TCONS_00036015 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036015
Unique NameTCONS_00036015
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length959

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036015 ID=TCONS_00036015|Name=TCONS_00036015|organism=Clytia hemisphaerica|type=transcript|length=959bp
atattttgttcttgtatttctttttaagatatttaaaaaatggcaaaaag
taaatttgaatatgtaaagaaatttgaagaaaatgatgTGTTGGATAGTT
GTGCGCATTGATGGTAGGAGTTTTCATCGATTTTCTGAGGATCATTGCTA
CTCAAAACCTAATGATATAAGGGGTCTTTCATTGATGAATAAATGTGCTG
AAGAAGTGATGCAACAATTTCATGACATTATCTTATGGTGAAAGTGATGA
ATACAGTTTTATTTTCAAGAGGAAAACAACACAATTTAGTCGAAGGAAAA
GTAAACTAATGACGAATATTGTGTCATTGTTCTCTTCCTGTTTTGTTTTC
CATTGGCAGAAATTCTTCCCGGACACTAAACTTCAATATCCACCAATGTT
TGACTCAAGAGTCGCTGTATACCCTGCTCTTGAGAATATTCGGGATTACT
TAAATTGGAGACAAGCCGATTGCCACATTAATAATCTTTATAATACTTGT
TTTTGGACGTTAGTCAACAAGAGTGGTTTAACCACGACAgaagctgaaaa
aaaattaaaaggaacACTGTCAGGAGATAAAAATGAAATGCTGTTCTCAG
AGTTTGGTATAAATTACAATGAGGAGCCTGATTCTTTTAAGAAGGGATCT
GTGTTGATAAGAGAGCTTTATGAGGATGAAGTTGTTAAAAAAACAAAGGA
TGGTGAATTGACAAATGAAACAACAAAACGTACAAGGAGCAAAGTTGTAC
TTCTTCATCAAGACATAATAGGAAATTCTTTTTGGAAACAACATCCtaat
attttataaaactttttctctttttataaATAATCTTTCACAAAAAGCAT
tttatataagatttttttttatattgggCTTGgttattaattatttttcc
tCACTGTAATAACATGAGAATATGGAAATGCAGattatcaaaatgaaaaa
ttaaaacct
Run BLAST on NCBI

transcript from alignment at sc0001405:20650..21608+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036015 ID=TCONS_00036015|Name=TCONS_00036015|organism=Clytia hemisphaerica|type=transcript|length=959bp|location=Sequence derived from alignment at sc0001405:20650..21608+ (Clytia hemisphaerica)
atattttgttcttgtatttctttttaagatatttaaaaaatggcaaaaag
taaatttgaatatgtaaagaaatttgaagaaaatgatgTGTTGGATAGTT
GTGCGCATTGATGGTAGGAGTTTTCATCGATTTTCTGAGGATCATTGCTA
CTCAAAACCTAATGATATAAGGGGTCTTTCATTGATGAATAAATGTGCTG
AAGAAGTGATGCAACAATTTCATGACATTATCTTATGGTGAAAGTGATGA
ATACAGTTTTATTTTCAAGAGGAAAACAACACAATTTAGTCGAAGGAAAA
GTAAACTAATGACGAATATTGTGTCATTGTTCTCTTCCTGTTTTGTTTTC
CATTGGCAGAAATTCTTCCCGGACACTAAACTTCAATATCCACCAATGTT
TGACTCAAGAGTCGCTGTATACCCTGCTCTTGAGAATATTCGGGATTACT
TAAATTGGAGACAAGCCGATTGCCACATTAATAATCTTTATAATACTTGT
TTTTGGACGTTAGTCAACAAGAGTGGTTTAACCACGACAgaagctgaaaa
aaaattaaaaggaacACTGTCAGGAGATAAAAATGAAATGCTGTTCTCAG
AGTTTGGTATAAATTACAATGAGGAGCCTGATTCTTTTAAGAAGGGATCT
GTGTTGATAAGAGAGCTTTATGAGGATGAAGTTGTTAAAAAAACAAAGGA
TGGTGAATTGACAAATGAAACAACAAAACGTACAAGGAGCAAAGTTGTAC
TTCTTCATCAAGACATAATAGGAAATTCTTTTTGGAAACAACATCCtaat
attttataaaactttttctctttttataaATAATCTTTCACAAAAAGCAT
tttatataagatttttttttatattgggCTTGgttattaattatttttcc
tCACTGTAATAACATGAGAATATGGAAATGCAGattatcaaaatgaaaaa
ttaaaacct
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021169XLOC_021169Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036015-exon-sc0001405-1491911889:20650..21608TCONS_00036015-exon-sc0001405-1491911889:20650..21608Clytia hemisphaericaexon
TCONS_00036015-exon-sc0001405-1510915933:20650..21608TCONS_00036015-exon-sc0001405-1510915933:20650..21608Clytia hemisphaericaexon
TCONS_00036015-exon-sc0001405-1575043694:20650..21608TCONS_00036015-exon-sc0001405-1575043694:20650..21608Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001405supercontigsc0001405:20650..21608 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
23.8317	23.7899	5.71615	2.95881	36.6164	36.0928	29.0094	36.6665	16.7244	13.1083	14.9513	9.8543	11.3152	9.27355	4.96542	6.04799	3.88793	5.49012	2.96681	2.52573	5.3772	4.56727	42.9417	35.8462	16.5568	26.8335	4.83264	5.09071	17.4205	18.3368
Blast
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BLAST of TCONS_00036015 vs. Swiss-Prot (Human)
Match: THG1 (Probable tRNA(His) guanylyltransferase OS=Homo sapiens GN=THG1L PE=1 SV=2)

