TCONS_00035993 (transcript) - C. hemisphaerica

Overview
NameTCONS_00035993
Unique NameTCONS_00035993
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length475

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00035993 ID=TCONS_00035993|Name=TCONS_00035993|organism=Clytia hemisphaerica|type=transcript|length=475bp
CTGTGCTCTTTTGAATGGTGACTTTAGATTTCTTGGATTTTATCTCATTT
GGGAGAAAGCTGTCCAAATTTGGACATAAGGCTTTTTACTTTTACATGTG
CTAGAATAAAGTGGACTTAAGCTAATTTAAATGTTATGAATTGATAGATT
AAGAATAGATTCTTGATATAAAACGACTAGAAACTTATTATACCTACCTG
CTCATTGTTTATCAGTTTCTTAATTGaaattgtgggattgttttcaTCAC
TTTTATTAAGCAATTTATACTTAAGTCCATTTTCCAGTGAAATTTATAGA
AGAAAAATGCCTTATGTCCATTTCTGTTGACGAATGCGCGCCATTATGGT
ACACTCAATGGCGCactcattgattttttttttcaaaaatgtgatACACA
ACTACCAAAAAGGCAGAATTAGTGAAAacacttgaaaattttacaataaG
TCTTCGTCGTTAGGCTCAAGCAAAT
Run BLAST on NCBI

transcript from alignment at sc0001399:9411..9885

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00035993 ID=TCONS_00035993|Name=TCONS_00035993|organism=Clytia hemisphaerica|type=transcript|length=475bp|location=Sequence derived from alignment at sc0001399:9411..9885 (Clytia hemisphaerica)
ATTTGCTTGAGCCTAACGACGAAGACttattgtaaaattttcaagtgtTT
TCACTAATTCTGCCTTTTTGGTAGTTGTGTatcacatttttgaaaaaaaa
aatcaatgagtGCGCCATTGAGTGTACCATAATGGCGCGCATTCGTCAAC
AGAAATGGACATAAGGCATTTTTCTTCTATAAATTTCACTGGAAAATGGA
CTTAAGTATAAATTGCTTAATAAAAGTGAtgaaaacaatcccacaatttC
AATTAAGAAACTGATAAACAATGAGCAGGTAGGTATAATAAGTTTCTAGT
CGTTTTATATCAAGAATCTATTCTTAATCTATCAATTCATAACATTTAAA
TTAGCTTAAGTCCACTTTATTCTAGCACATGTAAAAGTAAAAAGCCTTAT
GTCCAAATTTGGACAGCTTTCTCCCAAATGAGATAAAATCCAAGAAATCT
AAAGTCACCATTCAAAAGAGCACAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021150XLOC_021150Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035993-exon-sc0001399-1491911889:9411..9885TCONS_00035993-exon-sc0001399-1491911889:9411..9885Clytia hemisphaericaexon
TCONS_00035993-exon-sc0001399-1510915933:9411..9885TCONS_00035993-exon-sc0001399-1510915933:9411..9885Clytia hemisphaericaexon
TCONS_00035993-exon-sc0001399-1575043694:9411..9885TCONS_00035993-exon-sc0001399-1575043694:9411..9885Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001399supercontigsc0001399:9411..9885 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.947126	0.660882	1.62789	1.5095	1.10121	0.855708	0.864436	2.25624	1.24045	0.699062	0.685803	0.532962	0.177407	1.20589	0.908817	0.844007	1.11218	0.206965	0	0.148363	0.386863	0.188698	0.30585	0	0	1.40582	0.182884	0.390357	0.592143	0.30165
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00035993 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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