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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00035997 ID=TCONS_00035997|Name=TCONS_00035997|organism=Clytia hemisphaerica|type=transcript|length=3534bp
taataaaaagatatcttcaagctccttttttgttttcaggttGACAATTT
CGAATTCGAAAAGATAGACTATAAAGAGTACAAAGCGGTGTTCGCGGATG
AATGGAATGGTGTATGGTTGTATGAATTACCATTTTCGAATGCCGAATAC
TTATGGATTGTACCATGTCCAAGTCGTGTTCTCAATTCTGGCATTCCCAG
ATTAAGAgacgaaggcttcaaaatacTTAACTTGAGAACCAATCTACGAA
ACTCGAAAGAAATCGTCAATATGTCCAAAGTAATAAATGAGAAAAAGTCT
GCAGCAACATTATCATATGGTATAGCGGATCCCCAACAAATTTTCCCAAA
AGGACCGTCTCCAACACACGTGAGTACAATAAATGATGCTATCATTTTAG
AACGTAAAAAGTCGAACTTAGAAGGACTTTTGATCATAATAAGTAGCTTT
GATAAAAATAGAGATATCGACCCTAAAAGTAACGGAGAGgtcaaatattt
tgatgaattttcagGCAAGGAAAATCCCTATGAGTTCTTAAGTAATAAAG
GGAAAGGAAACATTTTGGTACTTAACGATGACAAGTTAGAAGTAATTGAT
GGGTTTGAATGGACAACCATAATTATTGATTCACATCTCGTATTTGATAA
TAACATGTCCATGAGATGTACAACAACTCTTTACATTGTCGGAGAcaaaa
ttgaagatgaagatgattaCGATGAGAAAGACGGGTTCCCAAAACATGAA
GTTTTCAAATTGATTGAAATCACTGGAGATGAAGAGCATGATGGTTTACT
TTATCGGTTCAAATTATACACAAGAAACTTCTTTATATTTCCGACAAATG
CGAGAAAGATTTTACCTCTTTTCAAACAGTGCATACAAAGCATAAACAAT
ATTTCAATGAAGGACGCAACAGAACATGAGAAGGCTTATTGTTTGTTGAA
GTTATCAGAGATTATAATAAGTTTTGAACGTGATTATTTTagtaatgaag
atgaaaatactttcaaaaaagatgATCCCGAAATTTTGGCATTATTAGAA
AGAATCAGAAGTTTGTCTTCACAGGACCATATGGACTTAAAATTGGAAGA
TTGCCGCGAATACATAATACAGTTAAAAACTTTTAGGTCAATATTTGACA
TTGAAGGTAAATTTGATGGTCTATTATCAgaaatggaaaatattttaaat
agtTGAATAACTAAAACATTAGGCTGTCTCATTTAATATACATACAGGGG
GTGAACAACGCTTTCAAGTCAAAAATTATTCTTGACATTGTGTCAAAGAT
ACCCCTTGGAAAGTCGgtaaatttgtgaaaaaaaaccTTGAAGAAATTCT
TCTTCATGCCCTAAAGTGAGGGTTggcgaactaaaatcagtcgcTTACCA
CGTCGAAGTTTTAGATAGCTTTTAGCCCTCTGGAAATCTTTCTCGGGCTA
CCCCCGAAAAATTATCTTCCACCCCTGTATCGACATAAAATGGGATGGCC
tttcttcttttaatttttatttttccttttaggTGTATCCGTGttcagta
cacgtttttttaaagctttataagaAAGAACAAAatgcttcaatggccaa
aatattaagaccAAGTTAAAAGCATTTTAAGTCTTTGCGAACTCACCCGA
TTTCTTACCAAAAGTAACAATAATACTCACataatggtaaaaataagaat
atgttaagaatactTTTGttgttaggcttaaaactcaaatagttaagaac
atctgaagacttcaaagattttgcatgttcttataaagaaacccTCTTAT
TTTATCCTTTTTTAAGTATTGTAGTGAAACGTCCTAAGAAATCAGGGGTT
TTAGAttcctcaaagccttaaaatgttctcaacttgttcttaatattttg
gccatgtGTAGACCACCTAAGGTTAGGATTTAGGCGCTGGGGAATATCTT
