TCONS_00036030 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036030
Unique NameTCONS_00036030
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length702

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036030 ID=TCONS_00036030|Name=TCONS_00036030|organism=Clytia hemisphaerica|type=transcript|length=702bp
TATTTATATTAATGACCTACCAGAACATGTTCTATCAAGCATTTTCTTGT
TTGCAGACGACACGAAGATTATAAAGGAAATCAATTCCATTCTTGACTCG
TTAATCTTACAACATGACATTGAAGCACTTGAAAGATGGTCCCGTGAGTG
GCTGTTGAAATTCCACCCCGACAAATGCCACGTTTTAACGATAGGGAAAT
TCGAGAACATAAAGCATGCACACCCGTATCAACTAAATGGAGAGCAACTT
GAACATGTCTTCACAGAAAAAGATCTCGGTGTTTTGATAGANNNNNNNNN
NNNNNNNNNNNNNNNNNNNNATGCCACGTTTTAACGATAGGTAAATTCGA
GAACATAAAGCATGCACACCCGTATCAACTAAATGGAGAGCAACTTGAAC
ATGTCTTCACAGAAAAAGATCTCGTTGTTTTGatagactcaaaatttcat
ttgaagAACATATTGCTAAGCAAACGTAAACAAAGCTAATTCAGAGGATT
TCAAGACCCTAGTCCTCACATATTCCAGACACTTTATACCACCTTTGTAC
GACCACATTTAGAGTATGCTCAATCAGTATGGCAACCAAGATTACGTCGA
TCTATCAACCTGATGCctaatatcaaaacaaactaacAGATATCATTCAG
TCCCATGTTtggaccaatcgtcccaagttcagtcaggcacatcctggcaa
at
Run BLAST on NCBI

protein sequence of TCONS_00036030-protein

>TCONS_00036030-protein ID=TCONS_00036030-protein|Name=TCONS_00036030-protein|organism=Clytia hemisphaerica|type=polypeptide|length=110bp
IYINDLPEHVLSSIFLFADDTKIIKEINSILDSLILQHDIEALERWSREW
LLKFHPDKCHVLTIGKFENIKHAHPYQLNGEQLEHVFTEKDLGVLIXXXX
XXXXXXXATF
Run BLAST on NCBI

transcript from alignment at sc0001405:13447..14148

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036030 ID=TCONS_00036030|Name=TCONS_00036030|organism=Clytia hemisphaerica|type=transcript|length=702bp|location=Sequence derived from alignment at sc0001405:13447..14148 (Clytia hemisphaerica)
atttgccaggatgtgcctgactgaacttgggacgattggtccaAACATGG
GACTGAATGATATCTgttagtttgttttgatattagGCATCAGGTTGATA
GATCGACGTAATCTTGGTTGCCATACTGATTGAGCATACTCTAAATGTGG
TCGTACAAAGGTGGTATAAAGTGTCTGGAATATGTGAGGACTAGGGTCTT
GAAATCCTCTGAATTAGCTTTGTTTACGTTTGCTTAGCAATATGTTcttc
aaatgaaattttgagtctatCAAAACAACGAGATCTTTTTCTGTGAAGAC
ATGTTCAAGTTGCTCTCCATTTAGTTGATACGGGTGTGCATGCTTTATGT
TCTCGAATTTACCTATCGTTAAAACGTGGCATNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNTCTATCAAAACACCGAGATCTTTTTCTGTGAAGACATGT
TCAAGTTGCTCTCCATTTAGTTGATACGGGTGTGCATGCTTTATGTTCTC
GAATTTCCCTATCGTTAAAACGTGGCATTTGTCGGGGTGGAATTTCAACA
GCCACTCACGGGACCATCTTTCAAGTGCTTCAATGTCATGTTGTAAGATT
AACGAGTCAAGAATGGAATTGATTTCCTTTATAATCTTCGTGTCGTCTGC
AAACAAGAAAATGCTTGATAGAACATGTTCTGGTAGGTCATTAATATAAA
TA

Coding sequence (CDS) from alignment at sc0001405:13447..14148

>TCONS_00036030 ID=TCONS_00036030|Name=TCONS_00036030|organism=Clytia hemisphaerica|type=CDS|length=333bp|location=Sequence derived from alignment at sc0001405:13447..14148 (Clytia hemisphaerica)
TTAAAACGTGGCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTATCA
AAACACCGAGATCTTTTTCTGTGAAGACATGTTCAAGTTGCTCTCCATTT
AGTTGATACGGGTGTGCATGCTTTATGTTCTCGAATTTCCCTATCGTTAA
AACGTGGCATTTGTCGGGGTGGAATTTCAACAGCCACTCACGGGACCATC
TTTCAAGTGCTTCAATGTCATGTTGTAAGATTAACGAGTCAAGAATGGAA
TTGATTTCCTTTATAATCTTCGTGTCGTCTGCAAACAAGAAAATGCTTGA
TAGAACATGTTCTGGTAGGTCATTAATATAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021175XLOC_021175Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036030-proteinTCONS_00036030-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036030-exon-sc0001405-1491911889:13447..14148TCONS_00036030-exon-sc0001405-1491911889:13447..14148Clytia hemisphaericaexon
TCONS_00036030-exon-sc0001405-1510915933:13447..14148TCONS_00036030-exon-sc0001405-1510915933:13447..14148Clytia hemisphaericaexon
TCONS_00036030-exon-sc0001405-1575043694:13447..14148TCONS_00036030-exon-sc0001405-1575043694:13447..14148Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001405supercontigsc0001405:13447..14148 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.404783	0.356637	0.739088	1.36939	1.18235	0.34064	0.47661	0.72692	0.768901	0.13181	0.330626	0.470573	0.502626	0.907308	0.407066	0.486594	0.0909744	0.134188	0.730644	0.142284	0.205494	0.332569	0.837395	2.64198	0.625708	0.881536	0.51992	0.389302	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000477RT_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00036030 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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