TCONS_00036020 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00036020
Unique Name	TCONS_00036020
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1474

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0001405:22931..27726+

transcript sequence

>TCONS_00036020 ID=TCONS_00036020|Name=TCONS_00036020|organism=Clytia hemisphaerica|type=transcript|length=1474bp
CCTACCAAATACCTCTGTTTGGAATATCTTTTACAATGATTTCTGGGGAC
GTACCCTGATTGATTCCAAAAGTCACAAATCCTTCAGACCAATATGTACT
CTGACATTCAGATTTGATTATATGGTATTTGGATTGAACCCATTTGGTTA
TCACTTGGTCAATGTTTTGCTCCACATATTTGTCTGCAATGTGCTTTTTC
AAGTGTTACGAGATATTATTCTATTTGACACAAAATTATCGTTGATGGCA
ACTATACTGTTTGCAACACACCCTGTTCATGTAGAAGCtGTAACAGGTGT
TGTTGGAAGAGCTGATATGTTGTCTTGTCTATTCGTACTACTTGCATTCA
AGGCTTACCACAAATATCTTGTGACAACTCAACAGGATGTTTTTTTCACT
AGCGACCTTTTGGTAGTTGTTGCATATGGTACATCCACATTCTTCATCAA
AGAGCATTCTGTCATGATATTCTTTGTATTGATTGGTTACGATGCTCTAT
GTAATAAACAATACATTGCAAGCATGTTAACTGATGGAATTCATAGCAGC
ACAAAACAAATGCAAACAAGGTTTTTCAAAAGAGTTGGATTTCTATTGGT
TTGGTTTTTGGCGTTGTTTCGATACCGTATGTACCCGATGAACTACACTT
TACCAAAGTTCAAACTAGAAGACAACCCTGCATCATTCTCACCACATCTC
CAAACACGCATCTTAACTTATCTCTACTTACTCATCTTCAACCTTAAACT
TCTCTTATCACCCAATGTTCTGTGCTACGATTGGCAGATTGGAAGTATAC
CACTGGTTGAGACACTATCGGATACAAGAAACTTGGAAACATTGTTCGGC
CTTTCATTTTTTGTTATCACTGGTGTTAATCTTTTGACTTGGGTTTTTAA
AAGGCCATCAAAAGAGGATTCGTATGACAACCATGCATTGGCGATTGGTC
TCTTCTTTCTGGTGATTTCTTTTCTGCCTGCTTCTAATTTCTTCATTCGT
GTTGGCTTTGTAGTTGCTGAAAGGATTCTTTACATACCAAGCGTTGGTTA
CACTATCTTGGTTGTGGTTGGATTGAATCGACTATGTCAGAAATTCCCTA
AATTTAAAAACACCTTCTACTTTATGTTTGGGATGGCAGTCGTTCTCTTC
ACCTCCAAAACGATTTCTTACAATCGAGTCTGGAAAACAAGAGAGACACT
GTTTAGATCAGGCGTCGACACCCTACCACACAATGCAAAAGCTCACTACA
ACTATGCTAATTTTCTCAAAGACGAAAATCGAACTGAACAAGCTGTttat
cattataaaaaggcGGTCGAGTAAGTTAAAGTTGAAAGGGATCGAACGTA
ATTTATTTGCCTGCcaccttttgataaaattttgaagcaaaatcaATTAG
ATAGAGGTATTACCATCCAAAAGATGCAAGCAATCATTTTGCTTTTCTGT
TAAGAGGTTGATGATGTTTCTTGA

