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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00036027 ID=TCONS_00036027|Name=TCONS_00036027|organism=Clytia hemisphaerica|type=transcript|length=1665bp
gatgtatacaggacgggtatgacctgtgaggcagacttgcgctttctcta
agaaagtgtgaccagtaaaagaataacaaaatttgattggactatgtttt
caaccgttattattaggatctgggaaattcaaactctcagcccataccat
gctatatatttcgccatcagtatatagaataagaaatcatagcatggatc
ttcagacattttcggaaaaatcttccttttattgggctattccacaaaaa
aagtatacaggggtattgacaaacttttttcactaaccccctggaaattt
taaatAACAAATTATCCCCTGGAAGTTATGGGGTAGAACCctctggaaag
tgaaattttgggaaaaagggGTTGGAAAACAACTATTGATGACAGTTTAG
GcgacaatcacaaatatcttcgtttcgttTCGCGTCGCCTGACCGACTcc
tgaaaattgagtaaaattgagTCGGAGAGTCGGTAAATTcgtcaaacttt
ttgttttgatgacgtttcctttgctcaaaaattttattattgctgatttt
tgtgatcgatttctagcgcattcgcagcattttaaaattgtttatcatta
cacgtGCCATTATGTGTCAAAGGTCACAGTGTTTAAACTTCATAATCTGA
AACCACGCAAAACATACACGCGATTGGGCCTCCCGCCGCCTCAGTTAACG
CCCTTTTACCTTTTACCGCCTCACagaccaattttaagaaaacccgaaaa
tttttactaccgaccgaccgacNCTCAGTTAACGCCCTTTTACCTTTTAC
CGCCTCACagaccaattttaagaaaacccgaaaatttttactaccgacca
accgactcactttttagatctaacgaggacgcgaaatgaagatatttgtg
attgccgccctacatttcaacaaaaaatttagTTAACATCTACCATGCTC
TATTTCATTCTCATCTTCAATACGGTTGTCAACTATGGGGTCTTACAGAT
AACACCACATCCAAGCCCATTTTTATTCTTCAAAAGAAAGCCCTTCGTCT
CATGACTTTCAACAACTTTCAATTCCCTTCTCCACTTTTTTTCTGATCTT
AAATTTCTCTTTGACCTAGTCAAATGCCTTAACATTTCTTTTGTTCACAA
ATTTCTGAATAACATAACCTGTTATTCCCCTTGACCTTCTAAATTCTTTT
AACTTTGTCCAGCTTGATGCTGATGGTGAAGATAACCAAGGCACCAGAGG
AGCAAGATTGAAGCTTCTTTTTGTTCCTTCCTACAATACCATTACTTTTG
GTAATAAATCCTTTTCTAAAATCTGCTTAACACAATGGAATAGTATTCAG
CGACCTTATCCAAATATTACTCTGAGCTCATCTGATTTTAGCCTTGTCAA
ATCTCTTGCCTTTACCCAATGTCTTTGGAAATACTGAGCACACCCCTCTA
CACACAGCATACTTTCTCTTTTTATCTTTATCTAAACAAAGTTTATAAAA
TCAACAtactttaatatttttttgcacttttgcATTGTTAGATGAAAAAC
TGGGAGAAAAGCTTAAGAAGATATTGTAGTGATTTACaactttaataaaa
acaaaaagctgGCAATTTAGCTGCACATGATATTAAAACAAGCTATCTTT
GAAATGGGATATGGG Run BLAST on NCBI transcript from alignment at sc0001405:11..1675 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00036027 ID=TCONS_00036027|Name=TCONS_00036027|organism=Clytia hemisphaerica|type=transcript|length=1665bp|location=Sequence derived from alignment at sc0001405:11..1675 (Clytia hemisphaerica)
CCCATATCCCATTTCAAAGATAGCTTGTTTTAATATCATGTGCAGCTAAA
