TCONS_00035971 (transcript) - C. hemisphaerica

Overview
NameTCONS_00035971
Unique NameTCONS_00035971
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length632

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00035971 ID=TCONS_00035971|Name=TCONS_00035971|organism=Clytia hemisphaerica|type=transcript|length=632bp
CTGCCAAAGGAGAAGTTTAGATGCCGGCTCATTTCCTCTGATGACGTGAC
CTGCTAACTGCAATCTTCTTTTCTGGATAAGACTGCTCAATCGGTGCAGC
TTACCGTACAACACTTTGTTAGTAATGTGGACATTAGACtggatgttttt
gacttttctcaGCATTCTCGTATACCCTCCGTCTAGTTTCTTTGTCAGAG
TAGACGTTAGTGACCATGATTCACAGGAGTATAGGAGGATGGACTCGACA
GTTGACTTGAAGAGTTGCACTTTTATACTGAGTGAAGCTTCTGATTTCCA
GATTTTCTCAAGTGAATTTAGTGCCGACCAAGCTTGGGCAAGTCTTATCT
CTATGTCATGGTTAGAGTTTGTGTAAGCTCCGAGGTATTTGAAATCGTCA
ACCTTTTCCAGGGCGATACCATTAACAGATTGGATGCCATCGCTTGTTGT
AGGGTTGATGTGCATATATTTGGTTTTCTTAGCGTTGAGAAAGAGACCGA
TAGAGTTGATATCTCAAGCTTGTGTAGGAGGTTTTCAGCTTCGACTACTG
TTTCATTTAGAAGAGATCTATCGTCTGCAAAGTCAAGATCTGCTAATTTC
TCGGTATGATGTCGTCTACTTCTGCGTTTTTC
Run BLAST on NCBI

protein sequence of TCONS_00035971-protein

>TCONS_00035971-protein ID=TCONS_00035971-protein|Name=TCONS_00035971-protein|organism=Clytia hemisphaerica|type=polypeptide|length=155bp
MHINPTTSDGIQSVNGIALEKVDDFKYLGAYTNSNHDIEIRLAQAWSALN
SLEKIWKSEASLSIKVQLFKSTVESILLYSCESWSLTSTLTKKLDGGYTR
MLRKVKNIQSNVHITNKVLYGKLHRLSSLIQKRRLQLAGHVIRGNEPASK
LLLWQ
Run BLAST on NCBI

transcript from alignment at sc0001395:8261..8892

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00035971 ID=TCONS_00035971|Name=TCONS_00035971|organism=Clytia hemisphaerica|type=transcript|length=632bp|location=Sequence derived from alignment at sc0001395:8261..8892 (Clytia hemisphaerica)
GAAAAACGCAGAAGTAGACGACATCATACCGAGAAATTAGCAGATCTTGA
CTTTGCAGACGATAGATCTCTTCTAAATGAAACAGTAGTCGAAGCTGAAA
ACCTCCTACACAAGCTTGAGATATCAACTCTATCGGTCTCTTTCTCAACG
CTAAGAAAACCAAATATATGCACATCAACCCTACAACAAGCGATGGCATC
CAATCTGTTAATGGTATCGCCCTGGAAAAGGTTGACGATTTCAAATACCT
CGGAGCTTACACAAACTCTAACCATGACATAGAGATAAGACTTGCCCAAG
CTTGGTCGGCACTAAATTCACTTGAGAAAATCTGGAAATCAGAAGCTTCA
CTCAGTATAAAAGTGCAACTCTTCAAGTCAACTGTCGAGTCCATCCTCCT
ATACTCCTGTGAATCATGGTCACTAACGTCTACTCTGACAAAGAAACTAG
ACGGAGGGTATACGAGAATGCtgagaaaagtcaaaaacatccaGTCTAAT
GTCCACATTACTAACAAAGTGTTGTACGGTAAGCTGCACCGATTGAGCAG
TCTTATCCAGAAAAGAAGATTGCAGTTAGCAGGTCACGTCATCAGAGGAA
ATGAGCCGGCATCTAAACTTCTCCTTTGGCAG

Coding sequence (CDS) from alignment at sc0001395:8261..8892

>TCONS_00035971 ID=TCONS_00035971|Name=TCONS_00035971|organism=Clytia hemisphaerica|type=CDS|length=465bp|location=Sequence derived from alignment at sc0001395:8261..8892 (Clytia hemisphaerica)
ATGCACATCAACCCTACAACAAGCGATGGCATCCAATCTGTTAATGGTAT
CGCCCTGGAAAAGGTTGACGATTTCAAATACCTCGGAGCTTACACAAACT
CTAACCATGACATAGAGATAAGACTTGCCCAAGCTTGGTCGGCACTAAAT
TCACTTGAGAAAATCTGGAAATCAGAAGCTTCACTCAGTATAAAAGTGCA
ACTCTTCAAGTCAACTGTCGAGTCCATCCTCCTATACTCCTGTGAATCAT
GGTCACTAACGTCTACTCTGACAAAGAAACTAGACGGAGGGTATACGAGA
ATGCtgagaaaagtcaaaaacatccaGTCTAATGTCCACATTACTAACAA
AGTGTTGTACGGTAAGCTGCACCGATTGAGCAGTCTTATCCAGAAAAGAA
GATTGCAGTTAGCAGGTCACGTCATCAGAGGAAATGAGCCGGCATCTAAA
CTTCTCCTTTGGCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021129XLOC_021129Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035971-exon-sc0001395-1491911889:8261..8892TCONS_00035971-exon-sc0001395-1491911889:8261..8892Clytia hemisphaericaexon
TCONS_00035971-exon-sc0001395-1510915933:8261..8892TCONS_00035971-exon-sc0001395-1510915933:8261..8892Clytia hemisphaericaexon
TCONS_00035971-exon-sc0001395-1575043694:8261..8892TCONS_00035971-exon-sc0001395-1575043694:8261..8892Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035971-proteinTCONS_00035971-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001395supercontigsc0001395:8261..8892 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.37267	1.01238	4.24294	2.20854	0.675307	0.555874	0.621312	1.37753	0.141354	0.318712	0	0.298011	0.344638	1.73799	0.297804	0.68775	0.139755	0.346766	0.312291	0.0932969	0.209682	0.196318	0.154399	0.105994	0.195688	0.644435	0.313889	0.164184	0.433328	0.139538
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00035971 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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