Run BLAST on NCBI

transcript from alignment at sc0001405:22931..27726+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00036020 ID=TCONS_00036020|Name=TCONS_00036020|organism=Clytia hemisphaerica|type=transcript|length=4796bp|location=Sequence derived from alignment at sc0001405:22931..27726+ (Clytia hemisphaerica)
CCTACCAAATACCTCTGTTTGGAATATCTTTTACAATGATTTCTGGGGAC
GTACCCTGATTGATTCCAAAAGTCACAAATCCTTCAGACCAATATGTACT
CTGACATTCAGATTTGATTATATGGTATTTGGATTGAACCCATTTGGTTA
TCACTTGGTCAATGTTTTGCTCCACATATTTGTCTGCAATGTGCTTTTTC
AAGTGTTACGAGATATTATTCTATTTGACACAAAATTATCGTTGATGGCA
ACTATACTGTTTGCAACACACCCTGTTCATGTAGAAGCtgtgagtttttt
atttttttacctttttattcAACGTAGtcaaaaaacgtttttaaaaccCT
CTAAAAGTTAGCAATCACTGTCTAAAATCTTTCACAAAAGTTTTGACGTT
CGGAAACCCAACCACCCTATTTGGACCCGTCCTTTTAGAAGACTGTTTTA
TGACTCATATTGATGATTTTTAACCATATTCTAGGTAACAGGTGTTGTTG
GAAGAGCTGATATGTTGTCTTGTCTATTCGTACTACTTGCATTCAAGGCT
TACCACAAGTAAAATATatattcattaaaattttataaaactcTTCAGTG
ATTGCATTTCTATAATTAAAACTTAAACATTTGGATGAGTCACaggcaag
aaacaacaaaaatttatttattgatgATATTTATTGATACTCTATGGTAG
AGCATCTTCAGATCTATCATAACTTGGCATATAACATCTAGCATTTACAA
ATTCAGACATTTGattaaataatttaaatttatcGCGTTCATATATTTAT
ATAATTCCTACCTGTTATGaaccaaaattaaaacataAGATAACTGGAAT
ACATAAATAAAACTCTAATCCTTTCTTTTTATAGATATCTTGTGACAACT
CAACAGGTAAATATACTCTTCctattcattttcagaaaaacaaaaacaaa
aggtgtttattcatttttttaattttatgaaatttgcaattaaaaatgaa
gataaaacttGCCGTTTCAAAATTACCCAAAAAGCCAAACAGTTATATTT
ATTCTTAACTAATATATTGATTACATTTCAGGATGTTTTTTTCACTAGCG
ACCTTTTGGTAGTTGTTGCATATGGTACATCCACATTCTTCATCAAAGAG
CATTCTGTCATGATATTCTTTGTATTGATTGGTTACGATGCTCTATGTAA
TAAACAATACATTGCAAGGTATTGCCATGATATTACTTTAATAGAGTTTT
ATATTTGGGAAATAAATGTtagaaattttataattttgctCATTATTTTG
AGCGTTCTTTTCAGCATCGAgattccgcaaaatttaataccacaattttt
aaatcaatgGTCTGTCTGGTCCCTGTCTTATTTCCCTGGATGGTGGATGA
GCATATTCGGGTGAAAGCGTGCTCACCCCTTGCAGGTCACTTCCCGTAAG
CCCAGGCAAATCGACCACATAATGACTCGTTCAACGGTAATCGTCAGTTG
TACAAAGTTTCTCGATTCTGGTTGGTTTAGAGTACCGTTACCTGCACTAT
TACCACTCTTTGCATTCTACGGCAGGGGTCACTTTTGTCAACTTGTCACT
TTTGTCACTTTGAAagacaaagaaattttgcaatgCAATATCTTCTCttg
atgaaaacaaagaaacatcGCACAGCAATGCCTTCTTTTagtcaaaagaa
caaaaagaggTTTTCGAATCGAATTTTTGCTAAGATATAAAAagataaga
aatattttcatagacgattacctcggaatcgtatggtTTGGGGTGCAATT
AACGATGAAtgactcgtaacaaaggagaaaataccttAATTTtctactcg
tgattaatcgttaattgcacaccaaaccatacgattactagttcTAATTA
AAATCACCCAAGATCACGGGTAGAACCAGCCCTATGGAATGATAtgaatt
tcataaaaactttttaaaaaacgataaaaaagttaaattttcgTAGGTTC
TATCTTCTGATTTCATTGAGAATAACAGAAGGGGACATCAGTCTAACTTA
TTCAGCTatttaatgattttattttatattgatAGCATGTTAACTGATGG
AATTCATAGCAGCACAAAACAAATGCAAACAAGGTTTTTCAAAAGAGTTG
GATTTCTATTGGTTTGGGTGAGattttagtttaaaaaaaaaactcattta
aAGCAAATTTTTAGGGATTGACACCTTTAGCTATTATTTATGCTACTTTT
AGACCGTCAGGTTGGTTCAATGAGCATTGGTGAACTTCCTATAATTCTTT
TTCACCTACCTCGAGGTTTACTTCATAAACACCAGCAATAAATAATCTTT
ATTATCATTTATTTAGTTTTTGGCGTTGTTTCGATACCGTATGTACCCGA
TGAACTACACTTTACCAAAGTTCAAACTAGAAGACAACCCTGCATCATTC
