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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00036003 ID=TCONS_00036003|Name=TCONS_00036003|organism=Clytia hemisphaerica|type=transcript|length=1717bp
NNATAAAGAATGAAGTCCTGACACTCGCCTCAACTATTTCACGAGGTCCG
TTTTGTGCGCTCATGCATTCTTTGTATAACAATGAAGCAATAAAACAAAC
TGACCACCATTACATTTACTAGATCCATGACTTGTTTTGTAGTGGGTACC
AGAGAAAAGAGTAACATACCAGCAGATAGAATTTATTATGCATATTAAGT
AAGATAGCAGACTTTGCCTACCATGCCAATCTGCAAATGGAGCATTGTTt
atttttccccaatttttcAAGGTAATGTTAGCAGCAATGTCTTATTAAca
catttttcagattttaataaTCAAGggtgtttaaatttcttttgaacAAA
AAGGTATGTCAACCTAATGGGTAAAAGCATGTAATGTAAATTATTAAAAT
GATCAGTTTTTCGGTAAAAAAATTGGGGGTTGGGAAACAAAGACTGAAGA
TCTGACACTCATCTCAACTTAATTGAGGTCCGTTGTGCAATCATGCCTTC
TTTGTACTGTTTTTATTGAAAAAAAAATTGCTTCAATATAAAGAATGAAG
TCCTGACACTCGCCTCAACTATTTCACGAGGTCCGTTTTGTGCGCTCATG
CATTCTTTGTATATCAATGAAGTAATAAAACAAACTGACCACATTTACAG
TTACTAGATCCATGTCTTGTTTTGTAGTGGGTACCAGAGAAAAGAGTAAA
CTTCATGTCAGTAAATGAAATTCATCATGCATTAAATAAGAAGGCAGATT
TTGCTTATTATGGCAATCTATAAATGAAATGTGGTTTATTTTTCCCCAAG
ATAGTaatgttagaaagcatttcaTAGTAACGAGCGTGTAATTTCTTTCA
TTCAAAATCTGAACCTAAGGTCTGTAAGGAAATGGGGttgttttaagttt
ttcatttgTGAATAATGGGACTGAATTTGTGCAAAAATCGTGTTTAAATT
TGACAATTGATATTAGATTTTCAATAGATTTTGTTGTACTTGCATAGTGT
GATCAAAGATCTGTCACATAATCTAGAGTCTCTCTAACTCTGAATTCAAG
TGCCAAATTtaagaataaataaaacttgCTTTAAACTACTAATTCTGAAA
CTTAAGAAACTAATACAGTCACAAATTGCAGACTACTAAATTGACCAAGA
CTTGTGTCAAAATATGTACNAGTCTCTCTAACTCTGAATTCAAGTGCCAA
ATTtaagaataaataaaacttgCTTTAAACTACTAATTCTGAAACTTAAG
AAACTAATACAGTCACAAATTGCAGACTACTAAATTGACCAAGACTTGTG
TCAAAATATGTACTATGGTATTTGTGAAGTGTCCTCTATTTtcactttac
ttttcttttaagaaatagaaaattgtatcaagatttattttagtttttct
atTTAGTTCGTAataaaatcatttatttttatttttgttgatgaAGTTGA
TAATTATGAAATACCACGGGTCCTCTTACTTACCttagtttgattgtttt
tatcttttttaacaTGTGATGTGTTCATTTTATGAGGCATGCAAAGATCA
GAAATAAGTGAAAGTAGAtcaaaaaatgcttaaaatagtttattttacat
tttttgctgaaattAACATTTCAAGTTTCTTTATGGGAAAATAATGTAAT
GGCAATTGAAAATTAAGCTTCCGTAAAATTTATCCTTATATCTTTAAagt
aaaaaacatttcttttt Run BLAST on NCBI transcript from alignment at sc0001401:57156..58872+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00036003 ID=TCONS_00036003|Name=TCONS_00036003|organism=Clytia hemisphaerica|type=transcript|length=1717bp|location=Sequence derived from alignment at sc0001401:57156..58872+ (Clytia hemisphaerica)
NNATAAAGAATGAAGTCCTGACACTCGCCTCAACTATTTCACGAGGTCCG
