TCONS_00035966 (transcript) - C. hemisphaerica

Overview
NameTCONS_00035966
Unique NameTCONS_00035966
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length763

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00035966 ID=TCONS_00035966|Name=TCONS_00035966|organism=Clytia hemisphaerica|type=transcript|length=763bp
NTTATCTCCACTATGGCGAACAaTATTTTGACAAGATGATTGACATCAAT
GTAACTTCAGTATTGAAGATGACAAGAATTGTTTTGGATGGTATGGCACA
AAGgAAGAAGGGATTATTGGTTCATGTTTCATCTGCTTCTTCGCTAATGC
CAATTCCTTTCTTGTCTGGTTACAGCGCTTCCAAGACTTATTGCTTTCCC
ATCAATATATTGACACTGCGCAGTATAAAATCATCAAATAAATAAAAGCT
TTGTCAACAACTTTGGTGAATCTCTACACTATGAATACATGGCAAAAGGA
ATCAAAAGTCAGGTTGTGTTCCCTTACTTCGTGGCTACCAAGATGTCAAA
GATGCGTTCTAATGGTTTGTTAGTTCCCAGTGCCGACCAGTACGCTCGTC
AAATGGTAAACGCCATTGGTTTAACGCCCACTATGGCGGGGTACTGGGCA
CACGAGTTGTTCCTTGCTGTTTCCACCCTTCTCCCAAGATGGCTTGTGAT
TGGTCAAACGCGCAAAATGATGGATGCAACTCGAAGAAGATGGGAAAAGA
AGCAACAAGCCAAAAAAGATTGAGTCAAACgttcATCGATACATTATGAA
AAGAATTTCGACCGCGGGATCTGTAGGATGCATGTAGTGGATTTGGCAAT
CTAGTTTTTTGTACAATTAGGCATAAGTGAATTTTAGGTTAGCTATAGGA
TCATCACGTTCACTATTATGATAAATGGAGGGATTTATATGCTTTTTGCG
GTATTATTTGGCA
Run BLAST on NCBI

transcript from alignment at sc0001395:30116..32683-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00035966 ID=TCONS_00035966|Name=TCONS_00035966|organism=Clytia hemisphaerica|type=transcript|length=2568bp|location=Sequence derived from alignment at sc0001395:30116..32683- (Clytia hemisphaerica)
NTTATCTCCACTATGGCGAACAAGTATATTTTCTTTAAAACAGTTTTAAA
TGTTTATTGTTGTTGTCCTTTATGTTAATTTTCTCTTTTTATTTACACGA
AAACAGTTGTTTGTGTGTGTATCTTATTTTTTGGCAAAACCATAAAAATA
TGAACATCAAAATTCAAAGTTTGAAAAATCCCTAGGAAAATGATAAAAAT
GTGTCCAAAATAGGGCGAAATATTATTCCTGCGAACTGTGATTTTTAATT
ATTTTTTTTGAACCGGAAAAATAAGTTTCCTTTGAAATTAGTCCCCTGAA
GGTATGATACTTAGTTGATAATGACACCCTTTACCGTTTCATTCATTTTA
GTATTTTGACAAGATGATTGACATCAATGTAACTTCAGTATTGAAGGTTT
GTCAAATCTCTTTTGAATCTTTCTGTTTGTTAAATTGATGGGCGTTCTTT
GAATGCCACACCTATGAGACAGTTTTTTTTTGCAAGGTCAATACTCTGTA
GCAATTTACCCACTACGAAAGCCAGCCTCATTAATTAGATTGAAAAGTCT
GTCAGTGATGCCTGGGGTCAACTTAAAGCTTTTTGGATGATAAGTAAGTA
GCCTGGAAATGTAGTGTAGTTCTCAATTTTTAGCTTTTTCTTTGACAGAG
TCTGTCAGATTCTAGTTGCTTGTTGAATGTTAAAGGATTAGGTATTTGTT
TTTATTTAAAAACAGAGTTTTTCAAATTAGCTTTTTTGGGTTCTCATTTT
TTCAACTCGAAGTAGCTATTGGGTTATTTGGATTTTAGTGTTTTTCTTTC
AAAATGGAGGCTTAGTCGAGTGGTTCAAATCTTCTTCATGTTCAGCCAGA
AATAAACTCCAAACCATGCTATCCGTTGATTCAAAAGAAGAAAAAGAAAA
AATTAGCCATTGAAATAAAATTCTTCTAATTTTCAGATGACAAGAATTGT
TTTGGATGGTATGGCACAAAGGTGTGAATCTTTATAATTTCTTTTCATGT
TCTATCTTTGAAATGTTTTGAGATAACAGACAGCCAAAGGTACTGCTTTC
CCTTGTTATCCTGCTTCTCATCGCCTACTCAAGTGGAAATGAGATGAAAT
GCAACAATTTTATGCAACAACGTTAACTAGATTATGATTGCAATGGGTGG
TATCATCTTCTTTTCTATCGAGTTACATGAAAAATTATAATTTCCATTTT
CTTTTCAAATTAGGAAGAAGGGATTATTGGTTCATGTTTCATCTGCTTCT
TCGCTAATGCCAATTCCTTTCTTGTCTGGTTACAGCGCTTCCAAGACTTA
TTGCTTTCCCATCAATATATTGACACTGCGCAGTATAAAATCATCAAATA
AATAAAGTATTTTATCTGAAATCTTCACTGGGTGATATCTAGATTTAAGA
