TCONS_00036014 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00036014
Unique Name	TCONS_00036014
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1785

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0001405:20621..27726+

transcript sequence

>TCONS_00036014 ID=TCONS_00036014|Name=TCONS_00036014|organism=Clytia hemisphaerica|type=transcript|length=1785bp
GTATTCTTTATCAATGCTAggttttcttaatattttgttcttgtatttct
ttttaagatatttaaaaaatggcaaaaagtaaatttgaatatgtaaagaa
atttgaagaaaatgatgTGTTGGATAGTTGTGCGCATTGATGCAATGATT
AAACTATCAGATGACAAACAATTTAATAACACTACTAATAACATTGGTTT
GTTTCATTTGCTTCTACAACTCGTTGGAAAATGGATTCGTTCATGATGAC
ATATTCGCCATTGTCAACAATAAAGACATCCTACCAAATACCTCTGTTTG
GAATATCTTTTACAATGATTTCTGGGGACGTACCCTGATTGATTCCAAAA
GTCACAAATCCTTCAGACCAATATGTACTCTGACATTCAGATTTGATTAT
ATGGTATTTGGATTGAACCCATTNTTATGTACTCTGACATTCAGATTTGA
TTATATGGTATTTGGATTGAACCCATTTGGTTATCACTTGGTCAATGTTT
TGCTCCACATACTTGTCTGCAATGTGCTTTTCCAAGTGTTACGAGatatt
gttttatttgataCAAAATTATCATTGATGGCAACTATACTGTTTGCAAC
ACACCCTGTTCATGTAGAAgctGTCACAGGTGTTGTTGGAAGAGCTGATG
TGCTGTCTTGTCTATTCGTACTACTTGCATTCAAGGCTTACCACAAGATG
TTTTTTTCACTAGCGACCTTTTGGTAGTTGTTGCATATGGTACATCCACA
TTCTTCATCAAAGAGCATTCTGTCATGATATTCTTTGTATTGATTGGTTA
CGATGCTCTATGTAATAAACAATACATTGCAAGCATGTTAACTGATGGAA
TTCATAGCAGCACAAAACAAATGCAAACAAGGTTTTTCAAAAGAGTTGGA
TTTCTATTGGTTTGGTTTTTGGCGTTGTTTCGATACCGTATGTACCCGAT
GAACTACACTTTACCAAAGTTCAAACTAGAAGACAACCCTGCATCATTCT
CACCACATCTCCAAACACGCATCTTAACTTATCTCTACTTACTCATCTTC
AACCTTAAACTTCTCTTATCACCCAATGTTCTGTGCTACGATTGGCAGAT
TGGAAGTATACCACTGGTTGAGACACTATCGGATACAAGAAACTTGGAAA
CATTGTTCGGCCTTTCATTTTTTGTTATCACTGGTGTTAATCTTTTGACT
TGGGTTTTTAAAAGGCCATCAAAAGAGGATTCGTATGACAACCATGCATT
GGCGATTGGTCTCTTCTTTCTGGTGATTTCTTTTCTGCCTGCTTCTAATT
TCTTCATTCGTGTTGGCTTTGTAGTTGCTGAAAGGATTCTTTACATACCA
AGCGTTGGTTACACTATCTTGGTTGTGGTTGGATTGAATCGACTATGTCA
GAAATTCCCTAAATTTAAAAACACCTTCTACTTTATGTTTGGGATGGCAG
TCGTTCTCTTCACCTCCAAAACGATTTCTTACAATCGAGTCTGGAAAACA
AGAGAGACACTGTTTAGATCAGGCGTCGACACCCTACCACACAATGCAAA
AGCTCACTACAACTATGCTAATTTTCTCAAAGACGAAAATCGAACTGAAC
AAGCTGTttatcattataaaaaggcGGTCGAGTAAGTTAAAGTTGAAAGG
GATCGAACGTAATTTATTTGCCTGCcaccttttgataaaattttgaagca
aaatcaATTAGATAGAGGTATTACCATCCAAAAGATGCAAGCAATCATTT
TGCTTTTCTGTTAAGAGGTTGATGATGTTTCTTGA

