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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00035986 ID=TCONS_00035986|Name=TCONS_00035986|organism=Clytia hemisphaerica|type=transcript|length=1078bp
ATCATCTGAAGGACATATCGATTGTCCAGCCTCTCAAGGGAGATGTTGAA
GTTCTCATTGGTGCAGACACTCCGGAGGCCTTGCTTCACCTTGATTTTGT
caaaggaaaatcgaaaaacgaTCCAATGGCGGTAAAAACTATCTTTGGTT
GGACACTCTTTGGAGGACGATCTTCTGAAAAATCTGTAACCGCAAACTTC
CTATCTTTTGAGAAACTGGAGGCGAGTGTTGAAAGGTTTTGGCAACAAGA
GTCTTATGCAACCACATCAATGTTATCACCTGCTCTCTTGACGAAGGATG
AGAGAAGAGCTCTCAAACTTCTCGAAAACGGTACCAATTTCGTCGAAGGA
AGGTGTGAAGTTGGAATGTTGTGGAGAAAGGACAAAGTTCAGCTCGAGAA
CAATCGATTCCTAGCTGAGAAAAGGCTCCTATCAACAGAGAAACGTCTTG
AGAAATTTCCAGAGATCAAAGAAATCTACCACTCAAAGATTGAAGAGTAC
ATCACTTTGGGAGATTGAGAAATTGTCAGATACAGAGGCGAAGTCAGTTT
CGAACAAAATTAACTACATCCCGCATCACTTTGTCCTGGAACCAAGGAAA
CCAGGAAAAATTAGAATCGTGTTCGATGCTTCCTCAAATTTCAAAGGCAC
TTCCCTCAACAAAAGTTTGCTACCTGGTCCGAACCTGCTCAATAATCTTG
TCACCGTACTTTCGAGGTTCAGAAGAGGTCAAGTAGCAGTCATCAGTGAT
ATTGAGAAAATGTATCACCAAGTCTTAGTTCCAGAAGAGGATCAAGATGC
ACTCCGCTTTCTCTGGAGGGATAAACCTCCAGACCCTATCACGGAATATA
AAATGCAGGTTCATCTTTTCGGTAAGATCGACTCTCCATGTTGTGCCAAT
TGGGCGTTACGAAGCAGCATCACCCGTGTGGAAGGTAAATAGGTTCAAGC
ATTCAAAGATCTATCAGAGGAGAATAAAAATAGAGTAACGGAAGCAGTGA
CTGAGGAATTTTACATGGACGATTTCCTGAGCTCGTTTGACAACACCAAG
GATGCAGTAGAGACTTGTTTTAATGTCG Run BLAST on NCBI protein sequence of TCONS_00035986-protein >TCONS_00035986-protein ID=TCONS_00035986-protein|Name=TCONS_00035986-protein|organism=Clytia hemisphaerica|type=polypeptide|length=171bp
HLKDISIVQPLKGDVEVLIGADTPEALLHLDFVKGKSKNDPMAVKTIFGW
TLFGGRSSEKSVTANFLSFEKLEASVERFWQQESYATTSMLSPALLTKDE
RRALKLLENGTNFVEGRCEVGMLWRKDKVQLENNRFLAEKRLLSTEKRLE
KFPEIKEIYHSKIEEYITLGD Run BLAST on NCBI transcript from alignment at sc0001398:4871..5948 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00035986 ID=TCONS_00035986|Name=TCONS_00035986|organism=Clytia hemisphaerica|type=transcript|length=1078bp|location=Sequence derived from alignment at sc0001398:4871..5948 (Clytia hemisphaerica)
CGACATTAAAACAAGTCTCTACTGCATCCTTGGTGTTGTCAAACGAGCTC
AGGAAATCGTCCATGTAAAATTCCTCAGTCACTGCTTCCGTTACTCTATT
TTTATTCTCCTCTGATAGATCTTTGAATGCTTGAACCTATTTACCTTCCA
CACGGGTGATGCTGCTTCGTAACGCCCAATTGGCACAACATGGAGAGTCG
ATCTTACCGAAAAGATGAACCTGCATTTTATATTCCGTGATAGGGTCTGG
