|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00035991 ID=TCONS_00035991|Name=TCONS_00035991|organism=Clytia hemisphaerica|type=transcript|length=951bp
GGATAAGAACCCCGGCATTCGACCGATCGGCATCGGGGAAGTTCTTAGAC
GCATCGTTGGAAAGACTGTTACAACATTCCTGAGGAATGAAATACAAGAA
GCAGCTGGCAATCTCCAACTGTGCGCTGGTCAGCTGGGTGGATGTGAGGC
TGCAGTGCACGCGATGGCAGACATCTACAACGACGAGAACACAGACGGTG
TTCTACTGGTCGACGCTTCAAATGCATTTAACAGCATAAATCGTGAAGTT
ATGATGCACAACATTAACATCCTTTGTCCAACCTTGGCGATGTTTGCTAC
CAACTGCTATTCGAACCACGTCCGTCTGTTTGCGATTGGAGGAGCAGAGC
TGTCGTCTTCTGAAGGTACAACACAAGGAGATCCGATCGCTATGGCTCTC
TACGGCATATGTTTGCTTCCCTTGACCGACCCCCTCCGAAACGTACCAGA
TACCAAACAAGTCGCGTACGCTGACGACATCACTGGTGCTGGTAAACTTG
TTGCACTACGCAAGTGGTGGGATGACCTAACGCAACTCGGTCCAACTATC
GGCTACTACCCAGAACCTATTAAGTCATGGTTGATAGTAAAACCTGAAAT
GTATCAAACGGCACTCGACACATTCGAAGGTACGTCTATAAAGATCACAG
CAAAGGGGCATAAACATCTCGGTGCTTCTGTTGGGGAAAAAAGCTACAAG
AAGGAATTCGTGTCAAATAAAGTCGAAACCTGggttaaagaaatcaaaac
tttgTCAGACATTGCAATAACTCAACCCCAAGCTGCGTATGTCGCCTTCG
TTATTGGCTACCGGCAAAAATTCAACTACATCATCCGAACTCTAGACAAT
ATATCAGAATTGCTTCGACCCATCGAAAATGTCATCCATTTTCACCTCAT
ACCAGCCATATGTGATGGCAGACAGTGCTCCGATATTGAAAGGAAGATCC
T Run BLAST on NCBI protein sequence of TCONS_00035991-protein >TCONS_00035991-protein ID=TCONS_00035991-protein|Name=TCONS_00035991-protein|organism=Clytia hemisphaerica|type=polypeptide|length=316bp
DKNPGIRPIGIGEVLRRIVGKTVTTFLRNEIQEAAGNLQLCAGQLGGCEA
AVHAMADIYNDENTDGVLLVDASNAFNSINREVMMHNINILCPTLAMFAT
NCYSNHVRLFAIGGAELSSSEGTTQGDPIAMALYGICLLPLTDPLRNVPD
TKQVAYADDITGAGKLVALRKWWDDLTQLGPTIGYYPEPIKSWLIVKPEM
YQTALDTFEGTSIKITAKGHKHLGASVGEKSYKKEFVSNKVETWVKEIKT
LSDIAITQPQAAYVAFVIGYRQKFNYIIRTLDNISELLRPIENVIHFHLI
PAICDGRQCSDIERKI Run BLAST on NCBI transcript from alignment at sc0001398:58558..59508 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00035991 ID=TCONS_00035991|Name=TCONS_00035991|organism=Clytia hemisphaerica|type=transcript|length=951bp|location=Sequence derived from alignment at sc0001398:58558..59508 (Clytia hemisphaerica)
AGGATCTTCCTTTCAATATCGGAGCACTGTCTGCCATCACATATGGCTGG
TATGAGGTGAAAATGGATGACATTTTCGATGGGTCGAAGCAATTCTGATA
TATTGTCTAGAGTTCGGATGATGTAGTTGAATTTTTGCCGGTAGCCAATA
ACGAAGGCGACATACGCAGCTTGGGGTTGAGTTATTGCAATGTCTGAcaa
agttttgatttctttaaccCAGGTTTCGACTTTATTTGACACGAATTCCT
TCTTGTAGCTTTTTTCCCCAACAGAAGCACCGAGATGTTTATGCCCCTTT
GCTGTGATCTTTATAGACGTACCTTCGAATGTGTCGAGTGCCGTTTGATA
CATTTCAGGTTTTACTATCAACCATGACTTAATAGGTTCTGGGTAGTAGC
CGATAGTTGGACCGAGTTGCGTTAGGTCATCCCACCACTTGCGTAGTGCA
