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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00035988 ID=TCONS_00035988|Name=TCONS_00035988|organism=Clytia hemisphaerica|type=transcript|length=1396bp
ATCAAAGACTGTTACAATGAGGAGATCAAATAGAATTGCAGGTCAACAAC
CAGCTGAAGATCCACAGATGTATGAGCTAAACAAACTCGTATCATTACGA
AATTCCAGAAGAGCCCAGCTTTCTAGCCTCACAAGAGTCATTAACCAAAT
TCTCATTTGTCTCAACGAAGGAGATGTTCAAAATGCGTTTGTGTTACAAG
AGACTATGTTGACAACGTACCTCAAGTTTAGAGCTACAAACACAGAATAC
ATGTCAATGGAAACTGATCCAAAGAAGATCCAGGAGTGTGAAGATAGCGA
AAGAAGGGAGTCGAACCGGATAACTGAAGTTGAAAGGGAAATTCGTGGCA
GAACACGAGCATCAAGTGGAAACAGTGCTCAAAGTGAATACGCTGGAAGT
TGTGGTAGTGGTGGATCTGGTTATCATTCACCAAGCTACTTCAATGGAAG
AAGTTCCAGTCCAAGATCAGAGAATATCCAGAATTTCAGATTTCCCAACC
CATCCCCACCATCGGTATCTTCTGTGACAGCGAAGTCCCGCAGCAGCTTT
CGCCGATTAAGGCAGATACCATCAAAAGTAGCCTTTTCAGATAGCTTGAG
TCAATCTTCTGGTACATATGTCACCCAAAATCCAACTGCTGCTACAAAAC
CTCAAAAAATGTTCTTGCAGTCTATTGATAACTTCATTGATGATTTGGTT
GAGGGAGAAGAGACTTGTCTTGCTGGTCTATCCAACCCTGTCACTGCTAG
CGCAGCACTTCGCTATGAGTTTGAAAGTAAGACGTTACCAATTATCGAGC
TAACTAAATTCAATGGAGATAGTGCCAAATGGCCTGAATTCATCGAAAAC
TTCAGTCGAAGAGTTCACTTCAAGTTGTCATTCACGGACAATGATCGGAT
AGAGAGACTGCTGAGTGTCCTCACAGGAGAAGCAAGAAAAGGTGTTGAGT
GCATTGGGACATCAGGAATATTCTACGCCACCGCTTTGAAGTCATTAAAG
AGAGACTTTGGCAATGCTACAGTGGTAACCCATGCCAAACTAAAACTTCT
GCTGGATAAACCTCAACTGGTGTCAAATGATAGAGCAGCTTTGAAAAGGT
TCCACCAACAATTAAAATCCACCTTGACTTGGTTAAAAAGGATTGGCAAT
ATTTCCGCCATTCACTCAACGGAAAACTTGTCGAAGGCGGTCATTAGGTT
GCCAGACAACCTGAGGAAGAACTTTTACAAGAAATCAAAGGACTTCGATG
ACACTGATCTAAGTCTGTTTAAGCTTGAAACATTCTTAGATGCCACGTTA
AAGGAATTCTACAATCCAATAGCAGATATAATTGCAACTCAAGAAAACAA
GAGGAGAGATAAGAAAGGTGGCAACAAGGAAAGCCAAAACAACTAC Run BLAST on NCBI protein sequence of TCONS_00035988-protein >TCONS_00035988-protein ID=TCONS_00035988-protein|Name=TCONS_00035988-protein|organism=Clytia hemisphaerica|type=polypeptide|length=465bp
SKTVTMRRSNRIAGQQPAEDPQMYELNKLVSLRNSRRAQLSSLTRVINQI
LICLNEGDVQNAFVLQETMLTTYLKFRATNTEYMSMETDPKKIQECEDSE
RRESNRITEVEREIRGRTRASSGNSAQSEYAGSCGSGGSGYHSPSYFNGR
SSSPRSENIQNFRFPNPSPPSVSSVTAKSRSSFRRLRQIPSKVAFSDSLS
QSSGTYVTQNPTAATKPQKMFLQSIDNFIDDLVEGEETCLAGLSNPVTAS
AALRYEFESKTLPIIELTKFNGDSAKWPEFIENFSRRVHFKLSFTDNDRI