TTGCcagctttttgtttttattaaagttGTAAATCACTACAATATCTTCT
TAAGCTTTTCTCCCAGTTTTTCATCTAACAATgcaaaagtgcaaaaaaat
attaaagtaTGTTGATTTTATAAACTTTGTTTAGATAAAGATAAAAAGAG
AAAGTATGCTGTGTGTAGAGGGGTGTGCTCAGTATTTCCAAAGACATTGG
GTAAAGGCAAGAGATTTGACAAGGCTAAAATCAGATGAGCTCAGAGTAAT
ATTTGGATAAGGTCGCTGAATACTATTCCATTGTGTTAAGCAGATTTTAG
AAAAGGATTTATTACCAAAAGTAATGGTATTGTAGGAAGGAACAAAAAGA
AGCTTCAATCTTGCTCCTCTGGTGCCTTGGTTATCTTCACCATCAGCATC
AAGCTGGACAAAGTTAAAAGAATTTAGAAGGTCAAGGGGAATAACAGGTT
ATGTTATTCAGAAATTTGTGAACAAAAGAAATGTTAAGGCATTTGACTAG
GTCAAAGAGAAATTTAAGATCAGAAAAAAAGTGGAGAAGGGAATTGAAAG
TTGTTGAAAGTCATGAGACGAAGGGCTTTCTTTTGAAGAATAAAAATGGG
CTTGGATGTGGTGTTATCTGTAAGACCCCATAGTTGACAACCGTATTGAA
GATGAGAATGAAATAGAGCATGGTAGATGTTAActaaattttttgttgaa
atgtagggcggcaatcacaaatatcttcatttcgcgtcctcgttagatct
aaaaagtgagtcggttggtcggtagtaaaaattttcgggttttcttaaaa
ttggtctGTGAGGCGGTAAAAGGTAAAAGGGCGTTAACTGAGNgtcggtc
ggtcggtagtaaaaattttcgggttttcttaaaattggtctGTGAGGCGG
TAAAAGGTAAAAGGGCGTTAACTGAGGCGGCGGGAGGCCCAATCGCGTGT
ATGTTTTGCGTGGTTTCAGATTATGAAGTTTAAACACTGTGACCTTTGAC
ACATAATGGCacgtgtaatgataaacaattttaaaatgctgcgaatgcgc
tagaaatcgatcacaaaaatcagcaataataaaatttttgagcaaaggaa
acgtcatcaaaacaaaaagtttgacgAATTTACCGACTCTCCGActcaat
tttactcaattttcaggAGTCGGTCAGGCGACGCGAaacgaaacgaagat
atttgtgattgtcgCCTAAACTGTCATCAATAGTTGTTTTCCAACccctt
tttcccaaaatttcactttccagagGGTTCTACCCCATAACTTCCAGGGG
ATAATTTGTTatttaaaatttccagggggttagtgaaaaaagtttgtcaa
tacccctgtatactttttttgtggaatagcccaataaaaggaagattttt
ccgaaaatgtctgaagatccatgctatgatttcttattctatatactgat
ggcgaaatatatagcatggtatgggctgagagtttgaatttcccagatcc
taataataacggttgaaaacatagtccaatcaaattttgttattctttta
ctggtcacactttcttagagaaagcgcaagtctgcctcacaggtcatacc
cgtcctgtatacatc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00036027-exon-sc0001405-1491911889:11..1675 | TCONS_00036027-exon-sc0001405-1491911889:11..1675 | Clytia hemisphaerica | exon |
| TCONS_00036027-exon-sc0001405-1510915933:11..1675 | TCONS_00036027-exon-sc0001405-1510915933:11..1675 | Clytia hemisphaerica | exon |
| TCONS_00036027-exon-sc0001405-1575043694:11..1675 | TCONS_00036027-exon-sc0001405-1575043694:11..1675 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001405 | supercontig | sc0001405:11..1675 . |
Blast
The following BLAST results are available for this feature:
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