TCONS_00036008 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036008
Unique NameTCONS_00036008
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length457

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036008 ID=TCONS_00036008|Name=TCONS_00036008|organism=Clytia hemisphaerica|type=transcript|length=457bp
AAAGCTATTGCAAGTCAAAATCTAAATAATTCGGCAGACATAGAAATGGA
AATCATCAGCTCGACAGAATCATCTACACCAATCAGATCTGGGAAAGAAA
AAAGCCTACAATACACGAAAGATAACTCAAAGTGTTGAAGTAAAAAAGGA
GATTGCTATACGGGAACCAGCAAGAAGATCTTCCAGAAatgtaaaatttt
cacaaaaagaagatgaagaacTTTTAAAGGGATTACAAAAGCATGGAGAG
AAGAACTGGGCAGCTATCATAAAAGATGAAACTTTTGACTTTCATCCATC
GAGAACTCGTGATTCTATAAGAGTACGAGCAGATTCTGCAGCATTTaaga
aacttataaaaaattgaatttaattgTAATCAAAAATAGGTTTTTATTAA
TATgaactaaattttaaaatgtaatttgtttatttaaaaatttaaatgca
ATTCTAA
Run BLAST on NCBI

transcript from alignment at sc0001401:49341..49797

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036008 ID=TCONS_00036008|Name=TCONS_00036008|organism=Clytia hemisphaerica|type=transcript|length=457bp|location=Sequence derived from alignment at sc0001401:49341..49797 (Clytia hemisphaerica)
TTAGAATtgcatttaaatttttaaataaacaaattacattttaaaattta
gttcATATTAATAAAAACCTATTTTTGATTAcaattaaattcaatttttt
ataagtttcttAAATGCTGCAGAATCTGCTCGTACTCTTATAGAATCACG
AGTTCTCGATGGATGAAAGTCAAAAGTTTCATCTTTTATGATAGCTGCCC
AGTTCTTCTCTCCATGCTTTTGTAATCCCTTTAAAAgttcttcatcttct
ttttgtgaaaattttacatTTCTGGAAGATCTTCTTGCTGGTTCCCGTAT
AGCAATCTCCTTTTTTACTTCAACACTTTGAGTTATCTTTCGTGTATTGT
AGGCTTTTTTCTTTCCCAGATCTGATTGGTGTAGATGATTCTGTCGAGCT
GATGATTTCCATTTCTATGTCTGCCGAATTATTTAGATTTTGACTTGCAA
TAGCTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021163XLOC_021163Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036008-exon-sc0001401-1491911889:49341..49797TCONS_00036008-exon-sc0001401-1491911889:49341..49797Clytia hemisphaericaexon
TCONS_00036008-exon-sc0001401-1510915933:49341..49797TCONS_00036008-exon-sc0001401-1510915933:49341..49797Clytia hemisphaericaexon
TCONS_00036008-exon-sc0001401-1575043694:49341..49797TCONS_00036008-exon-sc0001401-1575043694:49341..49797Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001401supercontigsc0001401:49341..49797 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.243049	1.61199	0.512826	0	0.33404	0.523445	0.31846	0.268759	0	0.298641	0	0.451483	0.163667	0.0988056	0.406158	0	0	0.110072	0	0.318263	0.361088	0.101038	0.328049	0.298244	0.460777	0	1.93429	2.88059	0	0.346638
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00036008 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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