TCACCACATCTCCAAACACGCATCTTAACTTATCTCTACTTACTCATCTT
CAACCTTAAACTTCTCTTATCACCCAATGTTCTGTGCTACGATTGGCAGA
TTGGAAGTATACCACTGGTTGAGACACTATCGGATACAAGAAACTTGGAA
ACATTGTTCGGCCTTTCATTTTTTGTTATCACTGGTGTTAATCTTTTGAC
TTGGGTTTTTAAAAGGCCATCAAAAGAGGTATTATGTAAACCTNCAAAAG
AGGTATACACATTATATGAAATGCTAGAATGTTTCTCGTTGTATTTCATG
GTAATTTCACGGGTGGCATAGTTCACACCACTACTTGGTGGTACTAACTG
GGTTAAAGCCCTGAAACTCTTCTTGTTCTCTTCTCTCGCAACCCAACAGT
TTTTAAATACTCCAAATTGACTCAAATTCACCTCGTCCTGTCCAAAGGAC
AATACTGTATACTGTCAATTAGATCAATTTGAAAGTGGGTGATAAAACAA
CCCAGTTCTAtcctgaaggtcgggaaaattataGTTGATAAAGAATTTAC
CTAGGGTAGGGGTTTATTAGGGGTTGTAACCCCTTTCTGTTCTATGAAAC
GttacattttgaagtttttgttaCATTTCCCTTTATTCATACATAACTTA
GCTTTTTAATGTAAAATTCTTCAATCCTAGGTTGGGAAAGAAACAGAAGT
TTACAACTGCATACTGCATAGTTTGtatcaaataatttttcttcGTTTAG
GATTCGTATGACAACCATGCATTGGCGATTGGTCTCTTCTTTCTGGTGAT
TTCTTTTCTGCCTGCTTCTAATTTCTTCATTCGTGTTGGCTTTGTAGTTG
CTGAAAGGATTCTTTACATACCAAGGTAATACACAGTCGGTTTTGTAACA
TGATTGGAACACATGTGAAAAGTACAAGATTTGCATTGGACTTCTTTTAA
GCCTGCTTTGtcctttaaaagatttttacctCATTTTGAGTTTTTACTTT
ATTCATATTGCACAATTCTTAGTAAAGTAAGTCTACGACCGCAGTCGCAG
GCGACCTggaggctcctctttcgatggCTATCTACCCGGGAGGGCGCCGC
TCTTTCTCCCTTGATTGCTCCCTTGATTGCTCCCTTGATTGCTCCATTAA
CTCTTGAtatttctcttaattgctgagcatcaagtatCAAGTACCAATac
gggaatctttggtatgacctgcctgagggttgaacccacaactaGCCGGA
TGCACTACACTACGACCGCACAATTATTAAGTGATCTACTCGTCAAATAA
AcgctgtattataaatattctTGTTTTTAGCGTTGGTTACACTATCTTGG
TTGTGGTTGGATTGAATCGACTATGTCAGAAATTCCCTAAATTTAAAAAC
ACCTTCTACTTTATGTTTGGGATGGCAGTCGTTCTCTTCACCTCCAAAAC
GATTTCTTACAATCGAGTCTGGAAAACAAGAGAGACACTGTTTAGGTAGG
TATGACTAAATCAATagtcataaaaaattttcattcaatgGGCAAAGTTG
TTTAAATAGAATATAAACAGTGATGCCGAAGTATGTAGTGACTTTACGNG
TTTCATTCAATAGGCAAAGTTGTTTAAATAGAATATAAACAGTGATGCCG
AAGTATGTAATGACTTTACGTACCTTTAAGAAGTGGTGCAAataaatggg
ctattccataaAATATTCTATACAAGGGGGAGGATggaccttttcaagtc
aaaaaggaATTGTAGATACCCCTGGAAAAAAATCCTCGGAAAACTTCTTT
TCGTACCTTATTGTAATGGTGgatgaactaaaatcagtctatttttcatt
tcttgaaagTTTTGATTGTTGGGGCCTGGAGACGAGTTTTATGCCAAAAG
GAGGAGGCTAAAGATTTGGGACAacctgaataaaaaaaatcattgttaaA
TTAAGGTATACATCGAGACAATACGTTAAGAAAGAATTTAAGGCCAACTA
ATAAGTAAATTTCATCCTCAgcccaaatttcaaaattcatcattcttata
aaaacttgtTATGATACCTATTTTACAGATCAGGCGTCGACACCCTACCA
CACAATGCAAAAGCTCACTACAACTATGCTAATTTTCTCAAAGACGAAAA
TCGAACTGAACAAGCTGTttatcattataaaaaggcGGTCGAGTAAGTTA
AAGTTGAAAGGGATCGAACGTAATTTATTTGCCTGCcaccttttgataaa
attttgaagcaaaatcaATTAGATAGAGGTATTACCATCCAAAAGATGCA
AGCAATCATTTTGCTTTTCTGTTAAGAGGTTGATGATGTTTCTTGA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_021169	XLOC_021169	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0001405	supercontig	sc0001405:22931..27726 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.7778	8.59439	5.66497	4.37269	2.18672	1.17471	0.44396	1.95516	1.40051	1.7474	0.699487	1.92575	1.40115	1.93763	1.96748	3.05964	4.46277	4.75237	0.463135	2.06518	1.80072	2.28153	4.53035	4.45477	0.781535	0.548818	2.34063	2.18319	2.9798	3.29798

