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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00036004 ID=TCONS_00036004|Name=TCONS_00036004|organism=Clytia hemisphaerica|type=transcript|length=911bp
CTTTAATACAGAGTGGACGTGCTCAGTTACATTCTTTTCTTTATCTAATC
GTTTGTTAAGCTCCTTCACAATGGATGGAACATCCCTTTTCGATAAAGAT
AAATGAGGATCAGCAGGTTGTGTTTGTTTCTTTAGTTTCGCCGTTTTGAT
TTTAATCTCATTCAAAGGTGCCATAGGAATTGAACTTTTGGTGCTTCTTC
TGTGCCACCTTTGCAGTTGTTGTGTACAAGTCAATTCAATAATCTTTTCA
CCTGTCTCGTTAAACTGctttaaaaacaacaacaggGACAACACATGACA
GCAAAGTCCACACGAGCCAACATGACAATTACAATGCGCTTTAGACGGTG
CattattgttcaaatataaaactGCTGGCCGGGTTTCATATCCATAGGAT
TTCTTGATCATGGCTTTTACAAACAAATCACCTTCTTCAAGTCCTTGGAT
TGTCCTTACTGAAACTATCTTCCTACTTTGAAACATTCTAACTGCCTTCA
TCTGCTGCCCTTGACTTCCTTCTGATTTTTGCGAAGCATAAGATTTGAAT
TGTTCACTGGTGATGTTTGGATATGAATCATGATTACTAGACCACTTTGC
AGTAGAAGGAGGAATTTCCAAAGGGTTCAAACTGGACGAAAACTTGTAAT
GTCTCTTAGCTTTATTCTTCAGCTTCTTTACAAGTTTTGGGTAGCAAATA
AAACGTTTGATTCGATTGATCAGCTCATCTTTGGAGCCTGTTGAAGAAAG
ACCAATATCTTTTAACCACTCTAATGCTTCTTCTTTGGTAAATTTAGATA
CATTTTCAACTAACTTATTCGCGCTCATTCTACCttcctatattttttat
ttactttcgcTTTTGTATTTGGCTGTCGCTAccgatttgtttacatttta
gctaccatttt Run BLAST on NCBI protein sequence of TCONS_00036004-protein >TCONS_00036004-protein ID=TCONS_00036004-protein|Name=TCONS_00036004-protein|organism=Clytia hemisphaerica|type=polypeptide|length=276bp
MSANKLVENVSKFTKEEALEWLKDIGLSSTGSKDELINRIKRFICYPKLV
KKLKNKAKRHYKFSSSLNPLEIPPSTAKWSSNHDSYPNITSEQFKSYASQ
KSEGSQGQQMKAVRMFQSRKIVSVRTIQGLEEGDLFVKAMIKKSYGYETR
PAVLYLNNNAPSKAHCNCHVGSCGLCCHVLSLLLFLKQFNETGEKIIELT
CTQQLQRWHRRSTKSSIPMAPLNEIKIKTAKLKKQTQPADPHLSLSKRDV
PSIVKELNKRLDKEKNVTEHVHSVLK Run BLAST on NCBI transcript from alignment at sc0001401:8964..9874 Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00036004 ID=TCONS_00036004|Name=TCONS_00036004|organism=Clytia hemisphaerica|type=transcript|length=911bp|location=Sequence derived from alignment at sc0001401:8964..9874 (Clytia hemisphaerica)
aaaatggtagctaaaatgtaaacaaatcggTAGCGACAGCCAAATACAAA
AgcgaaagtaaataaaaaatataggaaGGTAGAATGAGCGCGAATAAGTT
AGTTGAAAATGTATCTAAATTTACCAAAGAAGAAGCATTAGAGTGGTTAA
AAGATATTGGTCTTTCTTCAACAGGCTCCAAAGATGAGCTGATCAATCGA
ATCAAACGTTTTATTTGCTACCCAAAACTTGTAAAGAAGCTGAAGAATAA
AGCTAAGAGACATTACAAGTTTTCGTCCAGTTTGAACCCTTTGGAAATTC
CTCCTTCTACTGCAAAGTGGTCTAGTAATCATGATTCATATCCAAACATC
ACCAGTGAACAATTCAAATCTTATGCTTCGCAAAAATCAGAAGGAAGTCA