Run BLAST on NCBI

transcript from alignment at sc0001405:20621..27726+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00036014 ID=TCONS_00036014|Name=TCONS_00036014|organism=Clytia hemisphaerica|type=transcript|length=7106bp|location=Sequence derived from alignment at sc0001405:20621..27726+ (Clytia hemisphaerica)
GTATTCTTTATCAATGCTAggttttcttaatattttgttcttgtatttct
ttttaagatatttaaaaaatggcaaaaagtaaatttgaatatgtaaagaa
atttgaagaaaatgatgTGTTGGATAGTTGTGCGCATTGATGGTAGGAGT
TTTCATCGATTTTCTGAGGATCATTGCTACTCAAAACCTAATGATATAAG
GGGTCTTTCATTGATGAATAAATGTGCTGAAGAAGTGATGCAACAATTTC
ATGACATTATCTTATGGTGAAAGTGATGAATACAGTTTTATTTTCAAGAG
GAAAACAACACAATTTAGTCGAAGGAAAAGTAAACTAATGACGAATATTG
TGTCATTGTTCTCTTCCTGTTTTGTTTTCCATTGGCAGAAATTCTTCCCG
GACACTAAACTTCAATATCCACCAATGTTTGACTCAAGAGTCGCTGTATA
CCCTGCTCTTGAGAATATTCGGGATTACTTAAATTGGAGACAAGCCGATT
GCCACATTAATAATCTTTATAATACTTGTTTTTGGACGTTAGTCAACAAG
AGTGGTTTAACCACGACAgaagctgaaaaaaaattaaaaggaacACTGTC
AGGAGATAAAAATGAAATGCTGTTCTCAGAGTTTGGTATAAATTACAATG
AGGAGCCTGATTCTTTTAAGAAGGGATCTGTGTTGATAAGAGAGCTTTAT
GAGGATGAAGTTGTTAAAAAAACAAAGGATGGTGAATTGACAAATGAAAC
AACAAAACGTACAAGGAGCAAAGTTGTACTTCTTCATCAAGACATAATAG
GAAATTCTTTTTGGAAACAACATCCtaatattttataaaactttttctct
ttttataaATAATCTTTCACAAAAAGCATtttatataagattttttttta
tattgggCTTGgttattaattatttttcctCACTGTAATAACATGAGAAT
ATGGAAATGCAGattatcaaaatgaaaaattaaaacctaTAAAGAAATCC
CATTTCACTCTTATCTTCCTGATCAATTTTATCCAAAGCTTATTTATTAA
GCTACTTTGATAAATGGAGGAATAGTTCAAtcgttttgagaatttttgaa
tAATAACACACTATATTCATGTTTGAGAATGACAATCTTTCATATAACCT
ACAATATTTTTCCCCCTTTTAGCAATGATTAAACTATCAGATGACAAACA
ATTTAATAACACTACTAATAACATTGGTTTGTTTCATTTGCTTCTACAAC
TCGTTGGAAAATGGATTCGTTCATGATGACATATTCGCCATTGTCAACAA
TAAAGACATCCTACCAAATACCTCTGTTTGGAATATCTTTTACAATGATT
TCTGGGGACGTACCCTGATTGATTCCAAAAGTCACAAATCCTTCAGACCA
ATATGTACTCTGACATTCAGATTTGATTATATGGTATTTGGATTGAACCC
ATTNTTATGTACTCTGACATTCAGATTTGATTATATGGTATTTGGATTGA
ACCCATTTGGTTATCACTTGGTCAATGTTTTGCTCCACATACTTGTCTGC
AATGTGCTTTTCCAAGTGTTACGAGatattgttttatttgataCAAAATT
ATCATTGATGGCAACTATACTGTTTGCAACACACCCTGTTCATGTAGAAg
ctgtaagtttttattttttcattgttttattcAACGTAGTCAAGAAGTGT
TTAAAACCCTCTAAAAGTCAGCAATCACTTTCTAaaatctttcacaaaaa
ttttgaatctcaGAAACATCACATCCTATTTGGACCTGTCCTATTGGACT
GTTTTATGACTGATATTGATGATTTTTAACGAAATTCTAGGTCACAGGTG
TTGTTGGAAGAGCTGATGTGCTGTCTTGTCTATTCGTACTACTTGCATTC
AAGGCTTACCACAAGTAAAATATatattcattaaaattttataaaactcT
TCAGTGATTGCATTTCCATTATTAAGACTTAAACATTTGGATGAGTCACA
GGCAAGAAACcagaagaaacaacaaaaatgtaTTTATTGATGATATTTAT
TGGTAGAGCATCTTCAGATCTTGGCATATAACATCTAACATTTACAAATT
CAGACATTTGattaaataatttaaatttatcGCGTTCATATATTCATATA
ATTCCTACCTGTTATGaaccaaaattaaaacataAGATAACTGGAATACA
TAAATGACACTCTAATCCTTTCTTTTTATAGATATCTTGCGACAACTCAA
AAGGTAAATATACTCTTCCTATTCATTTtcggaaaaacaaaaacaaaaga
