TCONS_00035969 (transcript) - C. hemisphaerica

Overview
NameTCONS_00035969
Unique NameTCONS_00035969
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1559

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00035969 ID=TCONS_00035969|Name=TCONS_00035969|organism=Clytia hemisphaerica|type=transcript|length=1559bp
aaaccttgaaaaaaactaccaaaagttggcagtctgtaaagcaatgaaaa
tgaatttcagggtcggtcgggcccgtaaaacaattaatcaaattggtctt
gcCTAACAAGGTAATGATAAAGACTTTGTGAAAGGGGTGAGGTTTTAGGA
GCAAATTTTTACATGTTTTGAATGGATGTGTCTTAATTGCCGAAATGTCT
ATTAAATACAACTTTGAAGTTAGAGTTTCTCTTGTCCGCACGCGTCTGCT
GACCAAGTTAATTTTGAAACTTACATTTGATCCCTTCAGGATCCAATTTG
AGAAATTGAGTATATTTGTCAGTAATTTGCTTCGAATAGATACTGGTAGC
TTTTTGACCCCAGGCTGAGGGTCGTTTAAGAAGGCATTTCAGAGTTTtcg
gaaatcttttaaaatgacCTCCAAAAATATCCACTTCGATTCATTTACAA
TCAAATCTCGTTTCATTTAATTCCGTTGTAGTTAGCAAAAATGTAAgtcg
aaagatgatgatgaGAACCTAATTACAACAGAAACACTTGTCAGAATGAT
TAGATTGCAatctcatttttggacctacctccgTTAGCAAACGAGGGATC
AACCTTGTTTTGATAAGTCGTTCAGAAGAAAAACTCAAAGCCACAGCTCA
AGAAATTGGCGGGAAAGTGGATGTAAAAACCATCTCTTATGATTTCTCCA
ACCCAGATGGTTATTCAAAGATtgaaacagaattgaaaaacttGGATATT
GGTCTGCTTGtgaATAATGTTGGAATGGGTTATGATCACCCTGATTTTTA
TCTTCACTATGGCGAACAATATTTTGACAAGATGATTGACATCAATGTAA
CTTCAGTATTGAAGATGACAAGAATTGTTTTGGATGGTATGGCACAAAGg
AAGAAGGGATTATTGGTTCATGTTTCATCTGCTTCTTCGCTAATGCCAAT
TCCTTTCTTGTCTGGTTACAGCGCTTCCAAGACTTATTGCTTTCCCATCA
ATATATTGACACTGCGCAGTATAAAATCATCAAATAAATAAAAGCTTTGT
CAACAACTTTGGTGAATCTCTACACTATGAATACATGGCAAAAGGAATCA
AAAGTCAGGTTGTGTTCCCTTACTTCGTGGCTACCAAGATGTCAAAGATG
CGTTCTAATGGTTTGTTAGTTCCCAGTGCCGACCAGTACGCTCGTCAAAT
GGTAAACGCCATTGGTTTAACGCCCACTATGGCGGGGTACTGGGCACACG
AGTTGTTCCTTGCTGTTTCCACCCTTCTCCCAAGATGGCTTGTGATTGGT
CAAACGCGCAAAATGATGGATGCAACTCGAAGAAGATGGGAAAAGAAGCA
ACAAGCCAAAAAAGATTGAGTCAAACgttcATCGATACATTATGAAAAGA
ATTTCGACCGCGGGATCTGTAGGATGCATGTAGTGGATTTGGCAATCTAG
TTTTTTGTACAATTAGGCATAAGTGAATTTTAGGTTAGCTATAGGATCAT
CACGTTCACTATTATGATAAATGGAGGGATTTATATGCTTTTTGCGGTAT
TATTTGGCA
Run BLAST on NCBI

transcript from alignment at sc0001395:30116..35006-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00035969 ID=TCONS_00035969|Name=TCONS_00035969|organism=Clytia hemisphaerica|type=transcript|length=4891bp|location=Sequence derived from alignment at sc0001395:30116..35006- (Clytia hemisphaerica)
AAACCTTGAAAAAAACTACCAAAAGTTGGCAGTCTGTAAAGCAATGAAAA
TGAATTTCAGGGTCGGTCGGGCCCGTAAAACAATTAATCAAATTGGTCTT
GCCTAACAAGGTAATGATAAAGACTTTGTGAAAGGGGTGAGGTTTTAGGA
GCAAATTTTTACATGTTTTGAATGGATGTGTCTTAATTGCCGAAATGTCT
ATTAAATACAACTTTGAAGTTAGAGTTTCTCTTGTCCGCACGCGTCTGCT
GACCAAGTTAATTTTGAAACTTACATTTGATCCCTTCAGGATCCAATTTG