ERLLSVLTGEARKGVECIGTSGIFYATALKSLKRDFGNATVVTHAKLKLL
LDKPQLVSNDRAALKRFHQQLKSTLTWLKRIGNISAIHSTENLSKAVIRL
PDNLRKNFYKKSKDFDDTDLSLFKLETFLDATLKEFYNPIADIIATQENK
RRDKKGGNKESQNNY Run BLAST on NCBI transcript from alignment at sc0001398:6862..8257 Legend: exonCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00035988 ID=TCONS_00035988|Name=TCONS_00035988|organism=Clytia hemisphaerica|type=transcript|length=1396bp|location=Sequence derived from alignment at sc0001398:6862..8257 (Clytia hemisphaerica)
GTAGTTGTTTTGGCTTTCCTTGTTGCCACCTTTCTTATCTCTCCTCTTGT
TTTCTTGAGTTGCAATTATATCTGCTATTGGATTGTAGAATTCCTTTAAC
GTGGCATCTAAGAATGTTTCAAGCTTAAACAGACTTAGATCAGTGTCATC
GAAGTCCTTTGATTTCTTGTAAAAGTTCTTCCTCAGGTTGTCTGGCAACC
TAATGACCGCCTTCGACAAGTTTTCCGTTGAGTGAATGGCGGAAATATTG
CCAATCCTTTTTAACCAAGTCAAGGTGGATTTTAATTGTTGGTGGAACCT
TTTCAAAGCTGCTCTATCATTTGACACCAGTTGAGGTTTATCCAGCAGAA
GTTTTAGTTTGGCATGGGTTACCACTGTAGCATTGCCAAAGTCTCTCTTT
AATGACTTCAAAGCGGTGGCGTAGAATATTCCTGATGTCCCAATGCACTC
AACACCTTTTCTTGCTTCTCCTGTGAGGACACTCAGCAGTCTCTCTATCC
GATCATTGTCCGTGAATGACAACTTGAAGTGAACTCTTCGACTGAAGTTT
TCGATGAATTCAGGCCATTTGGCACTATCTCCATTGAATTTAGTTAGCTC
GATAATTGGTAACGTCTTACTTTCAAACTCATAGCGAAGTGCTGCGCTAG
CAGTGACAGGGTTGGATAGACCAGCAAGACAAGTCTCTTCTCCCTCAACC
AAATCATCAATGAAGTTATCAATAGACTGCAAGAACATTTTTTGAGGTTT
TGTAGCAGCAGTTGGATTTTGGGTGACATATGTACCAGAAGATTGACTCA
AGCTATCTGAAAAGGCTACTTTTGATGGTATCTGCCTTAATCGGCGAAAG
CTGCTGCGGGACTTCGCTGTCACAGAAGATACCGATGGTGGGGATGGGTT
GGGAAATCTGAAATTCTGGATATTCTCTGATCTTGGACTGGAACTTCTTC
CATTGAAGTAGCTTGGTGAATGATAACCAGATCCACCACTACCACAACTT
CCAGCGTATTCACTTTGAGCACTGTTTCCACTTGATGCTCGTGTTCTGCC
ACGAATTTCCCTTTCAACTTCAGTTATCCGGTTCGACTCCCTTCTTTCGC
TATCTTCACACTCCTGGATCTTCTTTGGATCAGTTTCCATTGACATGTAT
TCTGTGTTTGTAGCTCTAAACTTGAGGTACGTTGTCAACATAGTCTCTTG
TAACACAAACGCATTTTGAACATCTCCTTCGTTGAGACAAATGAGAATTT
GGTTAATGACTCTTGTGAGGCTAGAAAGCTGGGCTCTTCTGGAATTTCGT
AATGATACGAGTTTGTTTAGCTCATACATCTGTGGATCTTCAGCTGGTTG
TTGACCTGCAATTCTATTTGATCTCCTCATTGTAACAGTCTTTGAT Coding sequence (CDS) from alignment at sc0001398:6862..8257 >TCONS_00035988 ID=TCONS_00035988|Name=TCONS_00035988|organism=Clytia hemisphaerica|type=CDS|length=1395bp|location=Sequence derived from alignment at sc0001398:6862..8257 (Clytia hemisphaerica)
