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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00035950 ID=TCONS_00035950|Name=TCONS_00035950|organism=Clytia hemisphaerica|type=transcript|length=1164bp
ACTTGTCTAGCTTCTTTTCGAATTCTAGCACAGGGCATCCACTTAAATTC
CTCAGTTCTTTAGGGAGGGAGTTGAACAAGATTGGCCCACGGGTTGATAA
GAAATTATGTCGGATTGACTGTAGGGCAACTGATGTTCCTGTGATTCGGG
CTTTCACAAAGCACAATCTTCCAAGTCTGGGTTGAAAAACAGGTCGTAAA
CCGTCTGACTGGTTGATATTAGGCACAAGGTTTTCAAGGATCTTCCACGT
GTAGATGATCATGTATCTTTCACGTCTTCTTTCTAGCGAATAAAGCTTAA
ATGCCTTCAATCTTGACCAGTATGATTTTTCAGGGTGAATGATTTTTCGA
ATGAAGCTCCACTGGACCATTTCAAGACTTTGTAAATCACATTTTAGCCA
CGGGTTCCAGAGTTGAGAACAATATTCGAGTTTTGGAAGAACAAGAGATT
TCCAGAGAGTGAGCATTGGTGTAGCTGCTCTTGTTCTGAAAGTTCTCAGG
ATCCAGGATGAGGTTTTACGAGCATTGATAACAACATTGTTGATGCGGTG
TTTGAATTTACAATCATTGGACATCAGTACTCCAAGGTCTTTGACATATT
CATATTCTTTGATTTCAATGTTGCTACTGCTTGTGTAGTGTGTTTCAGCT
TTAACTTCAGTGTTTGGGCCATATCTCAGCAGCTCAAACTCCATGTTATT
ATCATCTGACCATACATAGACTGAATTTAAGTCCTGAATTTAAGTCTCCT
TGAAGTTTTTGTGTATCCTCGACGATTTCTATGCCTTTGATGAGTCTTGT
GTCATCTGCAAAGCTTCTTGTCGAAGAGTGTTGGACTTTTTCATCAATGT
CCCCCATTAAGATGAGGAAAATCAATGGTCCCAAAACACTCCCTTGTGGG
ACGCCTGATATGACAGGTGTTGGGTTAGATGGAGTNNNNNNNNNNNNNNN
NATTTTTTGCagtgttttagaaaaattgcaGGGAAGCCATCTGGTCCAGC
AGCAGAAGTATTATCAAGTTCATCTATCATATCTTCAAAGTCCTTTCTTG
TTAGTTGGATATCTCCCATCTGCACTGGTTGGTCAGTTGTTGAAGGGGGA
GGATGTTTGGGTGTACTGAAGACTGAGCTGTATTGTTTGGAGagaatatc
tgccatcttttttG Run BLAST on NCBI protein sequence of TCONS_00035950-protein >TCONS_00035950-protein ID=TCONS_00035950-protein|Name=TCONS_00035950-protein|organism=Clytia hemisphaerica|type=polypeptide|length=231bp
MEFELLRYGPNTEVKAETHYTSSSNIEIKEYEYVKDLGVLMSNDCKFKHR
INNVVINARKTSSWILRTFRTRAATPMLTLWKSLVLPKLEYCSQLWNPWL
KCDLQSLEMVQWSFIRKIIHPEKSYWSRLKAFKLYSLERRRERYMIIYTW
KILENLVPNINQSDGLRPVFQPRLGRLCFVKARITGTSVALQSIRHNFLS
TRGPILFNSLPKELRNLSGCPVLEFEKKLDK Run BLAST on NCBI transcript from alignment at sc0001393:13772..14935 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00035950 ID=TCONS_00035950|Name=TCONS_00035950|organism=Clytia hemisphaerica|type=transcript|length=1164bp|location=Sequence derived from alignment at sc0001393:13772..14935 (Clytia hemisphaerica)
CaaaaaagatggcagatattctCTCCAAACAATACAGCTCAGTCTTCAGT
ACACCCAAACATCCTCCCCCTTCAACAACTGACCAACCAGTGCAGATGGG
AGATATCCAACTAACAAGAAAGGACTTTGAAGATATGATAGATGAACTTG
ATAATACTTCTGCTGCTGGACCAGATGGCTTCCCtgcaatttttctaaaa
cactGCAAAAAATNNNNNNNNNNNNNNNNACTCCATCTAACCCAACACCT
GTCATATCAGGCGTCCCACAAGGGAGTGTTTTGGGACCATTGATTTTCCT