AGAAATTGAGTATATTTGTCAGTAATTTGCTTCGAATAGATACTGGTAGC
TTTTTGACCCCAGGCTGAGGGTCGTTTAAGAAGGCATTTCAGAGTTTTCG
GAAATCTTTTAAAATGACCTCCAAAAATATCCACTTCGATTCATTTACAA
TCAAATCTCGTTTCATTTAATTCCGTTGTAGTTAGCAAAAATGTAAGTCG
AAAGATGATGATGAGAACCTAATTACAACAGAAACACTTGTCAGAATGAT
TAGATTGCAATCTCATTTTTGGACCTACCTCCGGTATGTCCGTTCGTCTG
TTCGTTCGTCCGTCCGTCCGTCNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNTTTTTGGGCCTGAATGGTTTAAGTGATTTTCGT
ATTTGGGGAAATTCCTTTTTACCATTTTACATTATTCAACACACAAGCTT
TATTTTTCCATTCTGAATTTTTTTACAATTATTGTCACTTTTTTCTTATT
TTCATCTGATGTTAATCATTAGGTAGGTCCATTCAGCATGTTGCTTGTAT
TCCGTTGTAGTTAGCAAACGAGGGATCAACCTTGTTTTGATAAGTCGTTC
AGAAGAAAAACTCAAAGCCACAGCTCAAGAAATTGGTAAGTGCATGATTC
ATGATTTAACCCTGGGGTGCTCAAGGTAAGTGACCTACCAAATGTGCGGT
CTTAATTAAGGTTTCAGATCATAAAGTGCACTGTTAGGGTGGACAAAGTG
AGAACAACAAAGTTGTTGAAAATGCATTTTAATTAAGAGTGGAATTTTTG
CCCAAATTTTACCCACTTACCCATTTGTTCTGCTCTGTATAGGTCAATAA
TTTAAAAGGCATCATCTTGGGCTGTACATGCAGTAGTTTTCGAGTGCAAC
CCCCCACAAGGATTTAACAGCTTCTTTGGTTTAGATTCAAAGTTTCTATC
GTCACTGTTAATACCCCAGGCCTTATCAATAAAATATTTATTTTTTACCA
AATTATCTTGAACTGTGCCACAGTTTGCTCACTACTAATAAAATGTGATA
TACTATGTAACATACAACCCACACATTGAAAGACAAGGAAAGATTTAGTT
AAAACGATATCTACCCAAGCACAGCTTTCAGGGCTCCTCTTAGCCAGTGC
TGGCATTGTATCCAACTAAGCCCTCAGATGTAAATTCACTAGATAGCATA
AAATAAATTATCTCTTTGTTTCAGGCGGGAAAGTGGATGTAAAAACCATC
TCTTATGATTTCTCCAACCCAGATGGTTATTCAAAGATTGAAACAGAATT
GAAAAACTTGGATATTGGTCTGCTTGGTAATAATATGACATTGTTTATAA
TTGCATTAAAAAAATGTGTTGAGTGTATTTTTCAAATAAAAAGTTTTTCT
TTTTTCTGTCTGTTTATATGTATTTTTTCGGTCTTCCCAAATTTTTTATT
CCATTTGAAGATTTTCTTAAAAATCGTTAGCTTTTATGAAAATAAAAATT
TTTTATACCTATTTTTCTTTTCAGTGAATAATGTTGGAATGGGTTATGAT
CACCCTGATTTTTATCTTCACTATGGCGAACAAGTATATTTTCTTTAAAC
AGTTACAAATGTTTATTGTTGTCNTTATCTCCACTATGGCGAACAAGTAT
ATTTTCTTTAAAACAGTTTTAAATGTTTATTGTTGTTGTCCTTTATGTTA
ATTTTCTCTTTTTATTTACACGAAAACAGTTGTTTGTGTGTGTATCTTAT
TTTTTGGCAAAACCATAAAAATATGAACATCAAAATTCAAAGTTTGAAAA
ATCCCTAGGAAAATGATAAAAATGTGTCCAAAATAGGGCGAAATATTATT
CCTGCGAACTGTGATTTTTAATTATTTTTTTTGAACCGGAAAAATAAGTT
TCCTTTGAAATTAGTCCCCTGAAGGTATGATACTTAGTTGATAATGACAC
CCTTTACCGTTTCATTCATTTTAGTATTTTGACAAGATGATTGACATCAA
TGTAACTTCAGTATTGAAGGTTTGTCAAATCTCTTTTGAATCTTTCTGTT
TGTTAAATTGATGGGCGTTCTTTGAATGCCACACCTATGAGACAGTTTTT
TTTTGCAAGGTCAATACTCTGTAGCAATTTACCCACTACGAAAGCCAGCC
TCATTAATTAGATTGAAAAGTCTGTCAGTGATGCCTGGGGTCAACTTAAA
GCTTTTTGGATGATAAGTAAGTAGCCTGGAAATGTAGTGTAGTTCTCAAT
TTTTAGCTTTTTCTTTGACAGAGTCTGTCAGATTCTAGTTGCTTGTTGAA
TGTTAAAGGATTAGGTATTTGTTTTTATTTAAAAACAGAGTTTTTCAAAT
TAGCTTTTTTGGGTTCTCATTTTTTCAACTCGAAGTAGCTATTGGGTTAT
TTGGATTTTAGTGTTTTTCTTTCAAAATGGAGGCTTAGTCGAGTGGTTCA
AATCTTCTTCATGTTCAGCCAGAAATAAACTCCAAACCATGCTATCCGTT
