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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00035977 ID=TCONS_00035977|Name=TCONS_00035977|organism=Clytia hemisphaerica|type=transcript|length=920bp
CGGCCACTGAATCTGATTGAGGCAACCCGTGGCCAGGACAGGTGTGGATT
CTGTGCCTGCGACCGATCGAGCTTGTACGTATCGACAGCTCATAAAGAAT
TCAACTGCGTTGTCAGTTAAGAAATACACAAAGCTGCGTTGTCAGCTCAA
AAAGAATTCAACTGTGTTGTCAGTTATCAAATACACAAAGCTGCATTGTC
AGCAAGTATATATTTAATTTATCCTcacaagaaaattttattttaccagA
TAGACTTTGTCATATATTTAGTTAAAGTTAGTTTTTCTATCTGTGACTGT
ACTCTGTACTTAAGTGAAGATGATATCTGTTGCATTATATCGTGCACGCA
TAGGAAGTTTTGCTTTTACAGCTCAGAGAAACGTTAAATGTGTCGCTAAA
TCTATTATTGTTGGTTCCAATCTTTCCAATAATGTattctcaaaactttt
taaacctGTACGTTTCATAGCACTTTTCACGCTCCTATGTTTTGCAATTC
CAAAATCGTTTGAGCTAACAGAGCTTTACACACCTCTAGATTTTCTCTAT
CTTTCAAGAAATGGAATTTTCGTTCAATATCCCAATGTAGCGGGAGATCC
AAACcttacttttttcaaagttaATTACACACTCCTATTATCAGGCGATG
TAGAACTTAACCCAGGTCCAAATGTTCAAGGTTCATTTCATCAGGGCAAC
GGTAAATTTGGTGAGACAGCGGGTATACAATGTtcctcaaattgtttttt
tgctatttgctATGCCAAGTTTAGAAGATTATCACTATGGAAGAGTCATG
ATTTGGATTATGTTTTAGACCAAggtgattttaattttaaaaagttgggt
ATTAAAGGGCAGTCCCCATATATTGAGCAGTTTTCTAAGACCATTGATAT
AGGAGAAAGCACTTGTGCAC Run BLAST on NCBI protein sequence of TCONS_00035977-protein >TCONS_00035977-protein ID=TCONS_00035977-protein|Name=TCONS_00035977-protein|organism=Clytia hemisphaerica|type=polypeptide|length=200bp
MISVALYRARIGSFAFTAQRNVKCVAKSIIVGSNLSNNVFSKLFKPVRFI
ALFTLLCFAIPKSFELTELYTPLDFLYLSRNGIFVQYPNVAGDPNLTFFK
VNYTLLLSGDVELNPGPNVQGSFHQGNGKFGETAGIQCSSNCFFAICYAK
FRRLSLWKSHDLDYVLDQGDFNFKKLGIKGQSPYIEQFSKTIDIGESTCA Run BLAST on NCBI transcript from alignment at sc0001396:18868..19787 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00035977 ID=TCONS_00035977|Name=TCONS_00035977|organism=Clytia hemisphaerica|type=transcript|length=920bp|location=Sequence derived from alignment at sc0001396:18868..19787 (Clytia hemisphaerica)
GTGCACAAGTGCTTTCTCCTATATCAATGGTCTTAGAAAACTGCTCAATA
TATGGGGACTGCCCTTTAATacccaactttttaaaattaaaatcaccTTG
GTCTAAAACATAATCCAAATCATGACTCTTCCATAGTGATAATCTTCTAA
ACTTGGCATagcaaatagcaaaaaaacaatttgaggaACATTGTATACCC
GCTGTCTCACCAAATTTACCGTTGCCCTGATGAAATGAACCTTGAACATT
TGGACCTGGGTTAAGTTCTACATCGCCTGATAATAGGAGTGTGTAATtaa
ctttgaaaaaagtaagGTTTGGATCTCCCGCTACATTGGGATATTGAACG
AAAATTCCATTTCTTGAAAGATAGAGAAAATCTAGAGGTGTGTAAAGCTC
TGTTAGCTCAAACGATTTTGGAATTGCAAAACATAGGAGCGTGAAAAGTG
CTATGAAACGTACaggtttaaaaagttttgagaatACATTATTGGAAAGA
TTGGAACCAACAATAATAGATTTAGCGACACATTTAACGTTTCTCTGAGC
TGTAAAAGCAAAACTTCCTATGCGTGCACGATATAATGCAACAGATATCA
TCTTCACTTAAGTACAGAGTACAGTCACAGATAGAAAAACTAACTTTAAC
TAAATATATGACAAAGTCTATctggtaaaataaaattttcttgtgAGGAT
AAATTAAATATATACTTGCTGACAATGCAGCTTTGTGTATTTGATAACTG
ACAACACAGTTGAATTCTTTTTGAGCTGACAACGCAGCTTTGTGTATTTC
TTAACTGACAACGCAGTTGAATTCTTTATGAGCTGTCGATACGTACAAGC
TCGATCGGTCGCAGGCACAGAATCCACACCTGTCCTGGCCACGGGTTGCC
TCAATCAGATTCAGTGGCCG Coding sequence (CDS) from alignment at sc0001396:18868..19787 >TCONS_00035977 ID=TCONS_00035977|Name=TCONS_00035977|organism=Clytia hemisphaerica|type=CDS|length=600bp|location=Sequence derived from alignment at sc0001396:18868..19787 (Clytia hemisphaerica)
TGCACAAGTGCTTTCTCCTATATCAATGGTCTTAGAAAACTGCTCAATAT
ATGGGGACTGCCCTTTAATacccaactttttaaaattaaaatcaccTTGG
TCTAAAACATAATCCAAATCATGACTCTTCCATAGTGATAATCTTCTAAA
CTTGGCATagcaaatagcaaaaaaacaatttgaggaACATTGTATACCCG
CTGTCTCACCAAATTTACCGTTGCCCTGATGAAATGAACCTTGAACATTT
GGACCTGGGTTAAGTTCTACATCGCCTGATAATAGGAGTGTGTAATtaac
tttgaaaaaagtaagGTTTGGATCTCCCGCTACATTGGGATATTGAACGA
AAATTCCATTTCTTGAAAGATAGAGAAAATCTAGAGGTGTGTAAAGCTCT
GTTAGCTCAAACGATTTTGGAATTGCAAAACATAGGAGCGTGAAAAGTGC
TATGAAACGTACaggtttaaaaagttttgagaatACATTATTGGAAAGAT
TGGAACCAACAATAATAGATTTAGCGACACATTTAACGTTTCTCTGAGCT
GTAAAAGCAAAACTTCCTATGCGTGCACGATATAATGCAACAGATATCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00035977-exon-sc0001396-1491911889:18868..19787 | TCONS_00035977-exon-sc0001396-1491911889:18868..19787 | Clytia hemisphaerica | exon |
| TCONS_00035977-exon-sc0001396-1510915933:18868..19787 | TCONS_00035977-exon-sc0001396-1510915933:18868..19787 | Clytia hemisphaerica | exon |
| TCONS_00035977-exon-sc0001396-1575043694:18868..19787 | TCONS_00035977-exon-sc0001396-1575043694:18868..19787 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001396 | supercontig | sc0001396:18868..19787 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR006928 | htUSP_central_domain |
Blast
The following BLAST results are available for this feature:
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