TCONS_00035990 (transcript) - C. hemisphaerica

Overview
NameTCONS_00035990
Unique NameTCONS_00035990
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length267

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00035990 ID=TCONS_00035990|Name=TCONS_00035990|organism=Clytia hemisphaerica|type=transcript|length=267bp
CGAAGAAGTTGAAGGATGACCAGTCAATAAACATTTTTCAGTAAAGGATT
GAGAACTTAAAGCAGTAGCGGTTGTCCAGAAGATAGAGCTTTATATAATT
GTCGAGAACGGTTTGAAGTTCAGCTCAGCGGTTGTGTGACATCAGGTTCT
TACTCAGGCTGGATTTGTACGTACAATATATAGTTGATGATGGAGAGCAG
AAATTGAATCTCGTTGCTTAGTTGTAGCAGTTGAAATTGGAAcaataaat
aaagatttcttcTGTTN
Run BLAST on NCBI

transcript from alignment at sc0001398:30970..31236

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00035990 ID=TCONS_00035990|Name=TCONS_00035990|organism=Clytia hemisphaerica|type=transcript|length=267bp|location=Sequence derived from alignment at sc0001398:30970..31236 (Clytia hemisphaerica)
NAACAgaagaaatctttatttattgTTCCAATTTCAACTGCTACAACTAA
GCAACGAGATTCAATTTCTGCTCTCCATCATCAACTATATATTGTACGTA
CAAATCCAGCCTGAGTAAGAACCTGATGTCACACAACCGCTGAGCTGAAC
TTCAAACCGTTCTCGACAATTATATAAAGCTCTATCTTCTGGACAACCGC
TACTGCTTTAAGTTCTCAATCCTTTACTGAAAAATGTTTATTGACTGGTC
ATCCTTCAACTTCTTCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021147XLOC_021147Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035990-exon-sc0001398-1491911889:30970..31236TCONS_00035990-exon-sc0001398-1491911889:30970..31236Clytia hemisphaericaexon
TCONS_00035990-exon-sc0001398-1510915933:30970..31236TCONS_00035990-exon-sc0001398-1510915933:30970..31236Clytia hemisphaericaexon
TCONS_00035990-exon-sc0001398-1575043694:30970..31236TCONS_00035990-exon-sc0001398-1575043694:30970..31236Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001398supercontigsc0001398:30970..31236 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.921221	3.81336	4.45328	0.911244	4.05717	2.11966	5.29641	5.54796	0.687831	0	0.0836529	5.05733	12.7829	5.15167	2.92656	1.52815	3.43339	3.92199	2.93996	3.91347	16.5929	16.634	5.61327	13.409	2.59235	7.85599	16.6289	8.51603	23.2192	17.575
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00035990 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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