TCONS_00035955 (transcript) - C. hemisphaerica

Overview
NameTCONS_00035955
Unique NameTCONS_00035955
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length481

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00035955 ID=TCONS_00035955|Name=TCONS_00035955|organism=Clytia hemisphaerica|type=transcript|length=481bp
GAGCTGTCAAAGAAAACGTCTTCAGTTACAATTGCCTTTCTTAATGGGGT
TTTAAGCCCAAAGCCACTCATGGCGTCAACTAAGCCTTTGCCATGCCCTT
TCACCCCATAatagtaaataaaagttttgttGTTAATTTGTGAAAGTTTG
CTGAGAACGGGGAATACATTGAGACATTTATATTGTTCAGAACAATTGTC
ACTTTTAAACTTGTAAATTTCTTGATCTGGATAGCGGTGGATTAGATCCT
CAATGACAGCTTTGGTGAAGCAATAATTATGTTTACGGTTGTCAGACAAG
TGATAAATGTATATATTTTTGTCCTCGTGATGAGCAACCGTACAATGtag
tgaaatttgttttttgctGAAATGAGCATCTTGGGGCTCAAATTTGGGAG
AACCTGATACATTTTCAGAATAATCCATGTGAAAAATTGTTTCAGTGTTT
TGAGAAAGTACATTTTTCCAGTGGAATCGAT
Run BLAST on NCBI

protein sequence of TCONS_00035955-protein

>TCONS_00035955-protein ID=TCONS_00035955-protein|Name=TCONS_00035955-protein|organism=Clytia hemisphaerica|type=polypeptide|length=159bp
RFHWKNVLSQNTETIFHMDYSENVSGSPKFEPQDAHFSKKQISLHCTVAH
HEDKNIYIYHLSDNRKHNYCFTKAVIEDLIHRYPDQEIYKFKSDNCSEQY
KCLNVFPVLSKLSQINNKTFIYYYGVKGHGKGLVDAMSGFGLKTPLRKAI
VTEDVFFDS
Run BLAST on NCBI

transcript from alignment at sc0001393:24416..24896

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00035955 ID=TCONS_00035955|Name=TCONS_00035955|organism=Clytia hemisphaerica|type=transcript|length=481bp|location=Sequence derived from alignment at sc0001393:24416..24896 (Clytia hemisphaerica)
ATCGATTCCACTGGAAAAATGTACTTTCTCAAAACACTGAAACAATTTTT
CACATGGATTATTCTGAAAATGTATCAGGTTCTCCCAAATTTGAGCCCCA
AGATGCTCATTTCagcaaaaaacaaatttcactaCATTGTACGGTTGCTC
ATCACGAGGACAAAAATATATACATTTATCACTTGTCTGACAACCGTAAA
CATAATTATTGCTTCACCAAAGCTGTCATTGAGGATCTAATCCACCGCTA
TCCAGATCAAGAAATTTACAAGTTTAAAAGTGACAATTGTTCTGAACAAT
ATAAATGTCTCAATGTATTCCCCGTTCTCAGCAAACTTTCACAAATTAAC
aacaaaacttttatttactatTATGGGGTGAAAGGGCATGGCAAAGGCTT
AGTTGACGCCATGAGTGGCTTTGGGCTTAAAACCCCATTAAGAAAGGCAA
TTGTAACTGAAGACGTTTTCTTTGACAGCTC

Coding sequence (CDS) from alignment at sc0001393:24416..24896

>TCONS_00035955 ID=TCONS_00035955|Name=TCONS_00035955|organism=Clytia hemisphaerica|type=CDS|length=477bp|location=Sequence derived from alignment at sc0001393:24416..24896 (Clytia hemisphaerica)
CGATTCCACTGGAAAAATGTACTTTCTCAAAACACTGAAACAATTTTTCA
CATGGATTATTCTGAAAATGTATCAGGTTCTCCCAAATTTGAGCCCCAAG
ATGCTCATTTCagcaaaaaacaaatttcactaCATTGTACGGTTGCTCAT
CACGAGGACAAAAATATATACATTTATCACTTGTCTGACAACCGTAAACA
TAATTATTGCTTCACCAAAGCTGTCATTGAGGATCTAATCCACCGCTATC
CAGATCAAGAAATTTACAAGTTTAAAAGTGACAATTGTTCTGAACAATAT
AAATGTCTCAATGTATTCCCCGTTCTCAGCAAACTTTCACAAATTAACaa
caaaacttttatttactatTATGGGGTGAAAGGGCATGGCAAAGGCTTAG
TTGACGCCATGAGTGGCTTTGGGCTTAAAACCCCATTAAGAAAGGCAATT
GTAACTGAAGACGTTTTCTTTGACAGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021120XLOC_021120Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035955-proteinTCONS_00035955-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035955-exon-sc0001393-1491911889:24416..24896TCONS_00035955-exon-sc0001393-1491911889:24416..24896Clytia hemisphaericaexon
TCONS_00035955-exon-sc0001393-1510915933:24416..24896TCONS_00035955-exon-sc0001393-1510915933:24416..24896Clytia hemisphaericaexon
TCONS_00035955-exon-sc0001393-1575043694:24416..24896TCONS_00035955-exon-sc0001393-1575043694:24416..24896Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001393supercontigsc0001393:24416..24896 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0.335384	0.194746	0.109913	0.272291	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.43538	1.07418	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00035955 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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