TCONS_00035965 (transcript) - C. hemisphaerica

Overview
NameTCONS_00035965
Unique NameTCONS_00035965
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length269

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00035965 ID=TCONS_00035965|Name=TCONS_00035965|organism=Clytia hemisphaerica|type=transcript|length=269bp
CTTTCATCGTCCACTTTCATCATATCTCGCTCTAAGTCAAAGATACTACT
AACTCATGCTCTTTACAATTTcaaacttttgttttcttttcagaaaagta
aaagaaaaaatgatagactttttaataaaatacatTGGTTGGTTGTTGGT
GGGCAAATGTGTATTTGATTTCATTGGTTTCATTTGGAGATTATTGAGAT
TATATGTGTTACCAAAGTATGCAGCTTTTCGTGTGAACCTCAAGAAAAAG
TTTGGAACATGGGCAGGta
Run BLAST on NCBI

transcript from alignment at sc0001395:29396..29751-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00035965 ID=TCONS_00035965|Name=TCONS_00035965|organism=Clytia hemisphaerica|type=transcript|length=356bp|location=Sequence derived from alignment at sc0001395:29396..29751- (Clytia hemisphaerica)
CTTTCATCGTCCACTTTCATCATATCTCGCTCTAAGTCAAAGATACTACT
AACTCATGCTCTTTACAATTTCAAACTTTTGTTTTCTTTTCAGAAAAGTA
AAAGAAAAAATGATAGACTTTTTAATAAAATACATTGTTTGGTTGCTGGT
GGGCAAATGTGTATTTGATTTCATTGGTTTCATTTGNAAAGAAAAAATGA
TAGAATTTTTAATAAAATACATTGGTTGGTTGTTGGTGGGCAAATGTGTA
TTTGATTTCATTGGTTTCATTTGGAGATTATTGAGATTATATGTGTTACC
AAAGTATGCAGCTTTTCGTGTGAACCTCAAGAAAAAGTTTGGAACATGGG
CAGGTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021127XLOC_021127Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035965-exon-sc0001395-1575043694:29619..29751TCONS_00035965-exon-sc0001395-1575043694:29619..29751Clytia hemisphaericaexon
TCONS_00035965-exon-sc0001395-1575043694:29396..29531TCONS_00035965-exon-sc0001395-1575043694:29396..29531Clytia hemisphaericaexon
TCONS_00035965-exon-sc0001395-1510915933:29619..29751TCONS_00035965-exon-sc0001395-1510915933:29619..29751Clytia hemisphaericaexon
TCONS_00035965-exon-sc0001395-1510915933:29396..29531TCONS_00035965-exon-sc0001395-1510915933:29396..29531Clytia hemisphaericaexon
TCONS_00035965-exon-sc0001395-1491911889:29619..29751TCONS_00035965-exon-sc0001395-1491911889:29619..29751Clytia hemisphaericaexon
TCONS_00035965-exon-sc0001395-1491911889:29396..29531TCONS_00035965-exon-sc0001395-1491911889:29396..29531Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001395supercontigsc0001395:29396..29751 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.59893	9.52995	0.650893	1.91039	1.55048	0	1.47816	3.4596	0.484429	0.600044	0	1.14857	1.5293	3.57344	2.61143	4.20369	0.8631	0.88465	4.27767	1.27894	3.33488	0	3.29565	3.59547	6.17209	6.61013	3.15302	0.841248	5.10446	9.10111
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00035965 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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