TTGAACTTTCGTATCTAAGTGTATCTGTAAATTTAACAAGTACACCACCT
AAGGTTAGGATTTAGGCGCTGGGGAATATCTTTTGAACTTTCGTATCAAA
GTCTATCTGTAAATTTAACAAGAAAAAGTCGTCAATTTTATATACATATC
GTAATCACATACCATACTAAGACTGATGTTCATTTGTCAGACTTTATACT
ATAACATTTTATATACACATGTAATATAAAAGCACAAAAGGGGGTGggaa
aaggattttttttgcattttcaggGTGAGGGGATTTGACAACCGGGAAGT
CTAAAATTTCTAGGGGGTAACTTACCAGGAGGAAACTATGTAATGTaaca
tttaacttttttgtaatcagtttttaattaatttcaatATATACACCACT
ATATAGCTAAAAACCATACCTATCTTTCATTAAGCCATCCCAACATTGAG
AAATCAGACGATGCTATATATCTTATGCCAATAATGTGCTAATGCCACCG
ACTCCTAATATTTAAATCACTGACCCCCAATGTCATGGTTATATGTAGTT
GGTGCCTTGAGAAAAGTCAGCTAAAAAGGCCCTTCTTTAGAACAAAAggg
acttttcttttttttgcaaaagctgaaaatattttcaaaaatcaagaaaa
acgggGGAGGAGGAGGGgtggaaaatattcaaaaatcaagaagatTGTGA
CAGATTAGGgaggattttttttgaaacctaTGAGTAAAAAGTGCTGTACT
AAAagtaaaatctgtaaaaaagGCATGGAAGatgagaaataaataaaata
acgTACCTGTAATTGTGTCCAGCTCAATGTCTCCAAATCCATGACCCAAA
TATCATCCAATGAGCGATTAGGTAACGGCAACCCACCAATCAAAATCACT
TTCTTCTGATATTCGACACACACGTGTGAATGTCTCGGCTCAGGATAAAT
CATAGAGTCTAGTGTACCATCTTTTGAAGTACATCTCAATTTTTCCCATA
TTTTTGTGTCGTAATTAAAACTGTGTAAGTATCGAAACCCAAAAATACGA
TACGAAGTAGCCCCGCCTAAAACGTAGAACCGATTGTCTTTAGATATAGA
GGCGTGTCGATAGCGAGGCTCTGGGATTGTATCCCGATGAATGGAACAAA
AATTATGAGCAGTCCAAAACATGTTATGTAGACAAAACGAATGCAAatcg
ttttcaaattcaagTCCAAGTGTGCCCGCAAAAACGTACAGTTTCCCGGC
CGGTGAAATAGTAATACTTTGTCCGTATTTCGGATTCGGTGCCGCATTCC
GTATTTCCGTACACTCACATGGCTTGACCTTGATCTCGTTTTCATCACAT
CCTTGAATTATGGCTTGATCCTTGGCTAGTTTGGTCAAGTTAAACCATTT
GTAAGAACGTAAACAATACAGTGATAAATGATTACTGTTCTGTTCAGCGA
ATGGGTAGCCGGTGCCCCCAAAAGTAATGATTTTTTGGTCCCAATACGTC
ATTGATATAGAAGCACCAGATAATGGCGACCCATTTTCTTTGTCCGGTAA
AATGGTCCATACGTTAGCGGAGGTGTTATATCTG Run BLAST on NCBI protein sequence of TCONS_00035997-protein >TCONS_00035997-protein ID=TCONS_00035997-protein|Name=TCONS_00035997-protein|organism=Clytia hemisphaerica|type=polypeptide|length=311bp
MSKVINEKKSAATLSYGIADPQQIFPKGPSPTHVSTINDAIILERKKSNL
EGLLIIISSFDKNRDIDPKSNGEVKYFDEFSGKENPYEFLSNKGKGNILV
LNDDKLEVIDGFEWTTIIIDSHLVFDNNMSMRCTTTLYIVGDKIEDEDDY
DEKDGFPKHEVFKLIEITGDEEHDGLLYRFKLYTRNFFIFPTNARKILPL
FKQCIQSINNISMKDATEHEKAYCLLKLSEIIISFERDYFSNEDENTFKK
DDPEILALLERIRSLSSQDHMDLKLEDCREYIIQLKTFRSIFDIEGKFDG
