|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00035964 ID=TCONS_00035964|Name=TCONS_00035964|organism=Clytia hemisphaerica|type=transcript|length=570bp
CTGTAGATCAACTTGAAGAAGATCAACTTAAAGAAATAGAGTCTCAGAAA
TTATTGGCGAAGAAAGAACGAATGAAAGTGGAACAAGATTTGGAATGGAA
TATTCTGATGATCAAACTTGAAATGGTTCGTTCAAACCAAGAATATTGCA
ACtcttatttttatttccatCTGAGTAAATGCCAAGCTGACCTTAGGATT
GACATCTCCAATACCTTGGAGGAAGTGTTAACGATGCAGGGTATGATGTT
ATAtcaatccaatcagaagctgAACGATTTGAGTCCTGCGCCTCAAACTT
TTCACGATCGCACAATATCtatcaaaaagGTGGAAGGGTGCAATTGCTTG
CGTTTACCGATACCCACAGTTTCGAGTTCAGAAATGAAGAGAGATCGAGA
CGATGCTTATTATAATAATGCAGTGACCAAGTGTCTTAAAGATCAAGGAT
TGGATGAAAGTCTGGTGGCTGATAAAGATTCACGCATGCGATTCCAAAAA
CAATGCACAGAGGATATCATCGGTGAAACGATAGAGAATCATGAATTTTC
ATACAAGATCGGAACGAATG Run BLAST on NCBI protein sequence of TCONS_00035964-protein >TCONS_00035964-protein ID=TCONS_00035964-protein|Name=TCONS_00035964-protein|organism=Clytia hemisphaerica|type=polypeptide|length=189bp
VDQLEEDQLKEIESQKLLAKKERMKVEQDLEWNILMIKLEMVRSNQEYCN
SYFYFHLSKCQADLRIDISNTLEEVLTMQGMMLYQSNQKLNDLSPAPQTF
HDRTISIKKVEGCNCLRLPIPTVSSSEMKRDRDDAYYNNAVTKCLKDQGL
DESLVADKDSRMRFQKQCTEDIIGETIENHEFSYKIGTN Run BLAST on NCBI transcript from alignment at sc0001395:61545..62637+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00035964 ID=TCONS_00035964|Name=TCONS_00035964|organism=Clytia hemisphaerica|type=transcript|length=1093bp|location=Sequence derived from alignment at sc0001395:61545..62637+ (Clytia hemisphaerica)
CTGTAGATCAACTTGAAGAAGATCAACTTAAAGAAATAGAGTCTCAGAAA
TTATTGGCGAAGAAAGAACGAATGAAAGTGGAACAAGATTTGGAATGGAA
TATTCTGATGATCAAACTTGAAATGGTTCGTTCAAACCAAGAATATTGCA
ACtcttatttttatttccatCTGAGTAAATGCCAAGCTGACCTTAGGATT
GACATCTCCAATACCTTGGAGGAAGTGTTAACGATGCAGGGTATGATGTT
ATAtcaatccaatcagaagctgAACGATTTGAGTCCTGCGCCTCAAACTT
TTCACGATCGCACAATATCtatcaaaaaggtaaaaaaacatGTTCCTCTT
GAATTCATTGTGATAGGGATGTTTATATAATCGCTAAAGGGGAGACCAGT
TTGATTAGTTGttgggcccgaccgaccctgaaattccaaaaatcgaaatg
aaaataaaattgatttgcaTTTacatttgtattttcattgctttacagac
tgccaaattttcaagatttgggtagttttttcaaggttttgagagtttta
tgttcaattttttattttatccatGAGTTtgagctttttgtgtctttttt
tttctatttcgcatttttgtaaAGATGTGATAgcttttgctgccttttta
ggagattttatgggtgaaattctattttaatttttattttttcactgacc
gaccgaccctcttttttgggtagtaTGACCCGTAAAACAGCTTACATTTT
TATCTTACAATAGAAGAGATAATGATATCCTAATGGGAGCCATTCAATTT
ATTGTTacatattgaaataaaatttctgAGTTACATGCTTTTGTTTTATT
AGGTGGAAGGGTGCAATTGCTTGCGTTTACCGATACCCACAGTTTCGAGT
TCAGAAATGAAGAGAGATCGAGACGATGCTTATTATAATAATGCAGTGAC
CAAGTGTCTTAAAGATCAAGGATTGGATGAAAGTCTGGTGGCTGATAAAG
ATTCACGCATGCGATTCCAAAAACAATGCACAGAGGATATCATCGGTGAA