GATTCAAAAGAAGAAAAAGAAAAAATTAGCCATTGAAATAAAATTCTTCT
AATTTTCAGATGACAAGAATTGTTTTGGATGGTATGGCACAAAGGTGTGA
ATCTTTATAATTTCTTTTCATGTTCTATCTTTGAAATGTTTTGAGATAAC
AGACAGCCAAAGGTACTGCTTTCCCTTGTTATCCTGCTTCTCATCGCCTA
CTCAAGTGGAAATGAGATGAAATGCAACAATTTTATGCAACAACGTTAAC
TAGATTATGATTGCAATGGGTGGTATCATCTTCTTTTCTATCGAGTTACA
TGAAAAATTATAATTTCCATTTTCTTTTCAAATTAGGAAGAAGGGATTAT
TGGTTCATGTTTCATCTGCTTCTTCGCTAATGCCAATTCCTTTCTTGTCT
GGTTACAGCGCTTCCAAGACTTATTGCTTTCCCATCAATATATTGACACT
GCGCAGTATAAAATCATCAAATAAATAAAGTATTTTATCTGAAATCTTCA
CTGGGTGATATCTAGATTTAAGAGAAAACACATATCAAGCCTCATTCAAC
TGAGGTCCTTTCNTTCACTGTGTGATATCTGGATTTAAGAGAAAACACAT
ATCAAGCCTCATTCAACTCAGGTCCTTTTACATTTGCAGTTCATTATTGC
GTAACCTGAGGGGAACAACGATAACTATGTGATTCTCTCTGTTCTCTTTT
TCCAGAGCTTTGTCAACAACTTTGGTGAATCTCTACACTATGAATACATG
GCAAAAGGAATCAAAAGTCAGGTTGGTAGACTCGCTTTATATAAACATGA
GCTTTTCCCGAAACTTTTGATAATTTTGGACATTTTTCCAGGGAAGATCT
GCACAATTATTTGGCTTGAAAAGGTTCGTCCATCTCCCTTTATGGACATT
AAAAGGAACAGCCAGTTTCCTGTTAAATCAAAGAAATTAAATTTGTGTTG
AGTCGACTTTTAAATATTATAGCTTCAAAAGTAGCTATGAAAATCATAAT
TGAACAAATTCTGAGTGATTGAGGAAAGCTTTTTTTGTTTTGACTTTTTC
GGCAGGTTGTGTTCCCTTACTTCGTGGCTACCAAGATGTCAAAGATGCGT
TCTAATGGTTTGTTAGTTCCCAGTGCCGACCAGTACGCTCGTCAAATGGT
AAACGCCATTGGTTTAACGCCCACTATGGCGGGGTACTGGGCACACGAGT
TGTTCCTTGCTGTTTCCACCCTTCTCCCAAGATGGCTTGTGATTGGTCAA
ACGCGCAAAATGATGGATGCAACTCGAAGAAGATGGGAAAAGAAGCAACA
AGCCAAAAAAGATTGAGTCAAACGTAACCTTTGTTTGTATGTTTCGCCCT
TTGAAGCACTATCATGTTTATAATGAACACCTCTTTTGAGAAAGAAAGAC
ATAACACAAGTATGTAGAGCTGTTGATGAAAAAGTATACCGCAAAAGAAC
AGAAAAAAGATGTTTAAGTGCTTTTTAATGTGCTTCACTTTCAAACTTTT
TTTTTCAGGTTCATCGATACATTATGAAAAGAATTTCGACCGCGGGATCT
GTAGGATGCATGTAGTGGATTTGGCAATCTAGTTTTTTGTACAATTAGGC
ATAAGTGAATTTTAGGTTAGCTATAGGATCATCACGTTCACTATTATGAT
AAATGGAGGGATTTATATGCTTTTTGCGGTATTATTTGGCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021128XLOC_021128Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035969-exon-sc0001395-1575043694:34424..35006TCONS_00035969-exon-sc0001395-1575043694:34424..35006Clytia hemisphaericaexon
TCONS_00035969-exon-sc0001395-1575043694:33672..33746TCONS_00035969-exon-sc0001395-1575043694:33672..33746Clytia hemisphaericaexon
TCONS_00035969-exon-sc0001395-1575043694:32981..33082TCONS_00035969-exon-sc0001395-1575043694:32981..33082Clytia hemisphaericaexon
TCONS_00035969-exon-sc0001395-1575043694:32724..32782TCONS_00035969-exon-sc0001395-1575043694:32724..32782Clytia hemisphaericaexon
TCONS_00035969-exon-sc0001395-1575043694:32288..32332TCONS_00035969-exon-sc0001395-1575043694:32288..32332Clytia hemisphaericaexon