LLSEMENILNS Run BLAST on NCBI transcript from alignment at sc0001399:26924..30457 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00035997 ID=TCONS_00035997|Name=TCONS_00035997|organism=Clytia hemisphaerica|type=transcript|length=3534bp|location=Sequence derived from alignment at sc0001399:26924..30457 (Clytia hemisphaerica)
CAGATATAACACCTCCGCTAACGTATGGACCATTTTACCGGACAAAGAAA
ATGGGTCGCCATTATCTGGTGCTTCTATATCAATGACGTATTGGGACCAA
AAAATCATTACTTTTGGGGGCACCGGCTACCCATTCGCTGAACAGAACAG
TAATCATTTATCACTGTATTGTTTACGTTCTTACAAATGGTTTAACTTGA
CCAAACTAGCCAAGGATCAAGCCATAATTCAAGGATGTGATGAAAACGAG
ATCAAGGTCAAGCCATGTGAGTGTACGGAAATACGGAATGCGGCACCGAA
TCCGAAATACGGACAAAGTATTACTATTTCACCGGCCGGGAAACTGTACG
TTTTTGCGGGCACACTTGGActtgaatttgaaaacgatTTGCATTCGTTT
TGTCTACATAACATGTTTTGGACTGCTCATAATTTTTGTTCCATTCATCG
GGATACAATCCCAGAGCCTCGCTATCGACACGCCTCTATATCTAAAGACA
ATCGGTTCTACGTTTTAGGCGGGGCTACTTCGTATCGTATTTTTGGGTTT
CGATACTTACACAGTTTTAATTACGACACAAAAATATGGGAAAAATTGAG
ATGTACTTCAAAAGATGGTACACTAGACTCTATGATTTATCCTGAGCCGA
GACATTCACACGTGTGTGTCGAATATCAGAAGAAAGTGATTTTGATTGGT
GGGTTGCCGTTACCTAATCGCTCATTGGATGATATTTGGGTCATGGATTT
GGAGACATTGAGCTGGACACAATTACAGGTAcgttattttatttatttct
catCTTCCATGCcttttttacagattttactTTTAGTACAGCACTTTTTA
CTCAtaggtttcaaaaaaaatcctcCCTAATCTGTCACAatcttcttgat
ttttgaatattttccacCCCTCCTCCTCCcccgtttttcttgatttttga
aaatattttcagcttttgcaaaaaaaagaaaagtcccTTTTGTTCTAAAG
AAGGGCCTTTTTAGCTGACTTTTCTCAAGGCACCAACTACATATAACCAT
GACATTGGGGGTCAGTGATTTAAATATTAGGAGTCGGTGGCATTAGCACA
TTATTGGCATAAGATATATAGCATCGTCTGATTTCTCAATGTTGGGATGG
CTTAATGAAAGATAGGTATGGTTTTTAGCTATATAGTGGTGTATATattg
aaattaattaaaaactgattacaaaaaagttaaatgttACATTACATAGT
TTCCTCCTGGTAAGTTACCCCCTAGAAATTTTAGACTTCCCGGTTGTCAA
ATCCCCTCACcctgaaaatgcaaaaaaaatccttttccCACCCCCTTTTG
TGCTTTTATATTACATGTGTATATAAAATGTTATAGTATAAAGTCTGACA
AATGAACATCAGTCTTAGTATGGTATGTGATTACGATATGTATATAAAAT
TGACGACTTTTTCTTGTTAAATTTACAGATAGACTTTGATACGAAAGTTC
AAAAGATATTCCCCAGCGCCTAAATCCTAACCTTAGGTGGTGTACTTGTT
AAATTTACAGATACACTTAGATACGAAAGTTCAAAAGATATTCCCCAGCG
CCTAAATCCTAACCTTAGGTGGTCTACacatggccaaaatattaagaaca
agttgagaacattttaaggctttgaggaaTCTAAAACCCCTGATTTCTTA
GGACGTTTCACTACAATACTTAAAAAAGGATAAAATAAGAgggtttcttt
ataagaacatgcaaaatctttgaagtcttcagatgttcttaactatttga
gttttaagcctaacaaCAAAagtattcttaacatattcttatttttacca
ttatGTGAGTATTATTGTTACTTTTGGTAAGAAATCGGGTGAGTTCGCAA
AGACTTAAAATGCTTTTAACTTggtcttaatattttggccattgaagcat
TTTGTTCTTtcttataaagctttaaaaaaacgtgtactgaaCACGGATAC