GAAAACACATATCAAGCCTCATTCAACTGAGGTCCTTTCNTTCACTGTGT
GATATCTGGATTTAAGAGAAAACACATATCAAGCCTCATTCAACTCAGGT
CCTTTTACATTTGCAGTTCATTATTGCGTAACCTGAGGGGAACAACGATA
ACTATGTGATTCTCTCTGTTCTCTTTTTCCAGAGCTTTGTCAACAACTTT
GGTGAATCTCTACACTATGAATACATGGCAAAAGGAATCAAAAGTCAGGT
TGGTAGACTCGCTTTATATAAACATGAGCTTTTCCCGAAACTTTTGATAA
TTTTGGACATTTTTCCAGGGAAGATCTGCACAATTATTTGGCTTGAAAAG
GTTCGTCCATCTCCCTTTATGGACATTAAAAGGAACAGCCAGTTTCCTGT
TAAATCAAAGAAATTAAATTTGTGTTGAGTCGACTTTTAAATATTATAGC
TTCAAAAGTAGCTATGAAAATCATAATTGAACAAATTCTGAGTGATTGAG
GAAAGCTTTTTTTGTTTTGACTTTTTCGGCAGGTTGTGTTCCCTTACTTC
GTGGCTACCAAGATGTCAAAGATGCGTTCTAATGGTTTGTTAGTTCCCAG
TGCCGACCAGTACGCTCGTCAAATGGTAAACGCCATTGGTTTAACGCCCA
CTATGGCGGGGTACTGGGCACACGAGTTGTTCCTTGCTGTTTCCACCCTT
CTCCCAAGATGGCTTGTGATTGGTCAAACGCGCAAAATGATGGATGCAAC
TCGAAGAAGATGGGAAAAGAAGCAACAAGCCAAAAAAGATTGAGTCAAAC
GTAACCTTTGTTTGTATGTTTCGCCCTTTGAAGCACTATCATGTTTATAA
TGAACACCTCTTTTGAGAAAGAAAGACATAACACAAGTATGTAGAGCTGT
TGATGAAAAAGTATACCGCAAAAGAACAGAAAAAAGATGTTTAAGTGCTT
TTTAATGTGCTTCACTTTCAAACTTTTTTTTTCAGGTTCATCGATACATT
ATGAAAAGAATTTCGACCGCGGGATCTGTAGGATGCATGTAGTGGATTTG
GCAATCTAGTTTTTTGTACAATTAGGCATAAGTGAATTTTAGGTTAGCTA
TAGGATCATCACGTTCACTATTATGATAAATGGAGGGATTTATATGCTTT
TTGCGGTATTATTTGGCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021128XLOC_021128Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035966-exon-sc0001395-1575043694:32661..32683TCONS_00035966-exon-sc0001395-1575043694:32661..32683Clytia hemisphaericaexon
TCONS_00035966-exon-sc0001395-1575043694:32288..32332TCONS_00035966-exon-sc0001395-1575043694:32288..32332Clytia hemisphaericaexon
TCONS_00035966-exon-sc0001395-1575043694:31713..31747TCONS_00035966-exon-sc0001395-1575043694:31713..31747Clytia hemisphaericaexon
TCONS_00035966-exon-sc0001395-1575043694:31328..31470TCONS_00035966-exon-sc0001395-1575043694:31328..31470Clytia hemisphaericaexon
TCONS_00035966-exon-sc0001395-1575043694:31036..31101TCONS_00035966-exon-sc0001395-1575043694:31036..31101Clytia hemisphaericaexon
TCONS_00035966-exon-sc0001395-1575043694:30484..30751TCONS_00035966-exon-sc0001395-1575043694:30484..30751Clytia hemisphaericaexon
TCONS_00035966-exon-sc0001395-1575043694:30116..30298TCONS_00035966-exon-sc0001395-1575043694:30116..30298Clytia hemisphaericaexon
TCONS_00035966-exon-sc0001395-1510915933:32661..32683TCONS_00035966-exon-sc0001395-1510915933:32661..32683Clytia hemisphaericaexon
TCONS_00035966-exon-sc0001395-1510915933:32288..32332TCONS_00035966-exon-sc0001395-1510915933:32288..32332Clytia hemisphaericaexon
TCONS_00035966-exon-sc0001395-1510915933:31713..31747TCONS_00035966-exon-sc0001395-1510915933:31713..31747Clytia hemisphaericaexon
TCONS_00035966-exon-sc0001395-1510915933:31328..31470TCONS_00035966-exon-sc0001395-1510915933:31328..31470Clytia hemisphaericaexon
TCONS_00035966-exon-sc0001395-1510915933:31036..31101TCONS_00035966-exon-sc0001395-1510915933:31036..31101Clytia hemisphaericaexon
