TCONS_00036000 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036000
Unique NameTCONS_00036000
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1343

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036000 ID=TCONS_00036000|Name=TCONS_00036000|organism=Clytia hemisphaerica|type=transcript|length=1343bp
AGTCAAAACAACTTTAATATTCTCAAAGTTGTTTATTAGAATATGAACGA
TATAAATAAACAAAGCCAATGGCCTTTTTATGTTTAATATCTAAAAGCGC
TCATATTAGGCTGATACATCTCTGAACGGTTTCGTTtgtaaataaaagaa
agaccGAAAAAAAGTTCACTATTGCTGGAGTTTGTTGCAGAGACAGGATG
GctgcacaaaatcgcaactttaTGCAAAGATGGGGAGCCTTATTGTATGG
AGGAACCAAGATTCAGATCATTCATTTTATGCAGGCCCATGGTTTACTTG
CGGTTAATAAAATGTGCATTTGTAACGGTCAAATGCACCTGAACGCCTGC
CAAGCAAGTCCTGATGGTTACAGATGGTATGGTACTTTCTGTATTGACGA
TTAGATTTCATCGATATTTTCTACCTTGTCTAGTTGACACGGGGTCTCTC
GAAAACAATAATGTTTTTTACCAATCTCGTTTGTTCTGAGCTTAACTTGT
TGGCCGAACGTCCGAAATAATATGCCCAGTAATCAACCGCACACCTAATT
CTCGTGAGTCAGAGGAGCGTTCTTCTGTCATAGTCTACTCTTTCACTACA
TCGAAGTGCAGAATTAAATAATCAAGGTTTTATTAACATTTCCCGATCTG
AATCTTGTAACACCTTTCCCCTTTCTTGGTATTTTTAGGAGATGTACGCG
GCCATGCAGAAGGACCCTGACCGTTAGGTCAGGTACAGTTTTTGAATCAT
GGAGAAGATTTCCCTTGGAAGATCTTTTTAAAGCCATCTACCTCTGGGCC
AATAAGCTTAATGTGACCGAAATTCAGAGATTGACCGGTTTGCCCAAGAA
GGCTGTTATCAAAATGGGACAGATTCTTCGACAAGTATGCAGAAACAGTC
TTGGTAGAAATCCAATAAGATTGGGAGGAGGTGGGTTTAATTTTGTGGTC
CAAGTGGATGAGACACAAGCCCATCATCGTCAAAggGCTGGTCGAGGAAG
ACGTGCACAGGCTCCAGTTTGGGTTTTCGGCCTCGTAGATACGAGATTTC
AGCCAAGTAAGGGATACATGGAAATTGTTGCAAGACGAGACCGCGCAACC
CTTACTGCAGTCATAAATCGTGTCCTGCAACCAAACAGTGTAGTTCATAG
TGATGAGTGGAGGGGTTACATTAGACTTCCTCAATTTGTTCCGAATTGCG
TGCACCACGGAACTGTAAACCACACAGTAAATTTCGTCGATCCAAGAACT
GGCGTCCACACACAACATGTTGAAAGTTATTGGAACAAGTTCAAATTGAA
ACTTAAAGAGATGAAAGGAGTGTTAAGAATGAATTTGCAGAGC
Run BLAST on NCBI

protein sequence of TCONS_00036000-protein

>TCONS_00036000-protein ID=TCONS_00036000-protein|Name=TCONS_00036000-protein|organism=Clytia hemisphaerica|type=polypeptide|length=160bp
MGQILRQVCRNSLGRNPIRLGGGGFNFVVQVDETQAHHRQRAGRGRRAQA
PVWVFGLVDTRFQPSKGYMEIVARRDRATLTAVINRVLQPNSVVHSDEWR
GYIRLPQFVPNCVHHGTVNHTVNFVDPRTGVHTQHVESYWNKFKLKLKEM
KGVLRMNLQS
Run BLAST on NCBI

