TCONS_00036025 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00036025
Unique Name	TCONS_00036025
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1316

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0001405:39668..43438+

transcript sequence

>TCONS_00036025 ID=TCONS_00036025|Name=TCONS_00036025|organism=Clytia hemisphaerica|type=transcript|length=1316bp
AACAGCAACTAGAAAAAGCTAGACATGATCTTCAACAGATGCAACTAGAA
AAATCAAGTCTTGAGGCTGTTCTAATCAAGGAAAGGGAGCAACATAAAGA
GGCTTTGTGGAAAGTGAAATCAGAATTTCAGAAGATCCAGGAGGAAAGAT
TGCaatggaaagaaaaatatttaaatatctGCATGAGAAATGGCAACACT
acTGAGCCAATTCAACCAGGCAGAAAGCGCAAGCTCCTGACAGCTGAAAA
CGAAAATGAAGAGTTCTACACGAATCTTGCAGCGACCTTTGGGCTGGCTG
GTCAAGAAGAACAACCTGTGCCTCCTATCACAAATCAGCTGTGGGATCCT
GAAACCAAAAGATTCGAGTGCAAAGAATGCAAGGCAACCTTTCGCATGTT
TTCCGAGTTGAAGGCGCACATTGACAAAAATAAGTGTGTCAAGTACACCT
TTCAATGCCCACAATGCAGTGTGGTATTCAGTAATGCAGCTAGCTTCACC
AAACATTTAAAATACCACATCGGTAAGAATATTCGGTGTGACTTTTGTGG
TGAGAAATTCATGCACGATAAAGGACTCCAACGACACATCAAAATGTATC
ACACTGAATTCAGCCAGCGATTCCAGTGCCAATACTGTTCCAAGTTATTT
AATCGTAAGACTTTGCTTGAGAACCACATTCGCAGACATTTCGATTACCG
TCCCTTTAAATGTACTCAATGTGACAAAGCGTTCAAAACCAAGCAATATT
TGACCGGTCACATCAATGGAGTGCATAAGAATGACAAACAGTTTGTATGC
GATAAATGTGATGCTCGTTTCAGTTGGCGTACCACTTGGAAACGTCATGT
ACAAGGTCACATCTTGAAAGCTAATAAGAAAAAGAACAAGAACCGTGCCG
GGACCCTTCAAAACACTGTTGCCGCAGCTACAGCAACGTTAACCGTTCAA
CAACCACAAACTCAAACTGTGGTTACCATGCCCCTTCAAACACAACTCGC
CACTAACGTTGTTCAACTGACTCACGAAGTCCCTCAACTGACCGCCGAAA
ATCTAGCTGCAACTTTGGATCATACTGATCTTACCCAGAATGCTTACGTG
CAGTTAGCTCAAACTGTTCAACAGTTGACGCATCATCAACCGCCTGGACT
GCAGTAATACTACTTCCGAGGTTGCTTTGAAAAGACTTTATTTAAAGGTG
TTGAAAACATTTTGTTGATTATTGCTGCATTTCATATTTCAGTCATAGAT
TTAATATTATTCATTATTTCGCGATTTTTGTGATTGACCTTCTTACATTC
ATCAGCTCCTTTAATG

