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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00036001 ID=TCONS_00036001|Name=TCONS_00036001|organism=Clytia hemisphaerica|type=transcript|length=563bp
CTAAAAGCGCTCATATTAGGCTGATACATCTCTGAACGGTTTCGTTtgta
aataaaagaaagaccGAAAAAAAGTTCACTATTGCTGGAGTTTGTTGCAG
AGACAGGATGGctgcacaaaatcgcaactttaTGCAAAGATGGGGAGCCT
TATTGTATGGAGGAACCAAGATTCAGATCATTCATTTTATGCAGGCCCAT
GGTTTACTTGCGGTTAATAAAATGTGCATTTGTAACGGTCAAATGCACCT
GAACGCCTGCCAAGCAAGTCCTGATGGTTACAGATGGCTGGTCGAGGAAG
ACGTGCACAGGCTCCAGTTTGGGTTTTCGGCCTCGTAGATACGAGATTTC
AGCCAAGTAAGGGATACATGGAAATTGTTGCAAGACGAGACCGCGCAACC
CTTACTGCAGTCATAAATCGTGTCCTGCAACCAAACAGTGTAGTTCATAG
TGATGAGTGGAGGGGTTACATTAGACTTCCTCAATTTGTTCCGAATTGCG
TGCACCACGGAACTGTAAACCACACAGTAAATTTCGTCGATCCAAGAACT
GGCGTCCACACAC Run BLAST on NCBI transcript from alignment at sc0001401:30128..32323+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00036001 ID=TCONS_00036001|Name=TCONS_00036001|organism=Clytia hemisphaerica|type=transcript|length=2196bp|location=Sequence derived from alignment at sc0001401:30128..32323+ (Clytia hemisphaerica)
CTAAAAGCGCTCATATTAGGCTGATACATCTCTGAACGGTTTCGTTtgta
aataaaagaaagaccGAAAAAAAGTTCACTATTGCTGGAGTTTGTTGCAG
AGACAGGATGGctgcacaaaatcgcaactttaTGCAAAGATGGGGAGCCT
TATTGTATGGAGGAACCAAGATTCAGATCATTCATTTTATGCAGGCCCAT
GGTTTACTTGCGGTTAATAAAATGTGCATTTGTAACGGTCAAATGCACCT
GAACGCCTGCCAAGCAAGTCCTGATGGTTACAGATGGTATGGTACTTTCT
GTATTGACGATTAGATTTCATCGATATTTTCTACCTTGTCTAGTTGACAC
GGGGTCTCTCGAAAACAATAATGTTTTTTACCAATCTCGTTTGTTCTGAG
CTTAACTTGTTGGCCGAACGTCCGAAATAATATGCCCAGTAATCAACCGC
ACACCTAATTCTCGTGAGTCAGAGGAGCGTTCTTCTGTCATAGTCTACTC
TTTCACTACATCGAAGTGCAGAATTAAATAATCAAGGTTTTATTAACATT
TCCCGATCTGAATCTTGTAACACCTTTCCCCTTTCTTGGTATTTTTAGGA
GATGTACGCGGCCATGCAGAAGGACCCTGACCGTTAGGTCAGGTACAGTT
TTTGAATCATGGAGAAGATTTCCCTTGGAAGATCTTTTTAAAGCCATCTA
CCTCTGGGCCAATAAGCTTAATGTGACCGAAATTCAGAGATTGACCGGTT
TGCCCAAGAAGGCTGTTATCAAAATGGGACAGATTCTTCGACAAGTATGC
AGAAACAGTCTTGGTAGAAATCCAATAAGATTGGGAGGAGGTGGGTTTAA
TTTTGTGGTCCAAGTGGATGAGACACAAGCCCATCATCGTCAAAgggtaa
agatttttttaagcttcaTACAATATGaccagtagcggcctggcttaaat
ttcttggtggtgcaaactatgaaattggcgcccctggtatttttgtcctt
atttgggcttatttgcgccctccatcattaagtgaaaatattaaactatc
TCAACTTTTTCTCCTTATCAGTACACAAAATTCCAAACATTAAACATTAC
TACTTTCTCTTGGACTGGAGACAATTGGATTATCTTTGTAACGCGAgatg
gtcttactttactctccattaaagatcaatggctgagagaggccccaaaa
attcagAAGTTGGGAGGAAGGGTTCCTTGTAATTTTGGCACCGATGGCAA
caattttgatgtaaaaaaggtcaaacagcctaaaagatcttctaaaacgg
agaaagttagtcagtataagaccacaaaaaccacagcgagaatTAACAAG
TTTTAAtcattttggcaatctctcatttttgGGGTGACCATTCTCTTTAA
CTCCtagtggatacacaacacttctcttacttgtgattcaatattgatag
aagttttttaaaaattcaagagaaaggatGTGAGAGGGTAAAATAAAGCG
CCGCAtgcgaaaaaaattaacattgtactcATAGAAGGCGCTGTAAACGT
GCCGAAGGGCGCCAAATTGCCTAAATAAACATGAACACAATTTTgacgcc
cccttgaaaagctcttttggcaccctgcaccccctgcaccccctgccagg
ccgccactgaaTATGACGTAAGATTTTATCGATGAATCTAGCTTCGGTTT
TCAGGAAACAAAACTTTATCAGTCTTACGCTCCCCtggatttttctcaaa
aagttttcaTAGGCTTACTTTATTCAGCTTCATTATTTTGAAAGGCTTTA
AAGTCAGTATGTTCTTGTCGGCTTCACAACATTGACGATAAGGctgtttt
gaacttttttagGTTTTAGATCTCAGGGCTTCAATATCTGATTAATTTGA
CCTTTATACTTAATTTAAGGCTGGTCGAGGAAGACGTGCACAGGCTCCAG
TTTGGGTTTTCGGCCTCGTAGATACGAGATTTCAGCCAAGTAAGGGATAC
ATGGAAATTGTTGCAAGACGAGACCGCGCAACCCTTACTGCAGTCATAAA
TCGTGTCCTGCAACCAAACAGTGTAGTTCATAGTGATGAGTGGAGGGGTT
ACATTAGACTTCCTCAATTTGTTCCGAATTGCGTGCACCACGGAACTGTA
AACCACACAGTAAATTTCGTCGATCCAAGAACTGGCGTCCACACAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00036001-exon-sc0001401-1491911889:30128..30413 | TCONS_00036001-exon-sc0001401-1491911889:30128..30413 | Clytia hemisphaerica | exon |
| TCONS_00036001-exon-sc0001401-1510915933:30128..30413 | TCONS_00036001-exon-sc0001401-1510915933:30128..30413 | Clytia hemisphaerica | exon |
| TCONS_00036001-exon-sc0001401-1575043694:30128..30413 | TCONS_00036001-exon-sc0001401-1575043694:30128..30413 | Clytia hemisphaerica | exon |
| TCONS_00036001-exon-sc0001401-1491911889:32047..32323 | TCONS_00036001-exon-sc0001401-1491911889:32047..32323 | Clytia hemisphaerica | exon |
| TCONS_00036001-exon-sc0001401-1510915933:32047..32323 | TCONS_00036001-exon-sc0001401-1510915933:32047..32323 | Clytia hemisphaerica | exon |
| TCONS_00036001-exon-sc0001401-1575043694:32047..32323 | TCONS_00036001-exon-sc0001401-1575043694:32047..32323 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001401 | supercontig | sc0001401:30128..32323 + |
Blast
The following BLAST results are available for this feature:
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