tgtttatttNCCTACCAAATACCTCTGTTTGGAATATCTTTTACAATGAT
TTCTGGGGACGTACCCTGATTGATTCCAAAAGTCACAAATCCTTCAGACC
AATATGTACTCTGACATTCAGATTTGATTATATGGTATTTGGATTGAACC
CATTTGGTTATCACTTGGTCAATGTTTTGCTCCACATATTTGTCTGCAAT
GTGCTTTTTCAAGTGTTACGAGATATTATTCTATTTGACACAAAATTATC
GTTGATGGCAACTATACTGTTTGCAACACACCCTGTTCATGTAGAAGCtg
tgagttttttatttttttacctttttattcAACGTAGtcaaaaaacgttt
ttaaaaccCTCTAAAAGTTAGCAATCACTGTCTAAAATCTTTCACAAAAG
TTTTGACGTTCGGAAACCCAACCACCCTATTTGGACCCGTCCTTTTAGAA
GACTGTTTTATGACTCATATTGATGATTTTTAACCATATTCTAGGTAACA
GGTGTTGTTGGAAGAGCTGATATGTTGTCTTGTCTATTCGTACTACTTGC
ATTCAAGGCTTACCACAAGTAAAATATatattcattaaaattttataaaa
ctcTTCAGTGATTGCATTTCTATAATTAAAACTTAAACATTTGGATGAGT
CACaggcaagaaacaacaaaaatttatttattgatgATATTTATTGATAC
TCTATGGTAGAGCATCTTCAGATCTATCATAACTTGGCATATAACATCTA
GCATTTACAAATTCAGACATTTGattaaataatttaaatttatcGCGTTC
ATATATTTATATAATTCCTACCTGTTATGaaccaaaattaaaacataAGA
TAACTGGAATACATAAATAAAACTCTAATCCTTTCTTTTTATAGATATCT
TGTGACAACTCAACAGGTAAATATACTCTTCctattcattttcagaaaaa
caaaaacaaaaggtgtttattcatttttttaattttatgaaatttgcaat
taaaaatgaagataaaacttGCCGTTTCAAAATTACCCAAAAAGCCAAAC
AGTTATATTTATTCTTAACTAATATATTGATTACATTTCAGGATGTTTTT
TTCACTAGCGACCTTTTGGTAGTTGTTGCATATGGTACATCCACATTCTT
CATCAAAGAGCATTCTGTCATGATATTCTTTGTATTGATTGGTTACGATG
CTCTATGTAATAAACAATACATTGCAAGGTATTGCCATGATATTACTTTA
ATAGAGTTTTATATTTGGGAAATAAATGTtagaaattttataattttgct
CATTATTTTGAGCGTTCTTTTCAGCATCGAgattccgcaaaatttaatac
cacaatttttaaatcaatgGTCTGTCTGGTCCCTGTCTTATTTCCCTGGA
TGGTGGATGAGCATATTCGGGTGAAAGCGTGCTCACCCCTTGCAGGTCAC
TTCCCGTAAGCCCAGGCAAATCGACCACATAATGACTCGTTCAACGGTAA
TCGTCAGTTGTACAAAGTTTCTCGATTCTGGTTGGTTTAGAGTACCGTTA
CCTGCACTATTACCACTCTTTGCATTCTACGGCAGGGGTCACTTTTGTCA
ACTTGTCACTTTTGTCACTTTGAAagacaaagaaattttgcaatgCAATA
TCTTCTCttgatgaaaacaaagaaacatcGCACAGCAATGCCTTCTTTTa
gtcaaaagaacaaaaagaggTTTTCGAATCGAATTTTTGCTAAGATATAA
AAagataagaaatattttcatagacgattacctcggaatcgtatggtTTG
GGGTGCAATTAACGATGAAtgactcgtaacaaaggagaaaataccttAAT
TTtctactcgtgattaatcgttaattgcacaccaaaccatacgattacta
gttcTAATTAAAATCACCCAAGATCACGGGTAGAACCAGCCCTATGGAAT
GATAtgaatttcataaaaactttttaaaaaacgataaaaaagttaaattt
tcgTAGGTTCTATCTTCTGATTTCATTGAGAATAACAGAAGGGGACATCA
GTCTAACTTATTCAGCTatttaatgattttattttatattgatAGCATGT
TAACTGATGGAATTCATAGCAGCACAAAACAAATGCAAACAAGGTTTTTC
AAAAGAGTTGGATTTCTATTGGTTTGGGTGAGattttagtttaaaaaaaa
aactcatttaaAGCAAATTTTTAGGGATTGACACCTTTAGCTATTATTTA
TGCTACTTTTAGACCGTCAGGTTGGTTCAATGAGCATTGGTGAACTTCCT
ATAATTCTTTTTCACCTACCTCGAGGTTTACTTCATAAACACCAGCAATA
AATAATCTTTATTATCATTTATTTAGTTTTTGGCGTTGTTTCGATACCGT
ATGTACCCGATGAACTACACTTTACCAAAGTTCAAACTAGAAGACAACCC
TGCATCATTCTCACCACATCTCCAAACACGCATCTTAACTTATCTCTACT
TACTCATCTTCAACCTTAAACTTCTCTTATCACCCAATGTTCTGTGCTAC
GATTGGCAGATTGGAAGTATACCACTGGTTGAGACACTATCGGATACAAG
AAACTTGGAAACATTGTTCGGCCTTTCATTTTTTGTTATCACTGGTGTTA