TCONS_00035969-exon-sc0001395-1575043694:31713..31747TCONS_00035969-exon-sc0001395-1575043694:31713..31747Clytia hemisphaericaexon
TCONS_00035969-exon-sc0001395-1575043694:31328..31470TCONS_00035969-exon-sc0001395-1575043694:31328..31470Clytia hemisphaericaexon
TCONS_00035969-exon-sc0001395-1575043694:31036..31101TCONS_00035969-exon-sc0001395-1575043694:31036..31101Clytia hemisphaericaexon
TCONS_00035969-exon-sc0001395-1575043694:30484..30751TCONS_00035969-exon-sc0001395-1575043694:30484..30751Clytia hemisphaericaexon
TCONS_00035969-exon-sc0001395-1575043694:30116..30298TCONS_00035969-exon-sc0001395-1575043694:30116..30298Clytia hemisphaericaexon
TCONS_00035969-exon-sc0001395-1510915933:34424..35006TCONS_00035969-exon-sc0001395-1510915933:34424..35006Clytia hemisphaericaexon
TCONS_00035969-exon-sc0001395-1510915933:33672..33746TCONS_00035969-exon-sc0001395-1510915933:33672..33746Clytia hemisphaericaexon
TCONS_00035969-exon-sc0001395-1510915933:32981..33082TCONS_00035969-exon-sc0001395-1510915933:32981..33082Clytia hemisphaericaexon
TCONS_00035969-exon-sc0001395-1510915933:32724..32782TCONS_00035969-exon-sc0001395-1510915933:32724..32782Clytia hemisphaericaexon
TCONS_00035969-exon-sc0001395-1510915933:32288..32332TCONS_00035969-exon-sc0001395-1510915933:32288..32332Clytia hemisphaericaexon
TCONS_00035969-exon-sc0001395-1510915933:31713..31747TCONS_00035969-exon-sc0001395-1510915933:31713..31747Clytia hemisphaericaexon
TCONS_00035969-exon-sc0001395-1510915933:31328..31470TCONS_00035969-exon-sc0001395-1510915933:31328..31470Clytia hemisphaericaexon
TCONS_00035969-exon-sc0001395-1510915933:31036..31101TCONS_00035969-exon-sc0001395-1510915933:31036..31101Clytia hemisphaericaexon
TCONS_00035969-exon-sc0001395-1510915933:30484..30751TCONS_00035969-exon-sc0001395-1510915933:30484..30751Clytia hemisphaericaexon
TCONS_00035969-exon-sc0001395-1510915933:30116..30298TCONS_00035969-exon-sc0001395-1510915933:30116..30298Clytia hemisphaericaexon
TCONS_00035969-exon-sc0001395-1491911889:34424..35006TCONS_00035969-exon-sc0001395-1491911889:34424..35006Clytia hemisphaericaexon
TCONS_00035969-exon-sc0001395-1491911889:33672..33746TCONS_00035969-exon-sc0001395-1491911889:33672..33746Clytia hemisphaericaexon
TCONS_00035969-exon-sc0001395-1491911889:32981..33082TCONS_00035969-exon-sc0001395-1491911889:32981..33082Clytia hemisphaericaexon
TCONS_00035969-exon-sc0001395-1491911889:32724..32782TCONS_00035969-exon-sc0001395-1491911889:32724..32782Clytia hemisphaericaexon
TCONS_00035969-exon-sc0001395-1491911889:32288..32332TCONS_00035969-exon-sc0001395-1491911889:32288..32332Clytia hemisphaericaexon