AGGGCAGCAGATGAAGGCAGTTAGAATGTTTCAAAGTAGGAAGATAGTTT
CAGTAAGGACAATCCAAGGACTTGAAGAAGGTGATTTGTTTGTAAAAGCC
ATGATCAAGAAATCCTATGGATATGAAACCCGGCCAGCagttttatattt
gaacaataatGCACCGTCTAAAGCGCATTGTAATTGTCATGTTGGCTCGT
GTGGACTTTGCTGTCATGTGTTGTCcctgttgttgtttttaaagCAGTTT
AACGAGACAGGTGAAAAGATTATTGAATTGACTTGTACACAACAACTGCA
AAGGTGGCACAGAAGAAGCACCAAAAGTTCAATTCCTATGGCACCTTTGA
ATGAGATTAAAATCAAAACGGCGAAACTAAAGAAACAAACACAACCTGCT
GATCCTCATTTATCTTTATCGAAAAGGGATGTTCCATCCATTGTGAAGGA
GCTTAACAAACGATTAGATAAAGAAAAGAATGTAACTGAGCACGTCCACT
CTGTATTAAAG Coding sequence (CDS) from alignment at sc0001401:8964..9874 >TCONS_00036004 ID=TCONS_00036004|Name=TCONS_00036004|organism=Clytia hemisphaerica|type=CDS|length=828bp|location=Sequence derived from alignment at sc0001401:8964..9874 (Clytia hemisphaerica)
ATGAGCGCGAATAAGTTAGTTGAAAATGTATCTAAATTTACCAAAGAAGA
AGCATTAGAGTGGTTAAAAGATATTGGTCTTTCTTCAACAGGCTCCAAAG
ATGAGCTGATCAATCGAATCAAACGTTTTATTTGCTACCCAAAACTTGTA
AAGAAGCTGAAGAATAAAGCTAAGAGACATTACAAGTTTTCGTCCAGTTT
GAACCCTTTGGAAATTCCTCCTTCTACTGCAAAGTGGTCTAGTAATCATG
ATTCATATCCAAACATCACCAGTGAACAATTCAAATCTTATGCTTCGCAA
AAATCAGAAGGAAGTCAAGGGCAGCAGATGAAGGCAGTTAGAATGTTTCA
AAGTAGGAAGATAGTTTCAGTAAGGACAATCCAAGGACTTGAAGAAGGTG
ATTTGTTTGTAAAAGCCATGATCAAGAAATCCTATGGATATGAAACCCGG
CCAGCagttttatatttgaacaataatGCACCGTCTAAAGCGCATTGTAA
TTGTCATGTTGGCTCGTGTGGACTTTGCTGTCATGTGTTGTCcctgttgt
tgtttttaaagCAGTTTAACGAGACAGGTGAAAAGATTATTGAATTGACT
TGTACACAACAACTGCAAAGGTGGCACAGAAGAAGCACCAAAAGTTCAAT
TCCTATGGCACCTTTGAATGAGATTAAAATCAAAACGGCGAAACTAAAGA
AACAAACACAACCTGCTGATCCTCATTTATCTTTATCGAAAAGGGATGTT
CCATCCATTGTGAAGGAGCTTAACAAACGATTAGATAAAGAAAAGAATGT
AACTGAGCACGTCCACTCTGTATTAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00036004-exon-sc0001401-1491911889:8964..9874 | TCONS_00036004-exon-sc0001401-1491911889:8964..9874 | Clytia hemisphaerica | exon |
| TCONS_00036004-exon-sc0001401-1510915933:8964..9874 | TCONS_00036004-exon-sc0001401-1510915933:8964..9874 | Clytia hemisphaerica | exon |
| TCONS_00036004-exon-sc0001401-1575043694:8964..9874 | TCONS_00036004-exon-sc0001401-1575043694:8964..9874 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001401 | supercontig | sc0001401:8964..9874 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR003034 | SAP_dom |
Blast
The following BLAST results are available for this feature:
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