HSP 1 Score: 236.498 bits (602), Expect = 4.554e-81
Identity = 108/198 (54.55%), Postives = 146/198 (73.74%), Query Frame = 3 
Query:  222 MTLSYGESDEYSFIFKRKTTQFSRRKSKLMTNIVSLFSSCFVFHWQKFFPDTKLQYPPMFDSRVAVYPALENIRDYLNWRQADCHINNLYNTCFWTLVNKSGLTTTEAEKKLKGTLSGDKNEMLFSEFGINYNEEPDSFKKGSVLIRELYEDEVVKKTK---DGELTNETTKRTRSKVVLLHQDIIGNSFWKQHPNIL 806
            + ++YG+SDEYSF+FKRKT  F RR SK MT++ S F+S +VF+W+ +F D  L YPP FD RV VYP+ + ++DYL+WRQADCHINNLYNT FW L+ +SGLT  +A+ +L+GTL+ DKNE+LFSEF INYN E   ++KG+VLI +  ++ + K+ K   + E       RTR+K V LH DIIG++FWK+HP IL
Sbjct:   97 IVIAYGQSDEYSFVFKRKTNWFKRRASKFMTHVASQFASSYVFYWRDYFEDQPLLYPPGFDGRVVVYPSNQTLKDYLSWRQADCHINNLYNTVFWALIQQSGLTPVQAQGRLQGTLAADKNEILFSEFNINYNNELPMYRKGTVLIWQKVDEVMTKEIKLPTEMEGKKMAVTRTRTKPVPLHCDIIGDAFWKEHPEIL 294

HSP 2 Score: 75.8702 bits (185), Expect = 4.554e-81
Identity = 29/49 (59.18%), Postives = 40/49 (81.63%), Query Frame = 2 
Query:   89 CWIVVRIDGRSFHRFSEDHCYSKPNDIRGLSLMNKCAEEVMQQFHDIIL 235
            CW+VVR+DGR+FHRF+E H ++KPND R L LM KCA+ VM++  DI++
Sbjct:   51 CWVVVRLDGRNFHRFAEKHNFAKPNDSRALQLMTKCAQTVMEELEDIVI 99

HSP 3 Score: 29.261 bits (64), Expect = 4.554e-81
Identity = 15/25 (60.00%), Postives = 17/25 (68.00%), Query Frame = 1 
Query:   40 MAKSKFEYVKKFEENDVLDSCAH*W 114
            MAKSKFEYV+ FE +D     AH W
Sbjct:   30 MAKSKFEYVRDFEADDT--CLAHCW 52
The following BLAST results are available for this feature:
BLAST of TCONS_00036015 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
THG14.554e-8154.55Probable tRNA(His) guanylyltransferase OS=Homo sap... [more]
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