AcctaaaaggaaaaataaaaattaaaagaagaaaGGCCATCCCATTTTAT
GTCGATACAGGGGTGGAAGATAATTTTTCGGGGGTAGCCCGAGAAAGATT
TCCAGAGGGCTAAAAGCTATCTAAAACTTCGACGTGGTAAgcgactgatt
ttagttcgccAACCCTCACTTTAGGGCATGAAGAAGAATTTCTTCAAggt
tttttttcacaaatttacCGACTTTCCAAGGGGTATCTTTGACACAATGT
CAAGAATAATTTTTGACTTGAAAGCGTTGTTCACCCCCTGTATGTATATT
AAATGAGACAGCCTAATGTTTTAGTTATTCAactatttaaaatattttcc
atttcTGATAATAGACCATCAAATTTACCTTCAATGTCAAATATTGACCT
AAAAGTTTTTAACTGTATTATGTATTCGCGGCAATCTTCCAATTTTAAGT
CCATATGGTCCTGTGAAGACAAACTTCTGATTCTTTCTAATAATGCCAAA
ATTTCGGGATcatcttttttgaaagtattttcatcttcattactAAAATA
ATCACGTTCAAAACTTATTATAATCTCTGATAACTTCAACAAACAATAAG
CCTTCTCATGTTCTGTTGCGTCCTTCATTGAAATATTGTTTATGCTTTGT
ATGCACTGTTTGAAAAGAGGTAAAATCTTTCTCGCATTTGTCGGAAATAT
AAAGAAGTTTCTTGTGTATAATTTGAACCGATAAAGTAAACCATCATGCT
CTTCATCTCCAGTGATTTCAATCAATTTGAAAACTTCATGTTTTGGGAAC
CCGTCTTTCTCATCGtaatcatcttcatcttcaattttgTCTCCGACAAT
GTAAAGAGTTGTTGTACATCTCATGGACATGTTATTATCAAATACGAGAT
GTGAATCAATAATTATGGTTGTCCATTCAAACCCATCAATTACTTCTAAC
TTGTCATCGTTAAGTACCAAAATGTTTCCTTTCCCTTTATTACTTAAGAA
CTCATAGGGATTTTCCTTGCctgaaaattcatcaaaatatttgacCTCTC
CGTTACTTTTAGGGTCGATATCTCTATTTTTATCAAAGCTACTTATTATG
ATCAAAAGTCCTTCTAAGTTCGACTTTTTACGTTCTAAAATGATAGCATC
ATTTATTGTACTCACGTGTGTTGGAGACGGTCCTTTTGGGAAAATTTGTT
GGGGATCCGCTATACCATATGATAATGTTGCTGCAGACTTTTTCTCATTT
ATTACTTTGGACATATTGACGATTTCTTTCGAGTTTCGTAGATTGGTTCT
CAAGTTAAgtattttgaagccttcgtcTCTTAATCTGGGAATGCCAGAAT
TGAGAACACGACTTGGACATGGTACAATCCATAAGTATTCGGCATTCGAA
AATGGTAATTCATACAACCATACACCATTCCATTCATCCGCGAACACCGC
TTTGTACTCTTTATAGTCTATCTTTTCGAATTCGAAATTGTCaacctgaa
aacaaaaaaggagcttgaagatatctttttatta Coding sequence (CDS) from alignment at sc0001399:26924..30457 >TCONS_00035997 ID=TCONS_00035997|Name=TCONS_00035997|organism=Clytia hemisphaerica|type=CDS|length=936bp|location=Sequence derived from alignment at sc0001399:26924..30457 (Clytia hemisphaerica)
TCAactatttaaaatattttccatttcTGATAATAGACCATCAAATTTAC
CTTCAATGTCAAATATTGACCTAAAAGTTTTTAACTGTATTATGTATTCG
CGGCAATCTTCCAATTTTAAGTCCATATGGTCCTGTGAAGACAAACTTCT
GATTCTTTCTAATAATGCCAAAATTTCGGGATcatcttttttgaaagtat
tttcatcttcattactAAAATAATCACGTTCAAAACTTATTATAATCTCT
GATAACTTCAACAAACAATAAGCCTTCTCATGTTCTGTTGCGTCCTTCAT
TGAAATATTGTTTATGCTTTGTATGCACTGTTTGAAAAGAGGTAAAATCT