ACGATAGAGAATCATGAATTTTCATACAAGATCGGAACGAATG Coding sequence (CDS) from alignment at sc0001395:61545..62637+ >TCONS_00035964 ID=TCONS_00035964|Name=TCONS_00035964|organism=Clytia hemisphaerica|type=CDS|length=1134bp|location=Sequence derived from alignment at sc0001395:61545..62637+ (Clytia hemisphaerica)
GTAGATCAACTTGAAGAAGATCAACTTAAAGAAATAGAGTCTCAGAAATT
ATTGGCGAAGAAAGAACGAATGAAAGTGGAACAAGATTTGGAATGGAATA
TTCTGATGATCAAACTTGAAATGGTTCGTTCAAACCAAGAATATTGCAAC
tcttatttttatttccatCTGAGTAAATGCCAAGCTGACCTTAGGATTGA
CATCTCCAATACCTTGGAGGAAGTGTTAACGATGCAGGGTATGATGTTAT
AtcaatccaatcagaagctgAACGATTTGAGTCCTGCGCCTCAAACTTTT
CACGATCGCACAATATCtatcaaaaagGTGGAAGGGTGCAATTGCTTGCG
TTTACCGATACCCACAGTTTCGAGTTCAGAAATGAAGAGAGATCGAGACG
ATGCTTATTATAATAATGCAGTGACCAAGTGTCTTAAAGATCAAGGATTG
GATGAAAGTCTGGTGGCTGATAAAGATTCACGCATGCGATTCCAAAAACA
ATGCACAGAGGATATCATCGGTGAAACGATAGAGAATCATGAATTTTCAT
ACAAGATCGGAACGAATGTAGATCAACTTGAAGAAGATCAACTTAAAGAA
ATAGAGTCTCAGAAATTATTGGCGAAGAAAGAACGAATGAAAGTGGAACA
AGATTTGGAATGGAATATTCTGATGATCAAACTTGAAATGGTTCGTTCAA
ACCAAGAATATTGCAACtcttatttttatttccatCTGAGTAAATGCCAA
GCTGACCTTAGGATTGACATCTCCAATACCTTGGAGGAAGTGTTAACGAT
GCAGGGTATGATGTTATAtcaatccaatcagaagctgAACGATTTGAGTC
CTGCGCCTCAAACTTTTCACGATCGCACAATATCtatcaaaaagGTGGAA
GGGTGCAATTGCTTGCGTTTACCGATACCCACAGTTTCGAGTTCAGAAAT
GAAGAGAGATCGAGACGATGCTTATTATAATAATGCAGTGACCAAGTGTC
TTAAAGATCAAGGATTGGATGAAAGTCTGGTGGCTGATAAAGATTCACGC
ATGCGATTCCAAAAACAATGCACAGAGGATATCATCGGTGAAACGATAGA
GAATCATGAATTTTCATACAAGATCGGAACGAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00035964-exon-sc0001395-1491911889:61545..61873 | TCONS_00035964-exon-sc0001395-1491911889:61545..61873 | Clytia hemisphaerica | exon |
| TCONS_00035964-exon-sc0001395-1510915933:61545..61873 | TCONS_00035964-exon-sc0001395-1510915933:61545..61873 | Clytia hemisphaerica | exon |
| TCONS_00035964-exon-sc0001395-1575043694:61545..61873 | TCONS_00035964-exon-sc0001395-1575043694:61545..61873 | Clytia hemisphaerica | exon |
| TCONS_00035964-exon-sc0001395-1491911889:62397..62637 | TCONS_00035964-exon-sc0001395-1491911889:62397..62637 | Clytia hemisphaerica | exon |
| TCONS_00035964-exon-sc0001395-1510915933:62397..62637 | TCONS_00035964-exon-sc0001395-1510915933:62397..62637 | Clytia hemisphaerica | exon |
| TCONS_00035964-exon-sc0001395-1575043694:62397..62637 | TCONS_00035964-exon-sc0001395-1575043694:62397..62637 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001395 | supercontig | sc0001395:61545..62637 + |
Blast
The following BLAST results are available for this feature:
|