TCONS_00035966-exon-sc0001395-1510915933:30484..30751TCONS_00035966-exon-sc0001395-1510915933:30484..30751Clytia hemisphaericaexon
TCONS_00035966-exon-sc0001395-1510915933:30116..30298TCONS_00035966-exon-sc0001395-1510915933:30116..30298Clytia hemisphaericaexon
TCONS_00035966-exon-sc0001395-1491911889:32661..32683TCONS_00035966-exon-sc0001395-1491911889:32661..32683Clytia hemisphaericaexon
TCONS_00035966-exon-sc0001395-1491911889:32288..32332TCONS_00035966-exon-sc0001395-1491911889:32288..32332Clytia hemisphaericaexon
TCONS_00035966-exon-sc0001395-1491911889:31713..31747TCONS_00035966-exon-sc0001395-1491911889:31713..31747Clytia hemisphaericaexon
TCONS_00035966-exon-sc0001395-1491911889:31328..31470TCONS_00035966-exon-sc0001395-1491911889:31328..31470Clytia hemisphaericaexon
TCONS_00035966-exon-sc0001395-1491911889:31036..31101TCONS_00035966-exon-sc0001395-1491911889:31036..31101Clytia hemisphaericaexon
TCONS_00035966-exon-sc0001395-1491911889:30484..30751TCONS_00035966-exon-sc0001395-1491911889:30484..30751Clytia hemisphaericaexon
TCONS_00035966-exon-sc0001395-1491911889:30116..30298TCONS_00035966-exon-sc0001395-1491911889:30116..30298Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001395supercontigsc0001395:30116..32683 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.312035	0	0	0	0.857909	0	0.964468	8.66738	0.511394	0	0	0.58098	0.296173	0.89789	0.665748	2.57848	7.6499	3.23454	0	2.61931	0	0	2.47918	0	0	0	0	1.61725	0	0
Blast
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BLAST of TCONS_00035966 vs. Swiss-Prot (Human)
Match: DHB12 (Very-long-chain 3-oxoacyl-CoA reductase OS=Homo sapiens GN=HSD17B12 PE=1 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 1.206e-28
Identity = 38/109 (34.86%), Postives = 60/109 (55.05%), Query Frame = 1 
Query:  232 HQINKSFVNNFGESLHYEYMAKGIKSQVVFPYFVATKMSKMRSNGLLVPSADQYARQMVNAIGLTPTMAGYWAHELFLAVSTLLPRWLVIGQTRKMMDATRRRWEKKQQ 558
            +   K+FV+ F + LH EY +KG+  Q V PYFVATK++K+R   L  PS + + +  +  +GL     GY  H L  ++ + LP W+ +     M  +TR  + KK +
Sbjct:  202 YSATKTFVDFFSQCLHEEYRSKGVFVQSVLPYFVATKLAKIRKPTLDKPSPETFVKSAIKTVGLQSRTNGYLIHALMGSIISNLPSWIYLKIVMNMNKSTRAHYLKKTK 310

HSP 2 Score: 66.2402 bits (160), Expect = 1.206e-28
Identity = 28/58 (48.28%), Postives = 44/58 (75.86%), Query Frame = 3 
Query:   18 EQYFDKMIDINVTSVLKMTRIVLDGMAQRKKGLLVHVSSASSLMPIPFLSGYSASKTY 191
            +    KMI+IN+ SV KMT++VL GM +R KG ++++SS S ++P+P L+ YSA+KT+
Sbjct:  151 DNVIKKMININILSVCKMTQLVLPGMVERSKGAILNISSGSGMLPVPLLTIYSATKTF 208
The following BLAST results are available for this feature:
BLAST of TCONS_00035966 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DHB121.206e-2834.86Very-long-chain 3-oxoacyl-CoA reductase OS=Homo sa... [more]
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