ATCTTTTGACTTGGGTTTTTAAAAGGCCATCAAAAGAGGTATTATGTAAA
CCTNCAAAAGAGGTATACACATTATATGAAATGCTAGAATGTTTCTCGTT
GTATTTCATGGTAATTTCACGGGTGGCATAGTTCACACCACTACTTGGTG
GTACTAACTGGGTTAAAGCCCTGAAACTCTTCTTGTTCTCTTCTCTCGCA
ACCCAACAGTTTTTAAATACTCCAAATTGACTCAAATTCACCTCGTCCTG
TCCAAAGGACAATACTGTATACTGTCAATTAGATCAATTTGAAAGTGGGT
GATAAAACAACCCAGTTCTAtcctgaaggtcgggaaaattataGTTGATA
AAGAATTTACCTAGGGTAGGGGTTTATTAGGGGTTGTAACCCCTTTCTGT
TCTATGAAACGttacattttgaagtttttgttaCATTTCCCTTTATTCAT
ACATAACTTAGCTTTTTAATGTAAAATTCTTCAATCCTAGGTTGGGAAAG
AAACAGAAGTTTACAACTGCATACTGCATAGTTTGtatcaaataattttt
cttcGTTTAGGATTCGTATGACAACCATGCATTGGCGATTGGTCTCTTCT
TTCTGGTGATTTCTTTTCTGCCTGCTTCTAATTTCTTCATTCGTGTTGGC
TTTGTAGTTGCTGAAAGGATTCTTTACATACCAAGGTAATACACAGTCGG
TTTTGTAACATGATTGGAACACATGTGAAAAGTACAAGATTTGCATTGGA
CTTCTTTTAAGCCTGCTTTGtcctttaaaagatttttacctCATTTTGAG
TTTTTACTTTATTCATATTGCACAATTCTTAGTAAAGTAAGTCTACGACC
GCAGTCGCAGGCGACCTggaggctcctctttcgatggCTATCTACCCGGG
AGGGCGCCGCTCTTTCTCCCTTGATTGCTCCCTTGATTGCTCCCTTGATT
GCTCCATTAACTCTTGAtatttctcttaattgctgagcatcaagtatCAA
GTACCAATacgggaatctttggtatgacctgcctgagggttgaacccaca
actaGCCGGATGCACTACACTACGACCGCACAATTATTAAGTGATCTACT
CGTCAAATAAAcgctgtattataaatattctTGTTTTTAGCGTTGGTTAC
ACTATCTTGGTTGTGGTTGGATTGAATCGACTATGTCAGAAATTCCCTAA
ATTTAAAAACACCTTCTACTTTATGTTTGGGATGGCAGTCGTTCTCTTCA
CCTCCAAAACGATTTCTTACAATCGAGTCTGGAAAACAAGAGAGACACTG
TTTAGGTAGGTATGACTAAATCAATagtcataaaaaattttcattcaatg
GGCAAAGTTGTTTAAATAGAATATAAACAGTGATGCCGAAGTATGTAGTG
ACTTTACGNGTTTCATTCAATAGGCAAAGTTGTTTAAATAGAATATAAAC
AGTGATGCCGAAGTATGTAATGACTTTACGTACCTTTAAGAAGTGGTGCA
AataaatgggctattccataaAATATTCTATACAAGGGGGAGGATggacc
ttttcaagtcaaaaaggaATTGTAGATACCCCTGGAAAAAAATCCTCGGA
AAACTTCTTTTCGTACCTTATTGTAATGGTGgatgaactaaaatcagtct
atttttcatttcttgaaagTTTTGATTGTTGGGGCCTGGAGACGAGTTTT
ATGCCAAAAGGAGGAGGCTAAAGATTTGGGACAacctgaataaaaaaaat
cattgttaaATTAAGGTATACATCGAGACAATACGTTAAGAAAGAATTTA
AGGCCAACTAATAAGTAAATTTCATCCTCAgcccaaatttcaaaattcat
cattcttataaaaacttgtTATGATACCTATTTTACAGATCAGGCGTCGA
CACCCTACCACACAATGCAAAAGCTCACTACAACTATGCTAATTTTCTCA
AAGACGAAAATCGAACTGAACAAGCTGTttatcattataaaaaggcGGTC
GAGTAAGTTAAAGTTGAAAGGGATCGAACGTAATTTATTTGCCTGCcacc
ttttgataaaattttgaagcaaaatcaATTAGATAGAGGTATTACCATCC
AAAAGATGCAAGCAATCATTTTGCTTTTCTGTTAAGAGGTTGATGATGTT
TCTTGA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_021169	XLOC_021169	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0001405	supercontig	sc0001405:20621..27726 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.29594	2.60263	1.95655	1.84045	3.25532	1.31661	2.47892	3.01032	0.764299	0.388754	0.45187	0.599673	0.111282	0.41613	0.978982	0.95716	0.573005	0.813338	0	0	1.01516	1.2839	1.21332	1.66245	0.826273	2.39984	0.953489	1.51828	1.54776	1.49912