ACAAGTTTACCAGCACCAGTGATGTCGTCAGCGTACGCGACTTGTTTGGT
ATCTGGTACGTTTCGGAGGGGGTCGGTCAAGGGAAGCAAACATATGCCGT
AGAGAGCCATAGCGATCGGATCTCCTTGTGTTGTACCTTCAGAAGACGAC
AGCTCTGCTCCTCCAATCGCAAACAGACGGACGTGGTTCGAATAGCAGTT
GGTAGCAAACATCGCCAAGGTTGGACAAAGGATGTTAATGTTGTGCATCA
TAACTTCACGATTTATGCTGTTAAATGCATTTGAAGCGTCGACCAGTAGA
ACACCGTCTGTGTTCTCGTCGTTGTAGATGTCTGCCATCGCGTGCACTGC
AGCCTCACATCCACCCAGCTGACCAGCGCACAGTTGGAGATTGCCAGCTG
CTTCTTGTATTTCATTCCTCAGGAATGTTGTAACAGTCTTTCCAACGATG
CGTCTAAGAACTTCCCCGATGCCGATCGGTCGAATGCCGGGGTTCTTATC
C Coding sequence (CDS) from alignment at sc0001398:58558..59508 >TCONS_00035991 ID=TCONS_00035991|Name=TCONS_00035991|organism=Clytia hemisphaerica|type=CDS|length=948bp|location=Sequence derived from alignment at sc0001398:58558..59508 (Clytia hemisphaerica)
GATCTTCCTTTCAATATCGGAGCACTGTCTGCCATCACATATGGCTGGTA
TGAGGTGAAAATGGATGACATTTTCGATGGGTCGAAGCAATTCTGATATA
TTGTCTAGAGTTCGGATGATGTAGTTGAATTTTTGCCGGTAGCCAATAAC
GAAGGCGACATACGCAGCTTGGGGTTGAGTTATTGCAATGTCTGAcaaag
ttttgatttctttaaccCAGGTTTCGACTTTATTTGACACGAATTCCTTC
TTGTAGCTTTTTTCCCCAACAGAAGCACCGAGATGTTTATGCCCCTTTGC
TGTGATCTTTATAGACGTACCTTCGAATGTGTCGAGTGCCGTTTGATACA
TTTCAGGTTTTACTATCAACCATGACTTAATAGGTTCTGGGTAGTAGCCG
ATAGTTGGACCGAGTTGCGTTAGGTCATCCCACCACTTGCGTAGTGCAAC
AAGTTTACCAGCACCAGTGATGTCGTCAGCGTACGCGACTTGTTTGGTAT
CTGGTACGTTTCGGAGGGGGTCGGTCAAGGGAAGCAAACATATGCCGTAG
AGAGCCATAGCGATCGGATCTCCTTGTGTTGTACCTTCAGAAGACGACAG
CTCTGCTCCTCCAATCGCAAACAGACGGACGTGGTTCGAATAGCAGTTGG
TAGCAAACATCGCCAAGGTTGGACAAAGGATGTTAATGTTGTGCATCATA
ACTTCACGATTTATGCTGTTAAATGCATTTGAAGCGTCGACCAGTAGAAC
ACCGTCTGTGTTCTCGTCGTTGTAGATGTCTGCCATCGCGTGCACTGCAG
CCTCACATCCACCCAGCTGACCAGCGCACAGTTGGAGATTGCCAGCTGCT
TCTTGTATTTCATTCCTCAGGAATGTTGTAACAGTCTTTCCAACGATGCG
TCTAAGAACTTCCCCGATGCCGATCGGTCGAATGCCGGGGTTCTTATC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00035991-exon-sc0001398-1491911889:58558..59508 | TCONS_00035991-exon-sc0001398-1491911889:58558..59508 | Clytia hemisphaerica | exon |
| TCONS_00035991-exon-sc0001398-1510915933:58558..59508 | TCONS_00035991-exon-sc0001398-1510915933:58558..59508 | Clytia hemisphaerica | exon |
| TCONS_00035991-exon-sc0001398-1575043694:58558..59508 | TCONS_00035991-exon-sc0001398-1575043694:58558..59508 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001398 | supercontig | sc0001398:58558..59508 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000477 | RT_dom |
Blast
The following BLAST results are available for this feature:
|