TTCTCGCATTTGTCGGAAATATAAAGAAGTTTCTTGTGTATAATTTGAAC
CGATAAAGTAAACCATCATGCTCTTCATCTCCAGTGATTTCAATCAATTT
GAAAACTTCATGTTTTGGGAACCCGTCTTTCTCATCGtaatcatcttcat
cttcaattttgTCTCCGACAATGTAAAGAGTTGTTGTACATCTCATGGAC
ATGTTATTATCAAATACGAGATGTGAATCAATAATTATGGTTGTCCATTC
AAACCCATCAATTACTTCTAACTTGTCATCGTTAAGTACCAAAATGTTTC
CTTTCCCTTTATTACTTAAGAACTCATAGGGATTTTCCTTGCctgaaaat
tcatcaaaatatttgacCTCTCCGTTACTTTTAGGGTCGATATCTCTATT
TTTATCAAAGCTACTTATTATGATCAAAAGTCCTTCTAAGTTCGACTTTT
TACGTTCTAAAATGATAGCATCATTTATTGTACTCACGTGTGTTGGAGAC
GGTCCTTTTGGGAAAATTTGTTGGGGATCCGCTATACCATATGATAATGT
TGCTGCAGACTTTTTCTCATTTATTACTTTGGACAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00035997-exon-sc0001399-1491911889:26924..30457 | TCONS_00035997-exon-sc0001399-1491911889:26924..30457 | Clytia hemisphaerica | exon |
| TCONS_00035997-exon-sc0001399-1510915933:26924..30457 | TCONS_00035997-exon-sc0001399-1510915933:26924..30457 | Clytia hemisphaerica | exon |
| TCONS_00035997-exon-sc0001399-1575043694:26924..30457 | TCONS_00035997-exon-sc0001399-1575043694:26924..30457 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001399 | supercontig | sc0001399:26924..30457 . |
Blast
BLAST of TCONS_00035997 vs. Swiss-Prot (Human)
Match: KLD10 (Kelch domain-containing protein 10 OS=Homo sapiens GN=KLHDC10 PE=1 SV=1) HSP 1 Score: 115.931 bits (289), Expect = 4.853e-27 Identity = 75/258 (29.07%), Postives = 116/258 (44.96%), Query Frame = -2
Query: 2760 RYNTSANVWTILPDKENGSPLSGASISMTYWDQKIITFGGTGYPFAEQNSNHLSLYCLRSYKWFNLTKLAKDQAIIQGCDENEIKVKPCECTEIRNAAPNPKYGQSITISPAGKLYVFAGTLGLEFENDLHSFCLHNMFWTAHNFCSIHRDTIPEPRYRHASISKDNRFYVLGGATSYRIFGFRYLHSFNYDTKIWEKLRCTSKDGTLDSMIYPEPRHSHVCVEYQKKVILIGGLPLPNRSLDDIWVMDLETLSWTQL 3533
RY+ + VW + + P AS+S+ ++ FGGTG PF E N N + + ++ +W L+ R P+ YGQ++ I G LYVF GT G + DLH L+ WT ++ D +PE RYRH R Y+LGG TS+ + +H++N +T WE++ + + +P R H CV+ + V + GG L DIW ++L+T W +L
Sbjct: 133 RYHFATGVWHQM-GTDGYMPRELASMSLVLHGNNLLVFGGTGIPFGESNGNDVHVCNVKYKRWALLS--------------------------CRGKKPSRIYGQAMAII-NGSLYVFGGTTGYIYSTDLHKLDLNTREWTQLKPNNLSCD-LPEERYRHEIAHDGQRIYILGGGTSWTAYSLNKIHAYNLETNAWEEIATKPH----EKIGFPAARRCHSCVQIKNDVFICGGYN-GEVILGDIWKLNLQTFQWVKL 356
The following BLAST results are available for this feature:
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