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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00035975 ID=TCONS_00035975|Name=TCONS_00035975|organism=Clytia hemisphaerica|type=transcript|length=733bp
TGTGCTTGTGCGTCAATATCAATATAGAAAAGAGTTGTTTTTCAAAGAGA
TTATAATGGACGGCCAActtggaaaaattacatactatGCCCTCAGAGTA
GAATTTACTTTCAGGGGTAGCCCACATGGGCATTGTTTGCTTTGGGCTAA
AGATGTCCCAAAACTTGAAAACGGAAAAGAAAAGTATATTGAACACATAG
ATAGTGTTATTTCTGCTAATGTTCCTGATAGGGAAGAAAGTCCTGAGTTA
TGGAATTTAGTCACTAAATATCAAATACACTCCCATTCAAGAACTTGTag
taaatatcgcaaaaatgaatgccgatttcaatttggaaaacttttttgcA
AGCGTACTATTTTGTCTGAACCGCTTCCCGAGGGGTTACCTGAAACTGAA
AAACATGATATTTTGGTTGCTAGAAATAATGTGATCCAAACTGTTCAAGA
GTATATAGANAAACATGATATTTTGGTTGCTAGAAATAATGTGATCCAAA
CTGTTCAAGAGTATATAGATACAAATTTGCATCCTAAAAAGAGAAACATT
CTGGATCCTGGTAAGCCTGAGTATATTGAAATTGGATCTATTGATACAAT
TTTGGATTCTTTAGGATTAAATTATGAAACGTATGAATATCACTTATCAA
TCTCACCAGACAAAGATCAGCATTTGTTTCTAAAACGTGACCCATATTCT
TGTTTTGTCAACAATTATTTTGCAGAAGGCCTN Run BLAST on NCBI protein sequence of TCONS_00035975-protein >TCONS_00035975-protein ID=TCONS_00035975-protein|Name=TCONS_00035975-protein|organism=Clytia hemisphaerica|type=polypeptide|length=244bp
VLVRQYQYRKELFFKEIIMDGQLGKITYYALRVEFTFRGSPHGHCLLWAK
DVPKLENGKEKYIEHIDSVISANVPDREESPELWNLVTKYQIHSHSRTCS
KYRKNECRFQFGKLFCKRTILSEPLPEGLPETEKHDILVARNNVIQTVQE
YIXKHDILVARNNVIQTVQEYIDTNLHPKKRNILDPGKPEYIEIGSIDTI
LDSLGLNYETYEYHLSISPDKDQHLFLKRDPYSCFVNNYFAEGX Run BLAST on NCBI transcript from alignment at sc0001396:10856..11588 Legend: exonCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00035975 ID=TCONS_00035975|Name=TCONS_00035975|organism=Clytia hemisphaerica|type=transcript|length=733bp|location=Sequence derived from alignment at sc0001396:10856..11588 (Clytia hemisphaerica)
NAGGCCTTCTGCAAAATAATTGTTGACAAAACAAGAATATGGGTCACGTT
TTAGAAACAAATGCTGATCTTTGTCTGGTGAGATTGATAAGTGATATTCA
TACGTTTCATAATTTAATCCTAAAGAATCCAAAATTGTATCAATAGATCC
AATTTCAATATACTCAGGCTTACCAGGATCCAGAATGTTTCTCTTTTTAG
GATGCAAATTTGTATCTATATACTCTTGAACAGTTTGGATCACATTATTT
CTAGCAACCAAAATATCATGTTTNTCTATATACTCTTGAACAGTTTGGAT
CACATTATTTCTAGCAACCAAAATATCATGTTTTTCAGTTTCAGGTAACC
CCTCGGGAAGCGGTTCAGACAAAATAGTACGCTTgcaaaaaagttttcca
aattgaaatcggcattcatttttgcgatatttactACAAGTTCTTGAATG
GGAGTGTATTTGATATTTAGTGACTAAATTCCATAACTCAGGACTTTCTT
CCCTATCAGGAACATTAGCAGAAATAACACTATCTATGTGTTCAATATAC
TTTTCTTTTCCGTTTTCAAGTTTTGGGACATCTTTAGCCCAAAGCAAACA
ATGCCCATGTGGGCTACCCCTGAAAGTAAATTCTACTCTGAGGGCatagt
atgtaatttttccaagTTGGCCGTCCATTATAATCTCTTTGAAAAACAAC
TCTTTTCTATATTGATATTGACGCACAAGCACA Coding sequence (CDS) from alignment at sc0001396:10856..11588 >TCONS_00035975 ID=TCONS_00035975|Name=TCONS_00035975|organism=Clytia hemisphaerica|type=CDS|length=732bp|location=Sequence derived from alignment at sc0001396:10856..11588 (Clytia hemisphaerica)
NAGGCCTTCTGCAAAATAATTGTTGACAAAACAAGAATATGGGTCACGTT
TTAGAAACAAATGCTGATCTTTGTCTGGTGAGATTGATAAGTGATATTCA
TACGTTTCATAATTTAATCCTAAAGAATCCAAAATTGTATCAATAGATCC
AATTTCAATATACTCAGGCTTACCAGGATCCAGAATGTTTCTCTTTTTAG
GATGCAAATTTGTATCTATATACTCTTGAACAGTTTGGATCACATTATTT
CTAGCAACCAAAATATCATGTTTNTCTATATACTCTTGAACAGTTTGGAT
CACATTATTTCTAGCAACCAAAATATCATGTTTTTCAGTTTCAGGTAACC
CCTCGGGAAGCGGTTCAGACAAAATAGTACGCTTgcaaaaaagttttcca
aattgaaatcggcattcatttttgcgatatttactACAAGTTCTTGAATG
GGAGTGTATTTGATATTTAGTGACTAAATTCCATAACTCAGGACTTTCTT
CCCTATCAGGAACATTAGCAGAAATAACACTATCTATGTGTTCAATATAC
TTTTCTTTTCCGTTTTCAAGTTTTGGGACATCTTTAGCCCAAAGCAAACA
ATGCCCATGTGGGCTACCCCTGAAAGTAAATTCTACTCTGAGGGCatagt
atgtaatttttccaagTTGGCCGTCCATTATAATCTCTTTGAAAAACAAC
TCTTTTCTATATTGATATTGACGCACAAGCAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00035975-exon-sc0001396-1491911889:10856..11588 | TCONS_00035975-exon-sc0001396-1491911889:10856..11588 | Clytia hemisphaerica | exon |
| TCONS_00035975-exon-sc0001396-1510915933:10856..11588 | TCONS_00035975-exon-sc0001396-1510915933:10856..11588 | Clytia hemisphaerica | exon |
| TCONS_00035975-exon-sc0001396-1575043694:10856..11588 | TCONS_00035975-exon-sc0001396-1575043694:10856..11588 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001396 | supercontig | sc0001396:10856..11588 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR025476 | Helitron_helicase-like |
Blast
The following BLAST results are available for this feature:
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