Run BLAST on NCBI

transcript from alignment at sc0001405:39668..43438+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00036025 ID=TCONS_00036025|Name=TCONS_00036025|organism=Clytia hemisphaerica|type=transcript|length=3771bp|location=Sequence derived from alignment at sc0001405:39668..43438+ (Clytia hemisphaerica)
AACAGCAACTAGAAAAAGTAGGTTACTTTGCTCTTCTTTAGTCTATGGGG
TTCAAGATGGTATTTCAAAACCCTTGCTTTTCCTTTACCTTGTATCATGC
TGCACCACATGCTCTATTATGGAATTTTTACTCCTTGCATAGAGGGTCAA
GCTAGTCTCCAGGAGAATTCCATTGGCAAATGATATTAATTGTTTATTAA
CAGACATTCACCATCCACGACTCTTTCAGGCTAGACATGATCTTCAACAG
ATGCAACTAGAAAAATCAAGTCTTGAGGCTGTTCTAATCAAGGAAAGGGA
GCAACATAAAGAGGTATTATGACATGAATCTCAAATTTAAAgatgttttt
gtttggtttttgcAATCCTCAGATAACTGATTAACCTGGCTGATACAAGG
TTTTGAAAGTATTTATCATAGTTTGACTGCATAATGCTATGTAAGCTGGG
ACCTATTCTTGGTGGTGTGAAATGACATCAGGTGCCAACGATCctaagtt
ttgataaattttgtcAAGGAGTGCCTACGTGTGATTTTGACACACTGAAA
ATTTCCTTCTTTCAGGCTTTGTGGAAAGTGAAATCAGAATTTCAGAAGAT
CCAGGAGGAAAGATTGCaatggaaagaaaaatatttaaatatctGCATGA
GAAATGGCAACACTGTAAGTAATAACTGAACATGAACATTGCAAAAATGT
GTCTACTTATATGAAATTCTCATAAATGGGCAAGCATCTGTTGAAATGAA
ATACAATgtgatctttttttaaaaaactaccCCGTTTTTCCTATGTATTA
TGTAGACTTTTTTCCTGTGGACTATGTACCTgtgacttttcaattttttt
agacTGAGCCAATTCAACCAGGCAGAAAGCGCAAGGTTTGTATTTTGTAC
TTTTCCTATTCTTGtaaaatggagaaaatttttcattacTTTCACTTCTG
GAAGCCCAttgtaaaaaaatcatcaacttCTTCATTTGTTTGATATTTCA
ATCTCTTGTTGACTTGTTTTGAATTATAACcccttcattttcttttgaat
aaTCGTTAACGACTTTCAAGTGAAAACCTTCTCTTTCAATCatcaaaaac
aatagaaattgaGTGTCTGTAAATAAACACTATCATATGTTAGTAAATGG
CCTATAATAACTCCCAATTTTATGAAACCCTTATCCTTTTTAGCTCCTGA
CAGCTGAAAACGAAAATGAAGGTAAccttaaaagttttttcattttgtat
tttacattcTTTTTACTGTAATGGAATCAATACTCGTAAGAtttaatttc
ctaaaatttaatttttattcgacaaaaaattgctaaattttCTGTATAAG
ATTTTTGCAAATCTTATCAaatgcagattttatcaaattcaaaattcagC
GGAGACGCTGATTTTTGTTCTTACTAGAAAATATTATTCAGCAATCCAAT
TGAATGCAATTTGGAGATTGATTTTTCgcatgaacaaaaaaattagcAAT
AATGTCTCATTTAAACTCAAGAAAATTGATATGATTTTAGAAGTATTAAC
AATAATACTATAAATGAATAAATTACTTCTGAATACAAGGGCAAAGTATA
GATATAAAATGAAACTGGAGTGAATAAGTGGAGgtcaattttcagttttt
ttacccgttttttaaatgattttcttaAGAGTGATCTTTCAAGCATCCTT
CTGTTTGTACCATAGAGTTCTACACGAATCTTGCAGCGACCTTTGGGCTG
GCTGGTCAAGAAGAACAACCTGGTAagttaaaaagctctttttctttttc
tatgtcTTAATGTTGTCAGAATGTTACTTTTGTGACGTTTTGTTCTTTCC
CGGTCAAAATTGACCCAAGGGAAACCTGGAGTTTTATTACCGAAATAATA
AGTTCACTTCAGTATTTTTGTGTTTTCCTGGCATTATAGACCTAACATAA
AACCACTGACTAACTCTTTTCAGCTTTGAATTGTACTTCTTCCTTAAATG
ATTGCACAGAACAACAGTGTTTTTCTCCTATAGTAGCTCAATAAAAAATT
CTAGTATGGTGACTTGGCCAGACCTAAGTTGTAAATAATTCAAGGGTATT
GTGACAGAAGTCTGCTGAGACCGTTCCATTTTTCCATCAGCCCTTCTAGA
GCTCAAGGGAAGGTTTCGATGTTCGTTGTGCAAACTTGAATTCTACaacg
gaaaaaatgttttgcacCACTTCAAACAGCAACATGGTAACCGTCCACAT
AAGTGCCCTCACTGTTCAAGAGCCTATGCACACAAAGGAACTCTCCAACA
GCATGTCAATAATGTCCATGAGAATCCTGGAGCTTATATTTGTGGTATCT
GTTCCCGAAAATTCAATCGAAAGGACTATTTAGATAAACACATGCATACA
CACTCTGATGTCAAAGATTTTGACTGTGACTCTTGTGATAAATCCTTTAA
AACAAAATCTCTACTCAATGCTCATATATCTGGCATGCACAAACAAGAGA
AAAAGTATGTCTGTGATGACTGTGGATTTCGAACAAATTGGAATTCAGCA
TTTATCGAACATAAAAAACTTCACACTGGGCAGCCAACAAAATATAAAAC
TTCCAAAGAGGATAACAGCAGCGATTTGGACACTGAAATTGATTAAGGTT
AATCCCTGCTTTGCGAACCTACCTTTTGGTTTCAGGTctctaaacttttg
aaatgtgTAAACTTGAGGTATGGCTGAAGAGCTTGGTGAATCTAAAAGct
actttttttctttcgttttgtaGTGCCTCCTATCACAAATCAGCTGTGGG
ATCCTGAAACCAAAAGATTCGAGTGCAAAGAATGCAAGGCAACCTTTCGC
ATGTTTTCCGAGTTGAAGGCGCACATTGACAAAAATAAGTGTGTCAAGTA
CACCTTTCAATGCCCACAATGCAGTGTGGTATTCAGTAATGCAGCTAGCT
TCACCAAACATTTAAAATACCACATCGGTAAGAATATTCGGTGTGACTTT
TGTGGTGAGAAATTCATGCACGATAAAGGACTCCAACGACACATCAAAAT
GTATCACACTGAATTCAGCCAGCGATTCCAGTGCCAATACTGTTCCAAGT
TATTTAATCGTAAGACTTTGCTTGAGAACCACATTCGCAGACATTTCGAT
TACCGTCCCTTTAAATGTACTCAATGTGACAAAGCGTTCAAAACCAAGCA
ATATTTGACCGGTCACATCAATGGAGTGCATAAGAATGACAAACAGTTTG
TATGCGATAAATGTGATGCTCGTTTCAGTTGGCGTACCACTTGGAAACGT
CATGTACAAGGTCACATCTTGAAAGCTAATAAGAAAAAGAACAAGAACCG
TGCCGGGACCCTTCAAAACACTGTTGCCGCAGCTACAGCAACGTTAACCG
TTCAACAACCACAAACTCAAACTGTGGTTACCATGCCCCTTCAAACACAA
CTCGCCACTAACGTTGTTCAACTGACTCACGAAGTCCCTCAACTGACCGC
CGAAAATCTAGCTGCAACTTTGGATCATACTGATCTTACCCAGAATGCTT
ACGTGCAGTTAGCTCAAACTGTTCAACAGTTGACGCATCATCAACCGCCT
GGACTGCAGTAATACTACTTCCGAGGTTGCTTTGAAAAGACTTTATTTAA
AGGTGTTGAAAACATTTTGTTGATTATTGCTGCATTTCATATTTCAGTCA
TAGATTTAATATTATTCATTATTTCGCGATTTTTGTGATTGACCTTCTTA
CATTCATCAGCTCCTTTAATG