AGGTTTATCCCTCCAGAGAAAGCGGAGTGCATCTTGATCCTCTTCTGGAA
CTAAGACTTGGTGATACATTTTCTCAATATCACTGATGACTGCTACTTGA
CCTCTTCTGAACCTCGAAAGTACGGTGACAAGATTATTGAGCAGGTTCGG
ACCAGGTAGCAAACTTTTGTTGAGGGAAGTGCCTTTGAAATTTGAGGAAG
CATCGAACACGATTCTAATTTTTCCTGGTTTCCTTGGTTCCAGGACAAAG
TGATGCGGGATGTAGTTAATTTTGTTCGAAACTGACTTCGCCTCTGTATC
TGACAATTTCTCAATCTCCCAAAGTGATGTACTCTTCAATCTTTGAGTGG
TAGATTTCTTTGATCTCTGGAAATTTCTCAAGACGTTTCTCTGTTGATAG
GAGCCTTTTCTCAGCTAGGAATCGATTGTTCTCGAGCTGAACTTTGTCCT
TTCTCCACAACATTCCAACTTCACACCTTCCTTCGACGAAATTGGTACCG
TTTTCGAGAAGTTTGAGAGCTCTTCTCTCATCCTTCGTCAAGAGAGCAGG
TGATAACATTGATGTGGTTGCATAAGACTCTTGTTGCCAAAACCTTTCAA
CACTCGCCTCCAGTTTCTCAAAAGATAGGAAGTTTGCGGTTACAGATTTT
TCAGAAGATCGTCCTCCAAAGAGTGTCCAACCAAAGATAGTTTTTACCGC
CATTGGAtcgtttttcgattttcctttgACAAAATCAAGGTGAAGCAAGG
CCTCCGGAGTGTCTGCACCAATGAGAACTTCAACATCTCCCTTGAGAGGC
TGGACAATCGATATGTCCTTCAGATGAT Coding sequence (CDS) from alignment at sc0001398:4871..5948 >TCONS_00035986 ID=TCONS_00035986|Name=TCONS_00035986|organism=Clytia hemisphaerica|type=CDS|length=516bp|location=Sequence derived from alignment at sc0001398:4871..5948 (Clytia hemisphaerica)
TCAATCTCCCAAAGTGATGTACTCTTCAATCTTTGAGTGGTAGATTTCTT
TGATCTCTGGAAATTTCTCAAGACGTTTCTCTGTTGATAGGAGCCTTTTC
TCAGCTAGGAATCGATTGTTCTCGAGCTGAACTTTGTCCTTTCTCCACAA
CATTCCAACTTCACACCTTCCTTCGACGAAATTGGTACCGTTTTCGAGAA
GTTTGAGAGCTCTTCTCTCATCCTTCGTCAAGAGAGCAGGTGATAACATT
GATGTGGTTGCATAAGACTCTTGTTGCCAAAACCTTTCAACACTCGCCTC
CAGTTTCTCAAAAGATAGGAAGTTTGCGGTTACAGATTTTTCAGAAGATC
GTCCTCCAAAGAGTGTCCAACCAAAGATAGTTTTTACCGCCATTGGAtcg
tttttcgattttcctttgACAAAATCAAGGTGAAGCAAGGCCTCCGGAGT
GTCTGCACCAATGAGAACTTCAACATCTCCCTTGAGAGGCTGGACAATCG
ATATGTCCTTCAGATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00035986-exon-sc0001398-1491911889:4871..5948 | TCONS_00035986-exon-sc0001398-1491911889:4871..5948 | Clytia hemisphaerica | exon |
| TCONS_00035986-exon-sc0001398-1510915933:4871..5948 | TCONS_00035986-exon-sc0001398-1510915933:4871..5948 | Clytia hemisphaerica | exon |
| TCONS_00035986-exon-sc0001398-1575043694:4871..5948 | TCONS_00035986-exon-sc0001398-1575043694:4871..5948 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001398 | supercontig | sc0001398:4871..5948 . |
Blast
The following BLAST results are available for this feature:
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