TCONS_00035985 (transcript) - C. hemisphaerica

Overview
NameTCONS_00035985
Unique NameTCONS_00035985
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length712

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00035985 ID=TCONS_00035985|Name=TCONS_00035985|organism=Clytia hemisphaerica|type=transcript|length=712bp
CATCATCCGACATACACATGAGAAACATCATCACATCGGAAGAAACGCAA
CATTGTCCATCCTGAGGGAGAAATTTTGGATCACAGCCGCAAAATCAAAG
GTGAGACAGATATTAACGAAATGCTTCTTCTGCAAAAAGGAGAGTGTCAA
GACGAAACATCCACTGATGGCTGACTCACCACTTGAAAGAATTGATTCCA
GATGTCACGCATTCCAAAATGTCGGAGTGGACTACTTTGGTCCAATGCTA
ATCAAACAAGGAAGACGAACCAGAAGAACCACTGGTGCAGCAAAGAGATA
CGGTGCATTGTTCACTTGCATGACGACACGAAGTATACATCTCGAGCTAG
CAGGTGACATGTCCACTGATAGTTTTATCCTATCACTTAGAAGATTCAGG
GCAAGAAGGGGTAACCCCAGGGTTATCCGAAGTGACAACGGGACTAATTT
TGTGGGGGCAGAGAGAGAATTAAGGGAGGCACTCGAGAAATTAGACCAGA
AAAGGATTACTAATGAACTTTCAGCAAACAACATCGAATGGAAGTTCAAC
CCACCCGTCGCGCCATGGATGGGTGGTGCCATGGAGTCCATGGTCAAGCT
GACAAAAAGAGCACTGAGGGCAACGGTGGGTGACAGAATGTTTAATGAGG
AGGCTTTACACACCTTATTACTTGAGGTagagtcaaccctcaattcccGA
CCAATTACACCT
Run BLAST on NCBI

protein sequence of TCONS_00035985-protein

>TCONS_00035985-protein ID=TCONS_00035985-protein|Name=TCONS_00035985-protein|organism=Clytia hemisphaerica|type=polypeptide|length=237bp
IIRHTHEKHHHIGRNATLSILREKFWITAAKSKVRQILTKCFFCKKESVK
TKHPLMADSPLERIDSRCHAFQNVGVDYFGPMLIKQGRRTRRTTGAAKRY
GALFTCMTTRSIHLELAGDMSTDSFILSLRRFRARRGNPRVIRSDNGTNF
VGAERELREALEKLDQKRITNELSANNIEWKFNPPVAPWMGGAMESMVKL
TKRALRATVGDRMFNEEALHTLLLEVESTLNSRPITP
Run BLAST on NCBI

transcript from alignment at sc0001398:2994..3705

Legend: exonCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00035985 ID=TCONS_00035985|Name=TCONS_00035985|organism=Clytia hemisphaerica|type=transcript|length=712bp|location=Sequence derived from alignment at sc0001398:2994..3705 (Clytia hemisphaerica)
AGGTGTAATTGGTCgggaattgagggttgactctACCTCAAGTAATAAGG
TGTGTAAAGCCTCCTCATTAAACATTCTGTCACCCACCGTTGCCCTCAGT
GCTCTTTTTGTCAGCTTGACCATGGACTCCATGGCACCACCCATCCATGG
CGCGACGGGTGGGTTGAACTTCCATTCGATGTTGTTTGCTGAAAGTTCAT
TAGTAATCCTTTTCTGGTCTAATTTCTCGAGTGCCTCCCTTAATTCTCTC
TCTGCCCCCACAAAATTAGTCCCGTTGTCACTTCGGATAACCCTGGGGTT
ACCCCTTCTTGCCCTGAATCTTCTAAGTGATAGGATAAAACTATCAGTGG
ACATGTCACCTGCTAGCTCGAGATGTATACTTCGTGTCGTCATGCAAGTG
AACAATGCACCGTATCTCTTTGCTGCACCAGTGGTTCTTCTGGTTCGTCT
TCCTTGTTTGATTAGCATTGGACCAAAGTAGTCCACTCCGACATTTTGGA
ATGCGTGACATCTGGAATCAATTCTTTCAAGTGGTGAGTCAGCCATCAGT
GGATGTTTCGTCTTGACACTCTCCTTTTTGCAGAAGAAGCATTTCGTTAA
TATCTGTCTCACCTTTGATTTTGCGGCTGTGATCCAAAATTTCTCCCTCA
GGATGGACAATGTTGCGTTTCTTCCGATGTGATGATGTTTCTCATGTGTA
TGTCGGATGATG

Coding sequence (CDS) from alignment at sc0001398:2994..3705

>TCONS_00035985 ID=TCONS_00035985|Name=TCONS_00035985|organism=Clytia hemisphaerica|type=CDS|length=711bp|location=Sequence derived from alignment at sc0001398:2994..3705 (Clytia hemisphaerica)
AGGTGTAATTGGTCgggaattgagggttgactctACCTCAAGTAATAAGG
TGTGTAAAGCCTCCTCATTAAACATTCTGTCACCCACCGTTGCCCTCAGT
GCTCTTTTTGTCAGCTTGACCATGGACTCCATGGCACCACCCATCCATGG
CGCGACGGGTGGGTTGAACTTCCATTCGATGTTGTTTGCTGAAAGTTCAT
TAGTAATCCTTTTCTGGTCTAATTTCTCGAGTGCCTCCCTTAATTCTCTC
TCTGCCCCCACAAAATTAGTCCCGTTGTCACTTCGGATAACCCTGGGGTT
ACCCCTTCTTGCCCTGAATCTTCTAAGTGATAGGATAAAACTATCAGTGG
ACATGTCACCTGCTAGCTCGAGATGTATACTTCGTGTCGTCATGCAAGTG
AACAATGCACCGTATCTCTTTGCTGCACCAGTGGTTCTTCTGGTTCGTCT
TCCTTGTTTGATTAGCATTGGACCAAAGTAGTCCACTCCGACATTTTGGA
ATGCGTGACATCTGGAATCAATTCTTTCAAGTGGTGAGTCAGCCATCAGT
GGATGTTTCGTCTTGACACTCTCCTTTTTGCAGAAGAAGCATTTCGTTAA
TATCTGTCTCACCTTTGATTTTGCGGCTGTGATCCAAAATTTCTCCCTCA
GGATGGACAATGTTGCGTTTCTTCCGATGTGATGATGTTTCTCATGTGTA
TGTCGGATGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021142XLOC_021142Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035985-exon-sc0001398-1491911889:2994..3705TCONS_00035985-exon-sc0001398-1491911889:2994..3705Clytia hemisphaericaexon
TCONS_00035985-exon-sc0001398-1510915933:2994..3705TCONS_00035985-exon-sc0001398-1510915933:2994..3705Clytia hemisphaericaexon
TCONS_00035985-exon-sc0001398-1575043694:2994..3705TCONS_00035985-exon-sc0001398-1575043694:2994..3705Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035985-proteinTCONS_00035985-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001398supercontigsc0001398:2994..3705 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.231725	0.4559	0.703494	1.89662	2.45851	2.45213	1.97528	1.43218	2.44225	0.639826	1.70642	0.330241	0.796175	0.0875966	0.290709	0.0965997	0.600619	0.484788	0.634144	0.190504	0.408361	0.13552	0.394763	0.226652	0	0.520958	0.103216	0.276006	0.211529
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001584Integrase_cat-core
IPR012337RNaseH-like_dom
Vocabulary: Biological Process
TermDefinition
GO:0015074DNA integration
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
molecular_function GO:0003676 nucleic acid binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00035985 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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