CATCTTAATGGGGGACATTGATGAAAAAGTCCAACACTCTTCGACAAGAA
GCTTTGCAGATGACACAAGACTCATCAAAGGCATAGAAATCGTCGAGGAT
ACACAAAAACTTCAAGGAGACTTAAATTCAGGACTTAAATTCAGTCTATG
TATGGTCAGATGATAATAACATGGAGTTTGAGCTGCTGAGATATGGCCCA
AACACTGAAGTTAAAGCTGAAACACACTACACAAGCAGTAGCAACATTGA
AATCAAAGAATATGAATATGTCAAAGACCTTGGAGTACTGATGTCCAATG
ATTGTAAATTCAAACACCGCATCAACAATGTTGTTATCAATGCTCGTAAA
ACCTCATCCTGGATCCTGAGAACTTTCAGAACAAGAGCAGCTACACCAAT
GCTCACTCTCTGGAAATCTCTTGTTCTTCCAAAACTCGAATATTGTTCTC
AACTCTGGAACCCGTGGCTAAAATGTGATTTACAAAGTCTTGAAATGGTC
CAGTGGAGCTTCATTCGAAAAATCATTCACCCTGAAAAATCATACTGGTC
AAGATTGAAGGCATTTAAGCTTTATTCGCTAGAAAGAAGACGTGAAAGAT
ACATGATCATCTACACGTGGAAGATCCTTGAAAACCTTGTGCCTAATATC
AACCAGTCAGACGGTTTACGACCTGTTTTTCAACCCAGACTTGGAAGATT
GTGCTTTGTGAAAGCCCGAATCACAGGAACATCAGTTGCCCTACAGTCAA
TCCGACATAATTTCTTATCAACCCGTGGGCCAATCTTGTTCAACTCCCTC
CCTAAAGAACTGAGGAATTTAAGTGGATGCCCTGTGCTAGAATTCGAAAA
GAAGCTAGACAAGT Coding sequence (CDS) from alignment at sc0001393:13772..14935 >TCONS_00035950 ID=TCONS_00035950|Name=TCONS_00035950|organism=Clytia hemisphaerica|type=CDS|length=693bp|location=Sequence derived from alignment at sc0001393:13772..14935 (Clytia hemisphaerica)
ATGGAGTTTGAGCTGCTGAGATATGGCCCAAACACTGAAGTTAAAGCTGA
AACACACTACACAAGCAGTAGCAACATTGAAATCAAAGAATATGAATATG
TCAAAGACCTTGGAGTACTGATGTCCAATGATTGTAAATTCAAACACCGC
ATCAACAATGTTGTTATCAATGCTCGTAAAACCTCATCCTGGATCCTGAG
AACTTTCAGAACAAGAGCAGCTACACCAATGCTCACTCTCTGGAAATCTC
TTGTTCTTCCAAAACTCGAATATTGTTCTCAACTCTGGAACCCGTGGCTA
AAATGTGATTTACAAAGTCTTGAAATGGTCCAGTGGAGCTTCATTCGAAA
AATCATTCACCCTGAAAAATCATACTGGTCAAGATTGAAGGCATTTAAGC
TTTATTCGCTAGAAAGAAGACGTGAAAGATACATGATCATCTACACGTGG
AAGATCCTTGAAAACCTTGTGCCTAATATCAACCAGTCAGACGGTTTACG
ACCTGTTTTTCAACCCAGACTTGGAAGATTGTGCTTTGTGAAAGCCCGAA
TCACAGGAACATCAGTTGCCCTACAGTCAATCCGACATAATTTCTTATCA
ACCCGTGGGCCAATCTTGTTCAACTCCCTCCCTAAAGAACTGAGGAATTT
AAGTGGATGCCCTGTGCTAGAATTCGAAAAGAAGCTAGACAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00035950-exon-sc0001393-1491911889:13772..14935 | TCONS_00035950-exon-sc0001393-1491911889:13772..14935 | Clytia hemisphaerica | exon |
| TCONS_00035950-exon-sc0001393-1510915933:13772..14935 | TCONS_00035950-exon-sc0001393-1510915933:13772..14935 | Clytia hemisphaerica | exon |
| TCONS_00035950-exon-sc0001393-1575043694:13772..14935 | TCONS_00035950-exon-sc0001393-1575043694:13772..14935 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001393 | supercontig | sc0001393:13772..14935 . |
Blast
The following BLAST results are available for this feature:
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