transcript from alignment at sc0001401:30038..32732+

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036000 ID=TCONS_00036000|Name=TCONS_00036000|organism=Clytia hemisphaerica|type=transcript|length=2695bp|location=Sequence derived from alignment at sc0001401:30038..32732+ (Clytia hemisphaerica)
AGTCAAAACAACTTTAATATTCTCAAAGTTGTTTATTAGAATATGAACGA
TATAAATAAACAAAGCCAATGGCCTTTTTATGTTTAATATCTAAAAGCGC
TCATATTAGGCTGATACATCTCTGAACGGTTTCGTTtgtaaataaaagaa
agaccGAAAAAAAGTTCACTATTGCTGGAGTTTGTTGCAGAGACAGGATG
GctgcacaaaatcgcaactttaTGCAAAGATGGGGAGCCTTATTGTATGG
AGGAACCAAGATTCAGATCATTCATTTTATGCAGGCCCATGGTTTACTTG
CGGTTAATAAAATGTGCATTTGTAACGGTCAAATGCACCTGAACGCCTGC
CAAGCAAGTCCTGATGGTTACAGATGGTATGGTACTTTCTGTATTGACGA
TTAGATTTCATCGATATTTTCTACCTTGTCTAGTTGACACGGGGTCTCTC
GAAAACAATAATGTTTTTTACCAATCTCGTTTGTTCTGAGCTTAACTTGT
TGGCCGAACGTCCGAAATAATATGCCCAGTAATCAACCGCACACCTAATT
CTCGTGAGTCAGAGGAGCGTTCTTCTGTCATAGTCTACTCTTTCACTACA
TCGAAGTGCAGAATTAAATAATCAAGGTTTTATTAACATTTCCCGATCTG
AATCTTGTAACACCTTTCCCCTTTCTTGGTATTTTTAGGAGATGTACGCG
GCCATGCAGAAGGACCCTGACCGTTAGGTCAGGTACAGTTTTTGAATCAT
GGAGAAGATTTCCCTTGGAAGATCTTTTTAAAGCCATCTACCTCTGGGCC
AATAAGCTTAATGTGACCGAAATTCAGAGATTGACCGGTTTGCCCAAGAA
GGCTGTTATCAAAATGGGACAGATTCTTCGACAAGTATGCAGAAACAGTC
TTGGTAGAAATCCAATAAGATTGGGAGGAGGTGGGTTTAATTTTGTGGTC
CAAGTGGATGAGACACAAGCCCATCATCGTCAAAgggtaaagattttttt
aagcttcaTACAATATGaccagtagcggcctggcttaaatttcttggtgg
tgcaaactatgaaattggcgcccctggtatttttgtccttatttgggctt
atttgcgccctccatcattaagtgaaaatattaaactatcTCAACTTTTT
CTCCTTATCAGTACACAAAATTCCAAACATTAAACATTACTACTTTCTCT
