021176XLOC_021176Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036031-proteinTCONS_00036031-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036031-exon-sc0001405-1491911889:17735..18558TCONS_00036031-exon-sc0001405-1491911889:17735..18558Clytia hemisphaericaexon
TCONS_00036031-exon-sc0001405-1510915933:17735..18558TCONS_00036031-exon-sc0001405-1510915933:17735..18558Clytia hemisphaericaexon
TCONS_00036031-exon-sc0001405-1575043694:17735..18558TCONS_00036031-exon-sc0001405-1575043694:17735..18558Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001405supercontigsc0001405:17735..18558 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
10.9606	10.182	4.83343	3.32291	65.0363	52.0073	48.0597	54.4359	26.445	22.9415	16.3646	14.6762	12.9294	11.3156	9.04088	9.80771	17.8419	17.5772	6.43891	8.59879	20.1907	20.8121	25.5974	24.4745	19.6338	23.5479	10.9159	6.8379	13.0618	14.6779
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00036031 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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