TCONS_00035999 (transcript) - C. hemisphaerica

Overview
NameTCONS_00035999
Unique NameTCONS_00035999
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length367

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00035999 ID=TCONS_00035999|Name=TCONS_00035999|organism=Clytia hemisphaerica|type=transcript|length=367bp
AATGCTTCTTCAAAATCCATATCTTCCTCATCTCTAACCCTTTGTAAAGT
TTCCATCACAGATTTATGTGTTTTATCCTTTTTCATTGCTCGaagaaaaa
gtattttgtatttataaatCTCATGAATTGATAAGTCAGTCTCTTGACAT
TCGTTCAACATGCTCTCCCAAATATTAAATGTTTCTTTAACACTTTGAGA
TTCTTCACTATCACTGGACATGGGCTCGCTGTCTGTAAAGTCTTCATCAg
actcttcattttcttcttcagatTCTTCAGGGTGGGCCTTTGCAACATGT
CGATTATAATTGCTTTTATTGGAAAAGGTCTTTTCGCAATCGTCGCATTC
ATACATCGTGTTTCTCN
Run BLAST on NCBI

protein sequence of TCONS_00035999-protein

>TCONS_00035999-protein ID=TCONS_00035999-protein|Name=TCONS_00035999-protein|organism=Clytia hemisphaerica|type=polypeptide|length=121bp
RNTMYECDDCEKTFSNKSNYNRHVAKAHPEESEEENEESDEDFTDSEPMS
SDSEESQSVKETFNIWESMLNECQETDLSIHEIYKYKILFLRAMKKDKTH
KSVMETLQRVRDEEDMDFEEA
Run BLAST on NCBI

transcript from alignment at sc0001399:46138..46504

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00035999 ID=TCONS_00035999|Name=TCONS_00035999|organism=Clytia hemisphaerica|type=transcript|length=367bp|location=Sequence derived from alignment at sc0001399:46138..46504 (Clytia hemisphaerica)
NGAGAAACACGATGTATGAATGCGACGATTGCGAAAAGACCTTTTCCAAT
AAAAGCAATTATAATCGACATGTTGCAAAGGCCCACCCTGAAGAatctga
agaagaaaatgaagagtcTGATGAAGACTTTACAGACAGCGAGCCCATGT
CCAGTGATAGTGAAGAATCTCAAAGTGTTAAAGAAACATTTAATATTTGG
GAGAGCATGTTGAACGAATGTCAAGAGACTGACTTATCAATTCATGAGat
ttataaatacaaaatactttttcttCGAGCAATGAAAAAGGATAAAACAC
ATAAATCTGTGATGGAAACTTTACAAAGGGTTAGAGATGAGGAAGATATG
GATTTTGAAGAAGCATT

Coding sequence (CDS) from alignment at sc0001399:46138..46504

>TCONS_00035999 ID=TCONS_00035999|Name=TCONS_00035999|organism=Clytia hemisphaerica|type=CDS|length=363bp|location=Sequence derived from alignment at sc0001399:46138..46504 (Clytia hemisphaerica)
AGAAACACGATGTATGAATGCGACGATTGCGAAAAGACCTTTTCCAATAA
AAGCAATTATAATCGACATGTTGCAAAGGCCCACCCTGAAGAatctgaag
aagaaaatgaagagtcTGATGAAGACTTTACAGACAGCGAGCCCATGTCC
AGTGATAGTGAAGAATCTCAAAGTGTTAAAGAAACATTTAATATTTGGGA
GAGCATGTTGAACGAATGTCAAGAGACTGACTTATCAATTCATGAGattt
ataaatacaaaatactttttcttCGAGCAATGAAAAAGGATAAAACACAT
AAATCTGTGATGGAAACTTTACAAAGGGTTAGAGATGAGGAAGATATGGA
TTTTGAAGAAGCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021156XLOC_021156Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035999-proteinTCONS_00035999-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035999-exon-sc0001399-1491911889:46138..46504TCONS_00035999-exon-sc0001399-1491911889:46138..46504Clytia hemisphaericaexon
TCONS_00035999-exon-sc0001399-1510915933:46138..46504TCONS_00035999-exon-sc0001399-1510915933:46138..46504Clytia hemisphaericaexon
TCONS_00035999-exon-sc0001399-1575043694:46138..46504TCONS_00035999-exon-sc0001399-1575043694:46138..46504Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001399supercontigsc0001399:46138..46504 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.875858	0	0	3.6337	1.91427	12.4135	14.0537	8.5148	10.3066	6.36977	1.91913	1.41699	1.86105	0.510011	1.23147	4.04552	3.61521	0.477388	0.749328	12.5115	11.4366	3.08947	5.3835	2.89298	1.8597	1.53946	1.97155	9.71977	8.88722
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013087Znf_C2H2_type
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00035999 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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