TGGACTGGAGACAATTGGATTATCTTTGTAACGCGAgatggtcttacttt
actctccattaaagatcaatggctgagagaggccccaaaaattcagAAGT
TGGGAGGAAGGGTTCCTTGTAATTTTGGCACCGATGGCAAcaattttgat
gtaaaaaaggtcaaacagcctaaaagatcttctaaaacggagaaagttag
tcagtataagaccacaaaaaccacagcgagaatTAACAAGTTTTAAtcat
tttggcaatctctcatttttgGGGTGACCATTCTCTTTAACTCCtagtgg
atacacaacacttctcttacttgtgattcaatattgatagaagtttttta
aaaattcaagagaaaggatGTGAGAGGGTAAAATAAAGCGCCGCAtgcga
aaaaaattaacattgtactcATAGAAGGCGCTGTAAACGTGCCGAAGGGC
GCCAAATTGCCTAAATAAACATGAACACAATTTTgacgcccccttgaaaa
gctcttttggcaccctgcaccccctgcaccccctgccaggccgccactga
aTATGACGTAAGATTTTATCGATGAATCTAGCTTCGGTTTTCAGGAAACA
AAACTTTATCAGTCTTACGCTCCCCtggatttttctcaaaaagttttcaT
AGGCTTACTTTATTCAGCTTCATTATTTTGAAAGGCTTTAAAGTCAGTAT
GTTCTTGTCGGCTTCACAACATTGACGATAAGGctgttttgaactttttt
agGTTTTAGATCTCAGGGCTTCAATATCTGATTAATTTGACCTTTATACT
TAATTTAAGGCTGGTCGAGGAAGACGTGCACAGGCTCCAGTTTGGGTTTT
CGGCCTCGTAGATACGAGATTTCAGCCAAGTAAGGGATACATGGAAATTG
TTGCAAGACGAGACCGCGCAACCCTTACTGCAGTCATAAATCGTGTCCTG
CAACCAAACAGTGTAGTTCATAGTGATGAGTGGAGGGGTTACATTAGACT
TCCTCAATTTGTTCCGAATTGCGTGCACCACGGAACTGTAAACCACACAG
TAAATTTCGTCGATCCAAGAACTGGCGTCCACACACAAGTAAGCTCACAN
TGTGATGAGTGGAGGGGCTACATTAGACTTCCTCAATTTGTTCCGAATTG
CGTGCACCACGGAACTGTAAACCACACAGTAAATTTCGTCGATCCAAGAA
CTGGCGTCCACACACAAGTAAGCTCACACTTCTGAAACCTTTTCATTGGG
TTGTTAACATGCTTTCTATCCATTTTTTAATCTCACACAGTGAGAGTTAA
AGACATTGAAGAAGATGAAGGTAATTTCGAAATACTCTGCTTCTTTACCT
AGTAATAATTCACCTAGCCTAAGGTTCGTTTCATAaagctaaaaacattt
ttatctcTATTTTTAAGCATGTTGAAAGTTATTGGAACAAGTTCAAATTG
AAACTTAAAGAGATGAAAGGAGTGTTAAGAATGAATTTGCAGAGC