Blast

[Close]

BLAST of TCONS_00036014 vs. Swiss-Prot (Human)
Match: TMTC1 (Transmembrane and TPR repeat-containing protein 1 OS=Homo sapiens GN=TMTC1 PE=1 SV=3)

HSP 1 Score: 193.741 bits (491), Expect = 1.373e-52
Identity = 96/189 (50.79%), Postives = 130/189 (68.78%), Query Frame = 1

Query: 1069 SPNVLCYDWQIGSIPLVETLSDTRNLETLFGLSFFVITGVNLLTWVFKRPSKEDSYDNHALAIGLFFLVISFLPASNFFIRVGFVVAERILYIPSVGYTILVVVGLNRLCQKFPKFKNTFYFMFG-MAVVLFTSKTISYNRVWKTRETLFRSGVDTLPHNAKAHYNYANFLKDENRTEQAVYHYKKAVE 1632
            +P  LCYDWQ+GSIPLVET+ D RNL T+F      +  ++ L   FKR       ++  + +GL FLV  F+PASN F RVGFVVAER+LY+PS+GY IL V GL++LC    +   T   +   + ++LF+ KT+  N +W +RE+LFRSGV TLPHNAK HYNYANFLKD+ R ++A+YHY+ A++
Sbjct:  330 APVTLCYDWQVGSIPLVETIWDMRNLATIFLAVVMALLSLHCLA-AFKR------LEHKEVLVGLLFLVFPFIPASNLFFRVGFVVAERVLYMPSMGYCILFVHGLSKLCTWLNRCGATTLIVSTVLLLLLFSWKTVKQNEIWLSRESLFRSGVQTLPHNAKVHYNYANFLKDQGRNKEAIYHYRTALK 511

HSP 2 Score: 134.035 bits (336), Expect = 1.080e-32
Identity = 73/165 (44.24%), Postives = 102/165 (61.82%), Query Frame = 2

Query:  206 ICFYNSLENGFVHDDIFAIVNNKDILPNTSV-WNIFYNDFWGRTLIDSKSHKSFRPICTLTFRFDYMVFGLNPXLCTLTFRFDYMVFGLNPFGYHLVNVLLHILVCNVLFQVLRDIVLFDTKLSLMATILFATHPVHVEAVTGVVGRADVLSCLFVLLAFKAYHK 697
            +C+  SL+  FVHDD++AIVNN D+ P   + W IF NDFWG+ + ++ SHKS+RP                  LC LTF+ +  + G+NPF +H VN++LH LV  VL       V  +  L+ +  +LFA HP+H EAV G+VGRADVL+CL  LLAF +Y++
Sbjct:   39 LCYGRSLQGEFVHDDVWAIVNNPDVRPGAPLRWGIFTNDFWGKGMAENTSHKSYRP------------------LCVLTFKLNIFLTGMNPFYFHAVNIILHCLVTLVLMYTCDKTVFKNRGLAFVTALLFAVHPIHTEAVAGIVGRADVLACLLFLLAFLSYNR 185

The following BLAST results are available for this feature:

BLAST of TCONS_00036014 vs. Swiss-Prot (Human)

BLAST of TCONS_00036014 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
TMTC1	1.373e-52	50.79	Transmembrane and TPR repeat-containing protein 1 ...	[more]

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TCONS_00036014 (transcript) - C. hemisphaerica