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_021170	XLOC_021170	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0001405	supercontig	sc0001405:39668..43438 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.000547505	0	0	0	0	0	0	0	0	0	0	2.75335e-09	0	0	0	0	3.49337e-05	0	0	0	0	0	0	0	0	0	0

Blast

[Close]

BLAST of TCONS_00036025 vs. Swiss-Prot (Human)
Match: ZN699 (Zinc finger protein 699 OS=Homo sapiens GN=ZNF699 PE=1 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 3.462e-25
Identity = 59/169 (34.91%), Postives = 94/169 (55.62%), Query Frame = 3

Query:  357 KRFECKECKATFRMFSELKAHIDKNKCVKYTFQCPQCSVVFSNAASFTKHLKYHIG-KNIRCDFCGEKFMHDKGLQRHIKMYHTEFSQRFQCQYCSKLFNRKTLLENHIRRHFDYRPFKCTQCDKAFKTKQYLTGHINGVHKNDKQFVCDKCDARFSWRTTWKRHVQGH 860
            K +ECKEC   F   S  +AH+ ++   K  ++C +C   FS ++S T+HL+ H G K   C  CG+ F+    L  HI+ +  E  + ++C+ C K F   + L  H+R H   +P++C +C KAF+   YLT H   +H  +K F C +C   FS  ++++RHV+ H
Sbjct:  445 KPYECKECGKAFSCPSSFRAHV-RDHTGKIQYECKECGKTFSRSSSLTEHLRTHSGEKPYECKECGKAFISSSHLTVHIRTHTGE--KPYECKKCGKAFIYPSALRIHMRTHTGEKPYECKECGKAFRHSSYLTVHAR-MHTGEKPFECLECGKAFSCPSSFRRHVRSH 609

