TCONS_00035961 (transcript) - C. hemisphaerica

Overview
NameTCONS_00035961
Unique NameTCONS_00035961
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length932

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00035961 ID=TCONS_00035961|Name=TCONS_00035961|organism=Clytia hemisphaerica|type=transcript|length=932bp
ACCATGATAGAGTTCGAGTGGATGAAGTGAAGGTGATATTGAAAGGTGTG
AAGTCGCCAACGGGTACGGTCAACATGTACATCGAAACAACTGGAGTGAC
CGAAGACAGATTCAAGGGGAAATGCTTCAAGTTCATCGGAGAAAAATGGT
TCAAAATGGTCTCTTATTATTCGAAGATTGCTAAGAAAGCAGTGGCGAAG
GGTGGAAAACGATTGCGAAAAGGGATTGAAGAGACTTTGCAAGTGGTTGA
TAGTGGTGACGTGCATCGCAAATTCTCCGGTATTTTCATGAGTCCTACCG
TCTTTTCGAACTGGATTGTGCGCATCCCTGAAGAGCAGAATCCTGGGCTT
GAACTAGAGGATTTGGAGGAGATTGAGATCAAGTTCTCTGGTGGTTTTGT
TGCATCGACCAGAAACACTGAATGTGAGCTACAAGACACCAGTGGTGAAG
AAGAGGCGAGATTGGAACAAGCAATGTCCGAGTAAAAGAAATTGATGAGC
ACGTCACCACCAATCAAAGTGGTGACAACTTCGATGAATGGAATGTAGCT
GTAGGTGCATATGATAATGATGGTGGTgaataccgggtgtcccagaaaaa
agtcctcctctttgaagtgaattttctcgagttctatgaacCTTAGAAGA
ATCAAttcttttgcattggaaagaggaaggataaacttaaattttgaggg
gtcatttgtcaaattttttcaattagatcaaaagttatcgtCTAAATTct
aaaacattacttttcaaaaaagtcgaaaaaaggcgaaaaatgaGAGTATC
AAATCATCAAAGAAAGCACTTCTTTCATCAATTTATTAACGATCAAGTTT
TTCTATGTTGTCCTTTAAGGTAGACTACACAATAGACAGTAGACTACCTT
TAAGGTGGCTTTTGCAGGAATTGTAATCTTGT
Run BLAST on NCBI

transcript from alignment at sc0001395:27054..28507+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00035961 ID=TCONS_00035961|Name=TCONS_00035961|organism=Clytia hemisphaerica|type=transcript|length=1454bp|location=Sequence derived from alignment at sc0001395:27054..28507+ (Clytia hemisphaerica)
ACCATGATAGAGTTCGAGTGGATGAAGTGAAGGTAATCACGTCCTGTAAC
ACATCCTCCCGCCCCTCTAACACCCTTCTACAAAAAAGTTACAGCCTGAG
CGAGAAAAAACTACACTTCGTTAAGTCTGAGTTAATTCCAAAAGTTCTTG
CCACTACTTAATGACTGATTGGTTCAATAACTAAAATAACTAGAGTCAGG
CATCTTTTCTTTATCGACTTTGAAGACTTCCTAATCAATAATGAAGttta
aaaaataactaaaaagtAAAGCCCTccaagcggtttgcgtgatgttgtga
tagggacttttttctagcgtgattacttgatttggaaattttttcttcgt
aATTGCATGATCAGAGGCCGAAACATAATGGTgacttcaaagattttttt
gccGAGATGCGCGAGAtggacttttttcaaagggatgcgtgattatcCAA
GTTTTTCGCTAATTTCGTTGATATTGTGATCTGAGTTACCGCTGGGGGAG
CCTCTAAATTTAATTAacctttaaagtttaaaatgtGCTTTGTTGGTATT
GCAGGTGATATTGAAAGGTGTGAAGTCGCCAACGGGTACGGTCAACATGT
ACATCGAAACAACTGGAGTGACCGAAGACAGATTCAAGGGGAAATGCTTC
AAGTTCATCGGAGAAAAATGGTTCAAAATGGTCTCTTATTATTCGAAGAT
TGCTAAGAAAGCAGTGGCGAAGGGTGGAAAACGATTGCGAAAAGGGATTG
AAGAGACTTTGCAAGTGGTTGATAGTGGTGACGTGCATCGCAAATTCTCC
GGTATTTTCATGAGTCCTACCGTCTTTTCGAACTGGATTGTGCGCATCCC
TGAAGAGCAGAATCCTGGGCTTGAACTAGAGGATTTGGAGGAGATTGAGA
TCAAGTTCTCTGGTGGTTTTGTTGCATCGACCAGAAACACTGAATGTGAG
CTACAAGACACCAGTGGTGAAGAAGAGGCGAGATTGGAACAAGCAATGTC
CGAGTAAAAGAAATTGATGAGCACGTCACCACCAATCAAAGTGGTGACAA
CTTCGATGAATGGAATGTAGCTGTAGGTGCATATGATAATGATGGTGGTg
aataccgggtgtcccagaaaaaagtcctcctctttgaagtgaattttctc
gagttctatgaacCTTAGAAGAATCAAttcttttgcattggaaagaggaa
ggataaacttaaattttgaggggtcatttgtcaaattttttcaattagat
caaaagttatcgtCTAAATTctaaaacattacttttcaaaaaagtcgaaa
aaaggcgaaaaatgaGAGTATCAAATCATCAAAGAAAGCACTTCTTTCAT
CAATTTATTAACGATCAAGTTTTTCTATGTTGTCCTTTAAGGTAGACTAC
ACAATAGACAGTAGACTACCTTTAAGGTGGCTTTTGCAGGAATTGTAATC
TTGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021123XLOC_021123Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035961-exon-sc0001395-1491911889:27054..27085TCONS_00035961-exon-sc0001395-1491911889:27054..27085Clytia hemisphaericaexon
TCONS_00035961-exon-sc0001395-1510915933:27054..27085TCONS_00035961-exon-sc0001395-1510915933:27054..27085Clytia hemisphaericaexon
TCONS_00035961-exon-sc0001395-1575043694:27054..27085TCONS_00035961-exon-sc0001395-1575043694:27054..27085Clytia hemisphaericaexon
TCONS_00035961-exon-sc0001395-1491911889:27608..28507TCONS_00035961-exon-sc0001395-1491911889:27608..28507Clytia hemisphaericaexon
TCONS_00035961-exon-sc0001395-1510915933:27608..28507TCONS_00035961-exon-sc0001395-1510915933:27608..28507Clytia hemisphaericaexon
TCONS_00035961-exon-sc0001395-1575043694:27608..28507TCONS_00035961-exon-sc0001395-1575043694:27608..28507Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001395supercontigsc0001395:27054..28507 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.519342	0.382809	0.722277	1.08713	0.716432	0.498285	1.57273	1.63672	0.260468	0.344674	0.42683	0.685413	0.369001	0.495551	0.282516	0.513948	1.53135	2.05509	0.250467	0.525188	0.656468	1.19319	0.692797	1.45785	0.582968	0.364309	0.525548	0.403699	0.653569	0.407888
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00035961 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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