Coding sequence (CDS) from alignment at sc0001401:30038..32732+

>TCONS_00036000 ID=TCONS_00036000|Name=TCONS_00036000|organism=Clytia hemisphaerica|type=CDS|length=1440bp|location=Sequence derived from alignment at sc0001401:30038..32732+ (Clytia hemisphaerica)
ATGGGACAGATTCTTCGACAAGTATGCAGAAACAGTCTTGGTAGAAATCC
AATAAGATTGGGAGGAGGTGGGTTTAATTTTGTGGTCCAAGTGGATGAGA
CACAAGCCCATCATCGTCAAAggGCTGGTCGAGGAAGACGTGCACAGGCT
CCAGTTTGGGTTTTCGGCCTCGTAGATACGAGATTTCAGCCAAGTAAGGG
ATACATGGAAATTGTTGCAAGACGAGACCGCGCAACCCTTACTGCAGTCA
TAAATCGTGTCCTGCAACCAAACAGTGTAGTTCATAGTGATGAGTGGAGG
GGTTACATTAGACTTCCTCAATTTGTTCCGAATTGCGTGCACCACGGAAC
TGTAAACCACACAGTAAATTTCGTCGATCCAAGAACTGGCGTCCACACAC
AACATGTTGAAAGTTATTGGAACAAGTTCAAATTGAAACTTAAAGAGATG
AAAGGAGTGTTAAGAATGAATTTGCAGAGCATGGGACAGATTCTTCGACA
AGTATGCAGAAACAGTCTTGGTAGAAATCCAATAAGATTGGGAGGAGGTG
GGTTTAATTTTGTGGTCCAAGTGGATGAGACACAAGCCCATCATCGTCAA
AggGCTGGTCGAGGAAGACGTGCACAGGCTCCAGTTTGGGTTTTCGGCCT
CGTAGATACGAGATTTCAGCCAAGTAAGGGATACATGGAAATTGTTGCAA
GACGAGACCGCGCAACCCTTACTGCAGTCATAAATCGTGTCCTGCAACCA
AACAGTGTAGTTCATAGTGATGAGTGGAGGGGTTACATTAGACTTCCTCA
ATTTGTTCCGAATTGCGTGCACCACGGAACTGTAAACCACACAGTAAATT
TCGTCGATCCAAGAACTGGCGTCCACACACAACATGTTGAAAGTTATTGG
AACAAGTTCAAATTGAAACTTAAAGAGATGAAAGGAGTGTTAAGAATGAA
TTTGCAGAGCATGGGACAGATTCTTCGACAAGTATGCAGAAACAGTCTTG
GTAGAAATCCAATAAGATTGGGAGGAGGTGGGTTTAATTTTGTGGTCCAA
GTGGATGAGACACAAGCCCATCATCGTCAAAggGCTGGTCGAGGAAGACG
TGCACAGGCTCCAGTTTGGGTTTTCGGCCTCGTAGATACGAGATTTCAGC
CAAGTAAGGGATACATGGAAATTGTTGCAAGACGAGACCGCGCAACCCTT
ACTGCAGTCATAAATCGTGTCCTGCAACCAAACAGTGTAGTTCATAGTGA
TGAGTGGAGGGGTTACATTAGACTTCCTCAATTTGTTCCGAATTGCGTGC
ACCACGGAACTGTAAACCACACAGTAAATTTCGTCGATCCAAGAACTGGC
GTCCACACACAACATGTTGAAAGTTATTGGAACAAGTTCAAATTGAAACT
TAAAGAGATGAAAGGAGTGTTAAGAATGAATTTGCAGAGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021157XLOC_021157Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036000-proteinTCONS_00036000-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036000-exon-sc0001401-1491911889:30038..31023TCONS_00036000-exon-sc0001401-1491911889:30038..31023Clytia hemisphaericaexon
TCONS_00036000-exon-sc0001401-1510915933:30038..31023TCONS_00036000-exon-sc0001401-1510915933:30038..31023Clytia hemisphaericaexon
TCONS_00036000-exon-sc0001401-1575043694:30038..31023TCONS_00036000-exon-sc0001401-1575043694:30038..31023Clytia hemisphaericaexon
TCONS_00036000-exon-sc0001401-1491911889:32047..32325TCONS_00036000-exon-sc0001401-1491911889:32047..32325Clytia hemisphaericaexon
TCONS_00036000-exon-sc0001401-1510915933:32047..32325TCONS_00036000-exon-sc0001401-1510915933:32047..32325Clytia hemisphaericaexon
TCONS_00036000-exon-sc0001401-1575043694:32047..32325TCONS_00036000-exon-sc0001401-1575043694:32047..32325Clytia hemisphaericaexon
TCONS_00036000-exon-sc0001401-1491911889:32655..32732TCONS_00036000-exon-sc0001401-1491911889:32655..32732Clytia hemisphaericaexon
TCONS_00036000-exon-sc0001401-1510915933:32655..32732TCONS_00036000-exon-sc0001401-1510915933:32655..32732Clytia hemisphaericaexon
TCONS_00036000-exon-sc0001401-1575043694:32655..32732TCONS_00036000-exon-sc0001401-1575043694:32655..32732Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001401supercontigsc0001401:30038..32732 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0887087	0.035423	0	0.337522	0.290821	0.233909	0.437965	0.0383287	0.261245	0.316964	0.121169	0.121001	0.157075	0.335757	0.362225	0.657605	0.881996	0.0483508	0	0.835559	0.579159	0.260757	0.228286	0.470258	0.523003	0.124736	0.532486	0.100968	0.10287
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR024445Tnp_ISXO2-like
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00036000 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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