GTAGTTGTTTTGGCTTTCCTTGTTGCCACCTTTCTTATCTCTCCTCTTGT
TTTCTTGAGTTGCAATTATATCTGCTATTGGATTGTAGAATTCCTTTAAC
GTGGCATCTAAGAATGTTTCAAGCTTAAACAGACTTAGATCAGTGTCATC
GAAGTCCTTTGATTTCTTGTAAAAGTTCTTCCTCAGGTTGTCTGGCAACC
TAATGACCGCCTTCGACAAGTTTTCCGTTGAGTGAATGGCGGAAATATTG
CCAATCCTTTTTAACCAAGTCAAGGTGGATTTTAATTGTTGGTGGAACCT
TTTCAAAGCTGCTCTATCATTTGACACCAGTTGAGGTTTATCCAGCAGAA
GTTTTAGTTTGGCATGGGTTACCACTGTAGCATTGCCAAAGTCTCTCTTT
AATGACTTCAAAGCGGTGGCGTAGAATATTCCTGATGTCCCAATGCACTC
AACACCTTTTCTTGCTTCTCCTGTGAGGACACTCAGCAGTCTCTCTATCC
GATCATTGTCCGTGAATGACAACTTGAAGTGAACTCTTCGACTGAAGTTT
TCGATGAATTCAGGCCATTTGGCACTATCTCCATTGAATTTAGTTAGCTC
GATAATTGGTAACGTCTTACTTTCAAACTCATAGCGAAGTGCTGCGCTAG
CAGTGACAGGGTTGGATAGACCAGCAAGACAAGTCTCTTCTCCCTCAACC
AAATCATCAATGAAGTTATCAATAGACTGCAAGAACATTTTTTGAGGTTT
TGTAGCAGCAGTTGGATTTTGGGTGACATATGTACCAGAAGATTGACTCA
AGCTATCTGAAAAGGCTACTTTTGATGGTATCTGCCTTAATCGGCGAAAG
CTGCTGCGGGACTTCGCTGTCACAGAAGATACCGATGGTGGGGATGGGTT
GGGAAATCTGAAATTCTGGATATTCTCTGATCTTGGACTGGAACTTCTTC
CATTGAAGTAGCTTGGTGAATGATAACCAGATCCACCACTACCACAACTT
CCAGCGTATTCACTTTGAGCACTGTTTCCACTTGATGCTCGTGTTCTGCC
ACGAATTTCCCTTTCAACTTCAGTTATCCGGTTCGACTCCCTTCTTTCGC
TATCTTCACACTCCTGGATCTTCTTTGGATCAGTTTCCATTGACATGTAT
TCTGTGTTTGTAGCTCTAAACTTGAGGTACGTTGTCAACATAGTCTCTTG
TAACACAAACGCATTTTGAACATCTCCTTCGTTGAGACAAATGAGAATTT
GGTTAATGACTCTTGTGAGGCTAGAAAGCTGGGCTCTTCTGGAATTTCGT
AATGATACGAGTTTGTTTAGCTCATACATCTGTGGATCTTCAGCTGGTTG
TTGACCTGCAATTCTATTTGATCTCCTCATTGTAACAGTCTTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00035988-exon-sc0001398-1491911889:6862..8257 | TCONS_00035988-exon-sc0001398-1491911889:6862..8257 | Clytia hemisphaerica | exon |
| TCONS_00035988-exon-sc0001398-1510915933:6862..8257 | TCONS_00035988-exon-sc0001398-1510915933:6862..8257 | Clytia hemisphaerica | exon |
| TCONS_00035988-exon-sc0001398-1575043694:6862..8257 | TCONS_00035988-exon-sc0001398-1575043694:6862..8257 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001398 | supercontig | sc0001398:6862..8257 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR005312 | DUF1759 |
Blast
The following BLAST results are available for this feature:
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