Blast

[Close]

BLAST of TCONS_00036020 vs. Swiss-Prot (Human)
Match: TMTC1 (Transmembrane and TPR repeat-containing protein 1 OS=Homo sapiens GN=TMTC1 PE=1 SV=3)

HSP 1 Score: 287.345 bits (734), Expect = 1.396e-86
Identity = 190/457 (41.58%), Postives = 262/457 (57.33%), Query Frame = 2

Query:   20 WNIFYNDFWGRTLIDSKSHKSFRPICTLTFRFDYMVFGLNPFGYHLVNVLLHIFVCNVLFQVLRDIILFDTKLSLMATILFATHPVHVEAVTGVVGRADMLSCLFVLLAFKAYHKYLVTTQQDVFFTSDL-----LVVVAYGTSTFFIKEHSVMIFFVLIGYD--ALCNKQYIASMLTDGIHSSTKQMQTRFFKRVGFLLVWFLALFRYRMYPMNYTLPK--------FKLEDNPAS----FSPHL---QTRIXXXXXXXXXXXXXXXSPNVLCYDWQIGSIPLVETLSDTRNLETLFGLSFFVITGVNLLTWVFKRPSKEDSYDNHALAIGLFFLVISFLPASNFFIRVGFVVAERILYIPSVGYTILVVVGLNRLCQKFPKFKNTFYFMFG-MAVVLFTSKTISYNRVWKTRETLFRSGVDTLPHNAKAHYNYANFLKDENRTEQAVYHYKKAVE 1321
            W IF NDFWG+ + ++ SHKS+RP+C LTF+ +  + G+NPF +H VN++LH  V  VL       +  +  L+ +  +LFA HP+H EAV G+VGRAD+L+CL  LLAF +Y++ L        F S +     L+ +  GT    +KE  + +F V + YD  +L NKQ           SS   +  R  ++ G      L    +R        P           L   P S     SP       R LTY YLL FN+ LLL+P  LCYDWQ+GSIPLVET+ D RNL T+F      +  ++ L   FKR       ++  + +GL FLV  F+PASN F RVGFVVAER+LY+PS+GY IL V GL++LC    +   T   +   + ++LF+ KT+  N +W +RE+LFRSGV TLPHNAK HYNYANFLKD+ R ++A+YHY+ A++
Sbjct:   71 WGIFTNDFWGKGMAENTSHKSYRPLCVLTFKLNIFLTGMNPFYFHAVNIILHCLVTLVLMYTCDKTVFKNRGLAFVTALLFAVHPIHTEAVAGIVGRADVLACLLFLLAFLSYNRSLDQGCVGGSFPSTVSPFFLLLSLFLGTCAMLVKETGITVFGVCLVYDLFSLSNKQ---------DKSSNGALCPRSPQQPGSPQPSSLPGHPHRENGKQQRFPHKGAWGGCHSPLPPEPKSSGFPVSPRAVWSMMRFLTYSYLLAFNVWLLLAPVTLCYDWQVGSIPLVETIWDMRNLATIFLAVVMALLSLHCLA-AFKR------LEHKEVLVGLLFLVFPFIPASNLFFRVGFVVAERVLYMPSMGYCILFVHGLSKLCTWLNRCGATTLIVSTVLLLLLFSWKTVKQNEIWLSRESLFRSGVQTLPHNAKVHYNYANFLKDQGRNKEAIYHYRTALK 511

The following BLAST results are available for this feature:

BLAST of TCONS_00036020 vs. Swiss-Prot (Human)

BLAST of TCONS_00036020 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
TMTC1	1.396e-86	41.58	Transmembrane and TPR repeat-containing protein 1 ...	[more]

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TCONS_00036020 (transcript) - C. hemisphaerica