HSP 2 Score: 91.6633 bits (226), Expect = 1.030e-19
Identity = 52/170 (30.59%), Postives = 88/170 (51.76%), Query Frame = 3

Query:  354 TKRFECKECKATFRMFSELKAHIDKNKCVKYTFQCPQCSVVFSNAASFTKHLKYHIGK-NIRCDFCGEKFMHDKGLQRHIKMYHTEFSQRFQCQYCSKLFNRKTLLENHIRRHFDYRPFKCTQCDKAFKTKQYLTGHINGVHKNDKQFVCDKCDARFSWRTTWKRHVQGH 860
            +K ++CKEC   F   +  K H+ K    +  ++C +C+  FS ++ F  H+K HIGK N  C  CG+ F     L  H +++  +  + ++C+ C K F+  + L  H R H   +P++C +C KAF +  +L  HI  +H  +K + C +C   FS  +    H + H
Sbjct:  220 SKPYQCKECGKAFHFLACFKKHM-KTPTEEKPYECKECTKAFSCSSFFRAHMKIHIGKTNYECKECGKGFSCSSSLTEHKRIHSGD--KPYECKECGKAFSCSSSLSKHKRIHSGDKPYECKECGKAFSSSSHLIIHIR-IHTGEKPYECKECGKAFSESSKLTVHGRTH 385

HSP 3 Score: 82.8037 bits (203), Expect = 8.367e-17
Identity = 49/169 (28.99%), Postives = 84/169 (49.70%), Query Frame = 3

Query:  357 KRFECKECKATFRMFSELKAHIDKNKCVKYTFQCPQCSVVFSNAASFTKHLKYHI-GKNIRCDFCGEKFMHDKGLQRHIKMYHTEFSQRFQCQYCSKLFNRKTLLENHIRRHFDYRPFKCTQCDKAFKTKQYLTGHINGVHKNDKQFVCDKCDARFSWRTTWKRHVQGH 860
            K ++CKEC   +   S L  H+ K+   K  ++C +C   F    S   H+K     K   C  CG+ F      + H++ +  +   +++C+ C K F+R + L  H+R H   +P++C +C KAF +  +LT HI   H  +K + C KC   F + +  + H++ H
Sbjct:  389 KPYKCKECGKAYNCPSSLSIHMRKHTGEK-PYECLECGKAFYLPTSLNTHVKNQSREKPYECKECGKAFSCPSSFRAHVRDHTGKI--QYECKECGKTFSRSSSLTEHLRTHSGEKPYECKECGKAFISSSHLTVHIR-THTGEKPYECKKCGKAFIYPSALRIHMRTH 553

HSP 4 Score: 82.8037 bits (203), Expect = 8.749e-17
Identity = 52/165 (31.52%), Postives = 82/165 (49.70%), Query Frame = 3

Query:  363 FECKECKATFRMFSELKAHIDKNKCVKYTFQCPQCSVVFSNAASFTKHLKYHIG-KNIRCDFCGEKFMHDKGLQRHIKMYHTEFSQRFQCQYCSKLFNRKTLLENHIRRHFDYRPFKCTQCDKAFKTKQYLTGHINGVHKNDKQFVCDKCDARFSWRTTWKRHVQ 854
            +ECKEC   F   S L  H   +   K  ++C +C   FS ++S +KH + H G K   C  CG+ F     L  HI+++  E  + ++C+ C K F+  + L  H R H   +P+KC +C KA+     L+ H+   H  +K + C +C   F   T+   HV+
Sbjct:  279 YECKECGKGFSCSSSLTEHKRIHSGDK-PYECKECGKAFSCSSSLSKHKRIHSGDKPYECKECGKAFSSSSHLIIHIRIHTGE--KPYECKECGKAFSESSKLTVHGRTHTGEKPYKCKECGKAYNCPSSLSIHMR-KHTGEKPYECLECGKAFYLPTSLNTHVK 439

The following BLAST results are available for this feature:

BLAST of TCONS_00036025 vs. Swiss-Prot (Human)

BLAST of TCONS_00036025 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
ZN699	3.462e-25	34.91	Zinc finger protein 699 OS=Homo sapiens GN=ZNF699 ...	[more]

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TCONS_00036025 (transcript) - C. hemisphaerica