TCONS_00035956 (transcript) - C. hemisphaerica

Overview
NameTCONS_00035956
Unique NameTCONS_00035956
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length465

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00035956 ID=TCONS_00035956|Name=TCONS_00035956|organism=Clytia hemisphaerica|type=transcript|length=465bp
ATTTTTATCGGAAATATTATCATTGGTATgttttttctccaaaactttAC
ATAGGAAAAATGGATCACTGGAGCCTTCACTCGAATAGATAGCGACAATT
TGACCTGGCTTGATTGTTTCCCCGAAATCACTATGTGTAAACAGTTCATT
TTCCTCCATATCAGGGGCTACaacatcttcttcatcttcttcgcTATCAT
AATCATCGTCCCCACTGTCATCCTCACTGGAGTCCTCAGCACACACGATA
TGACCTTTGCTGCCAGTAGAGGGATCCTCGCAACTTATGAAATTCCCAAT
AGAACATTGAGGGCAGGAACAAATCTCCTCTTTCATTTGGATCTCTCCTG
AGGGAAAGTAGGACATCATGTGACTGTCACAGGAACAGGCATCTGCACTT
CTGGGTCTACGGTAATAACATCCAAACATTCGTATTGCTTTGTATCATCT
TCTTTCATAAGGTTA
Run BLAST on NCBI

protein sequence of TCONS_00035956-protein

>TCONS_00035956-protein ID=TCONS_00035956-protein|Name=TCONS_00035956-protein|organism=Clytia hemisphaerica|type=polypeptide|length=143bp
MFGCYYRRPRSADACSCDSHMMSYFPSGEIQMKEEICSCPQCSIGNFISC
EDPSTGSKGHIVCAEDSSEDDSGDDDYDSEEDEEDVVAPDMEENELFTHS
DFGETIKPGQIVAIYSSEGSSDPFFLCKVLEKKHTNDNISDKN
Run BLAST on NCBI

transcript from alignment at sc0001393:27384..27848

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00035956 ID=TCONS_00035956|Name=TCONS_00035956|organism=Clytia hemisphaerica|type=transcript|length=465bp|location=Sequence derived from alignment at sc0001393:27384..27848 (Clytia hemisphaerica)
TAACCTTATGAAAGAAGATGATACAAAGCAATACGAATGTTTGGATGTTA
TTACCGTAGACCCAGAAGTGCAGATGCCTGTTCCTGTGACAGTCACATGA
TGTCCTACTTTCCCTCAGGAGAGATCCAAATGAAAGAGGAGATTTGTTCC
TGCCCTCAATGTTCTATTGGGAATTTCATAAGTTGCGAGGATCCCTCTAC
TGGCAGCAAAGGTCATATCGTGTGTGCTGAGGACTCCAGTGAGGATGACA
GTGGGGACGATGATTATGATAgcgaagaagatgaagaagatgttGTAGCC
CCTGATATGGAGGAAAATGAACTGTTTACACATAGTGATTTCGGGGAAAC
AATCAAGCCAGGTCAAATTGTCGCTATCTATTCGAGTGAAGGCTCCAGTG
ATCCATTTTTCCTATGTaaagttttggagaaaaaacATACCAATGATAAT
ATTTCCGATAAAAAT

Coding sequence (CDS) from alignment at sc0001393:27384..27848

>TCONS_00035956 ID=TCONS_00035956|Name=TCONS_00035956|organism=Clytia hemisphaerica|type=CDS|length=429bp|location=Sequence derived from alignment at sc0001393:27384..27848 (Clytia hemisphaerica)
ATGTTTGGATGTTATTACCGTAGACCCAGAAGTGCAGATGCCTGTTCCTG
TGACAGTCACATGATGTCCTACTTTCCCTCAGGAGAGATCCAAATGAAAG
AGGAGATTTGTTCCTGCCCTCAATGTTCTATTGGGAATTTCATAAGTTGC
GAGGATCCCTCTACTGGCAGCAAAGGTCATATCGTGTGTGCTGAGGACTC
CAGTGAGGATGACAGTGGGGACGATGATTATGATAgcgaagaagatgaag
aagatgttGTAGCCCCTGATATGGAGGAAAATGAACTGTTTACACATAGT
GATTTCGGGGAAACAATCAAGCCAGGTCAAATTGTCGCTATCTATTCGAG
TGAAGGCTCCAGTGATCCATTTTTCCTATGTaaagttttggagaaaaaac
ATACCAATGATAATATTTCCGATAAAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021121XLOC_021121Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035956-exon-sc0001393-1491911889:27384..27848TCONS_00035956-exon-sc0001393-1491911889:27384..27848Clytia hemisphaericaexon
TCONS_00035956-exon-sc0001393-1510915933:27384..27848TCONS_00035956-exon-sc0001393-1510915933:27384..27848Clytia hemisphaericaexon
TCONS_00035956-exon-sc0001393-1575043694:27384..27848TCONS_00035956-exon-sc0001393-1575043694:27384..27848Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035956-proteinTCONS_00035956-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001393supercontigsc0001393:27384..27848 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.18689	0.443048	0.534518	0.333606	0.467131	0.289309	0.28081	0.830671	0	0.191436	0	0	0	0	0	0	0	0	0	0	2.97585	1.72632	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00035956 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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