TCONS_00035983 (transcript) - C. hemisphaerica

Overview
NameTCONS_00035983
Unique NameTCONS_00035983
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length436

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00035983 ID=TCONS_00035983|Name=TCONS_00035983|organism=Clytia hemisphaerica|type=transcript|length=436bp
gagaaaattaaaactgaagtaaaaaaaacatttagttttcagttttcatt
atttcatcaCAGATTGAGGAGTGTCGGGGTGGAGGATGGGGGAGGGGGTA
GTCAAAAACAAATTATACACACAAACTCAATCATAATATACATATTAACA
AATTTCATATATACAATTTAGAAATTTAAGGACATacaattttagaaatt
taagaacataGATTTATATTTTTAGTTATCATTCAGAAAAATCTCGAATC
TAAGATTTTGGAAGGAGAttaacaaaaatagaaaagtgaTCACTGTAAGG
AGATGGCATCCATTTGGCAGGGTTGTTGTAATTGTCGTCAAAAATGAGAT
CTAAGATATTTCCGTCTATGTGGGTGGGGTATTGACAGCGTTGATGAAAA
ATGTTTGGTGGCAAAACTTCATTTAGGTCATTTCTG
Run BLAST on NCBI

transcript from alignment at sc0001397:32411..32846

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00035983 ID=TCONS_00035983|Name=TCONS_00035983|organism=Clytia hemisphaerica|type=transcript|length=436bp|location=Sequence derived from alignment at sc0001397:32411..32846 (Clytia hemisphaerica)
CAGAAATGACCTAAATGAAGTTTTGCCACCAAACATTTTTCATCAACGCT
GTCAATACCCCACCCACATAGACGGAAATATCTTAGATCTCATTTTTGAC
GACAATTACAACAACCCTGCCAAATGGATGCCATCTCCTTACAGTGAtca
cttttctatttttgttaaTCTCCTTCCAAAATCTTAGATTCGAGATTTTT
CTGAATGATAACTAAAAATATAAATCtatgttcttaaatttctaaaattg
tATGTCCTTAAATTTCTAAATTGTATATATGAAATTTGTTAATATGTATA
TTATGATTGAGTTTGTGTGTATAATTTGTTTTTGACTACCCCCTCCCCCA
TCCTCCACCCCGACACTCCTCAATCTGtgatgaaataatgaaaactgaaa
actaaatgttttttttacttcagttttaattttctc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021140XLOC_021140Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035983-exon-sc0001397-1491911889:32411..32846TCONS_00035983-exon-sc0001397-1491911889:32411..32846Clytia hemisphaericaexon
TCONS_00035983-exon-sc0001397-1510915933:32411..32846TCONS_00035983-exon-sc0001397-1510915933:32411..32846Clytia hemisphaericaexon
TCONS_00035983-exon-sc0001397-1575043694:32411..32846TCONS_00035983-exon-sc0001397-1575043694:32411..32846Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001397supercontigsc0001397:32411..32846 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.314148	0.305822	0	1.04516	0	0.333099	0.402494	0	0.263405	0	0	0.104233	0.104049	0	0.0887464	0.476608	0	0.12083	0.664557	0	0.456396	0.444321	0.358397	0	0	0	0.432098	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00035983 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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