TCONS_00035969-exon-sc0001395-1491911889:31713..31747TCONS_00035969-exon-sc0001395-1491911889:31713..31747Clytia hemisphaericaexon
TCONS_00035969-exon-sc0001395-1491911889:31328..31470TCONS_00035969-exon-sc0001395-1491911889:31328..31470Clytia hemisphaericaexon
TCONS_00035969-exon-sc0001395-1491911889:31036..31101TCONS_00035969-exon-sc0001395-1491911889:31036..31101Clytia hemisphaericaexon
TCONS_00035969-exon-sc0001395-1491911889:30484..30751TCONS_00035969-exon-sc0001395-1491911889:30484..30751Clytia hemisphaericaexon
TCONS_00035969-exon-sc0001395-1491911889:30116..30298TCONS_00035969-exon-sc0001395-1491911889:30116..30298Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001395supercontigsc0001395:30116..35006 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.1662	2.65792e-09	0	2.87796e-09	1.13558	0	0.936042	2.00803	0.620591	2.0527e-09	7.4358e-09	0.403519	0.686958	1.14409	1.01304	1.76194	1.47882	2.00561	5.31295e-10	0.669401	0	5.14091e-10	0.910659	0	4.92944e-10	0	0	0.545977	4.57129e-10	3.47866e-09
Blast
[Close]
BLAST of TCONS_00035969 vs. Swiss-Prot (Human)
Match: DHB12 (Very-long-chain 3-oxoacyl-CoA reductase OS=Homo sapiens GN=HSD17B12 PE=1 SV=2)

HSP 1 Score: 130.568 bits (327), Expect = 1.952e-47
Identity = 65/139 (46.76%), Postives = 101/139 (72.66%), Query Frame = 1 
Query:  583 VSKRGINLVLISRSEEKLKATAQEIGGK--VDVKTISYDFSNPDGYSKIETELKNLDIGLLVNNVGMGYDHPDFYLHYGE--QYFDKMIDINVTSVLKMTRIVLDGMAQRKKGLLVHVSSASSLMPIPFLSGYSASKTY 987
            ++K G+ +VLISRS++KL   + EI  K  V+ +TI+ DF++ D Y KI+T L  L+IG+LVNNVGM Y++P+++L   +      KMI+IN+ SV KMT++VL GM +R KG ++++SS S ++P+P L+ YSA+KT+
Sbjct:   70 LAKHGMKVVLISRSKDKLDQVSSEIKEKFKVETRTIAVDFASEDIYDKIKTGLAGLEIGILVNNVGMSYEYPEYFLDVPDLDNVIKKMININILSVCKMTQLVLPGMVERSKGAILNISSGSGMLPVPLLTIYSATKTF 208

HSP 2 Score: 78.1814 bits (191), Expect = 1.952e-47
Identity = 38/109 (34.86%), Postives = 60/109 (55.05%), Query Frame = 2 
Query: 1028 HQINKSFVNNFGESLHYEYMAKGIKSQVVFPYFVATKMSKMRSNGLLVPSADQYARQMVNAIGLTPTMAGYWAHELFLAVSTLLPRWLVIGQTRKMMDATRRRWEKKQQ 1354
            +   K+FV+ F + LH EY +KG+  Q V PYFVATK++K+R   L  PS + + +  +  +GL     GY  H L  ++ + LP W+ +     M  +TR  + KK +
Sbjct:  202 YSATKTFVDFFSQCLHEEYRSKGVFVQSVLPYFVATKLAKIRKPTLDKPSPETFVKSAIKTVGLQSRTNGYLIHALMGSIISNLPSWIYLKIVMNMNKSTRAHYLKKTK 310
The following BLAST results are available for this feature:
BLAST of TCONS_00035969 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DHB121.952e-4746.76Very-long-chain 3-oxoacyl-CoA reductase OS=Homo sa... [more]
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