TTTTGTGCGCTCATGCATTCTTTGTATAACAATGAAGCAATAAAACAAAC
TGACCACCATTACATTTACTAGATCCATGACTTGTTTTGTAGTGGGTACC
AGAGAAAAGAGTAACATACCAGCAGATAGAATTTATTATGCATATTAAGT
AAGATAGCAGACTTTGCCTACCATGCCAATCTGCAAATGGAGCATTGTTt
atttttccccaatttttcAAGGTAATGTTAGCAGCAATGTCTTATTAAca
catttttcagattttaataaTCAAGggtgtttaaatttcttttgaacAAA
AAGGTATGTCAACCTAATGGGTAAAAGCATGTAATGTAAATTATTAAAAT
GATCAGTTTTTCGGTAAAAAAATTGGGGGTTGGGAAACAAAGACTGAAGA
TCTGACACTCATCTCAACTTAATTGAGGTCCGTTGTGCAATCATGCCTTC
TTTGTACTGTTTTTATTGAAAAAAAAATTGCTTCAATATAAAGAATGAAG
TCCTGACACTCGCCTCAACTATTTCACGAGGTCCGTTTTGTGCGCTCATG
CATTCTTTGTATATCAATGAAGTAATAAAACAAACTGACCACATTTACAG
TTACTAGATCCATGTCTTGTTTTGTAGTGGGTACCAGAGAAAAGAGTAAA
CTTCATGTCAGTAAATGAAATTCATCATGCATTAAATAAGAAGGCAGATT
TTGCTTATTATGGCAATCTATAAATGAAATGTGGTTTATTTTTCCCCAAG
ATAGTaatgttagaaagcatttcaTAGTAACGAGCGTGTAATTTCTTTCA
TTCAAAATCTGAACCTAAGGTCTGTAAGGAAATGGGGttgttttaagttt
ttcatttgTGAATAATGGGACTGAATTTGTGCAAAAATCGTGTTTAAATT
TGACAATTGATATTAGATTTTCAATAGATTTTGTTGTACTTGCATAGTGT
GATCAAAGATCTGTCACATAATCTAGAGTCTCTCTAACTCTGAATTCAAG
TGCCAAATTtaagaataaataaaacttgCTTTAAACTACTAATTCTGAAA
CTTAAGAAACTAATACAGTCACAAATTGCAGACTACTAAATTGACCAAGA
CTTGTGTCAAAATATGTACNAGTCTCTCTAACTCTGAATTCAAGTGCCAA
ATTtaagaataaataaaacttgCTTTAAACTACTAATTCTGAAACTTAAG
AAACTAATACAGTCACAAATTGCAGACTACTAAATTGACCAAGACTTGTG
TCAAAATATGTACTATGGTATTTGTGAAGTGTCCTCTATTTtcactttac
ttttcttttaagaaatagaaaattgtatcaagatttattttagtttttct
atTTAGTTCGTAataaaatcatttatttttatttttgttgatgaAGTTGA
TAATTATGAAATACCACGGGTCCTCTTACTTACCttagtttgattgtttt
tatcttttttaacaTGTGATGTGTTCATTTTATGAGGCATGCAAAGATCA
GAAATAAGTGAAAGTAGAtcaaaaaatgcttaaaatagtttattttacat
tttttgctgaaattAACATTTCAAGTTTCTTTATGGGAAAATAATGTAAT
GGCAATTGAAAATTAAGCTTCCGTAAAATTTATCCTTATATCTTTAAagt
aaaaaacatttcttttt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00036003-exon-sc0001401-1491911889:57156..58872 | TCONS_00036003-exon-sc0001401-1491911889:57156..58872 | Clytia hemisphaerica | exon |
| TCONS_00036003-exon-sc0001401-1510915933:57156..58872 | TCONS_00036003-exon-sc0001401-1510915933:57156..58872 | Clytia hemisphaerica | exon |
| TCONS_00036003-exon-sc0001401-1575043694:57156..58872 | TCONS_00036003-exon-sc0001401-1575043694:57156..58872 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001401 | supercontig | sc0001401:57156..58872 + |
Blast
The following BLAST results are available for this feature:
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